Wall clock time and date at job start Tue Mar 31 2020 22:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 110.64338 * 2 1 4 4 N 1.46499 * 109.47623 * 298.31093 * 3 2 1 5 5 C 1.36930 * 120.00531 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.38812 * 120.00082 * 180.02562 * 5 4 3 8 8 N 1.31617 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00113 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46962 * 59.99554 * 9 7 5 11 11 H 1.48498 * 109.47163 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46890 * 299.99839 * 9 7 5 13 13 C 1.55162 * 110.86812 * 123.24891 * 2 1 3 14 14 C 1.55133 * 101.48727 * 82.76853 * 13 2 1 15 15 N 1.47426 * 104.72274 * 37.29140 * 14 13 2 16 16 C 1.34774 * 125.64643 * 155.81671 * 15 14 13 17 17 O 1.21565 * 119.99832 * 185.53348 * 16 15 14 18 18 C 1.47755 * 120.00178 * 5.54186 * 16 15 14 19 19 C 1.40601 * 120.26999 * 204.32746 * 18 16 15 20 20 N 1.30797 * 121.53971 * 180.02562 * 19 18 16 21 21 C 1.33820 * 121.72058 * 0.02562 * 20 19 18 22 22 C 1.40518 * 120.81992 * 180.02562 * 21 20 19 23 23 C 1.36132 * 119.81605 * 179.62357 * 22 21 20 24 24 C 1.39342 * 121.08526 * 0.60952 * 23 22 21 25 25 C 1.36137 * 120.83320 * 359.40672 * 24 23 22 26 26 C 1.40539 * 119.62274 * 0.27601 * 25 24 23 27 27 C 1.39009 * 120.26867 * 24.39840 * 18 16 15 28 28 C 1.47021 * 108.70390 * 335.55809 * 15 14 13 29 29 H 1.08995 * 109.47225 * 181.68551 * 1 2 3 30 30 H 1.09002 * 109.47522 * 301.69153 * 1 2 3 31 31 H 1.09001 * 109.47116 * 61.68699 * 1 2 3 32 32 H 1.09003 * 109.47659 * 58.31217 * 3 2 1 33 33 H 1.09004 * 109.47335 * 178.30720 * 3 2 1 34 34 H 0.97008 * 119.99296 * 359.97438 * 4 3 2 35 35 H 0.96993 * 120.00531 * 180.02562 * 8 7 5 36 36 H 1.09000 * 111.00113 * 201.00748 * 13 2 1 37 37 H 1.09002 * 111.00455 * 324.85663 * 13 2 1 38 38 H 1.09003 * 110.49098 * 278.45563 * 14 13 2 39 39 H 1.08992 * 110.34195 * 156.06028 * 14 13 2 40 40 H 1.08002 * 119.22892 * 0.05265 * 19 18 16 41 41 H 1.08000 * 120.09434 * 359.95696 * 22 21 20 42 42 H 1.08001 * 119.46218 * 180.31538 * 23 22 21 43 43 H 1.08002 * 119.58293 * 179.68467 * 24 23 22 44 44 H 1.08007 * 120.18887 * 180.29676 * 25 24 23 45 45 H 1.08004 * 121.01856 * 359.92379 * 27 18 16 46 46 H 1.08993 * 109.88641 * 120.70220 * 28 15 14 47 47 H 1.08999 * 109.88267 * 241.86749 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4317 0.0000 4 7 1.6286 2.1197 -1.2160 5 6 1.9917 3.4215 -1.4360 6 1 2.6027 3.9413 -0.7130 7 6 1.5736 4.0735 -2.5879 8 7 0.8285 3.4403 -3.4689 9 14 2.0696 5.8493 -2.8885 10 1 3.5505 5.9480 -2.9377 11 1 1.4999 6.3105 -4.1799 12 1 1.5531 6.7006 -1.7869 13 6 2.0827 -0.7949 1.2125 14 6 2.0139 -2.2518 0.6840 15 7 2.3756 -2.1507 -0.7416 16 6 2.8902 -3.1437 -1.4937 17 8 3.2454 -2.9204 -2.6347 18 6 3.0224 -4.5037 -0.9316 19 6 3.9752 -5.3966 -1.4531 20 7 4.1131 -6.6061 -0.9748 21 6 3.3556 -7.0549 0.0329 22 6 3.5203 -8.3579 0.5325 23 6 2.7438 -8.7907 1.5634 24 6 1.7736 -7.9659 2.1290 25 6 1.5837 -6.6975 1.6724 26 6 2.3719 -6.2151 0.6135 27 6 2.2049 -4.9114 0.1162 28 6 2.0760 -0.7892 -1.2086 29 1 -0.3633 -1.0272 0.0302 30 1 -0.3634 0.5399 0.8744 31 1 -0.3633 0.4874 -0.9047 32 1 1.6923 1.9621 0.8745 33 1 3.1587 1.4096 0.0304 34 1 1.0794 1.6529 -1.8653 35 1 0.5366 3.8957 -4.2740 36 1 3.1095 -0.5044 1.4348 37 1 1.4444 -0.6677 2.0868 38 1 1.0049 -2.6497 0.7921 39 1 2.7295 -2.8810 1.2133 40 1 4.6082 -5.0760 -2.2674 41 1 4.2645 -9.0124 0.1033 42 1 2.8787 -9.7916 1.9463 43 1 1.1675 -8.3359 2.9428 44 1 0.8319 -6.0654 2.1216 45 1 1.4648 -4.2462 0.5359 46 1 2.9851 -0.3163 -1.5800 47 1 1.3252 -0.8248 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569684358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:55 Heat of formation + Delta-G solvation = 42.294093 kcal Electronic energy + Delta-G solvation = -28680.704211 eV Core-core repulsion = 24828.770449 eV Total energy + Delta-G solvation = -3851.933762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35916 -40.09696 -38.22005 -37.09504 -35.04396 -33.93014 -32.68241 -31.05667 -30.60095 -30.37841 -29.17065 -26.75966 -25.87109 -24.99523 -24.11368 -23.41405 -22.55122 -21.95581 -20.24245 -18.95369 -18.58152 -17.58281 -17.39139 -16.79149 -16.28030 -16.14622 -15.55474 -14.94396 -14.79485 -14.65745 -14.46543 -14.19597 -14.04149 -13.86690 -13.72609 -13.39404 -13.19977 -12.97995 -12.71212 -12.17543 -12.15438 -12.14360 -12.12553 -11.90140 -11.77913 -11.64069 -11.05523 -10.92745 -10.81412 -10.58240 -10.48109 -10.38098 -10.25615 -9.98627 -9.68226 -9.64076 -9.17445 -8.87689 -8.69386 -8.60943 -6.92850 -5.75850 -3.04943 -0.13258 0.30453 1.49560 2.29095 2.83813 3.00731 3.44948 3.49452 3.50507 3.74628 3.89235 4.12277 4.18006 4.38572 4.40901 4.46347 4.57259 4.59930 4.70002 4.79453 4.85887 4.88495 5.11050 5.15713 5.24864 5.32481 5.37580 5.42416 5.51374 5.57438 5.61653 5.69043 5.80090 5.88853 5.92872 5.98753 6.00686 6.06732 6.09045 6.13193 6.25179 6.32618 6.39464 6.45560 6.59246 6.69478 6.78217 7.42420 7.56147 7.69798 8.07130 8.42534 9.53944 10.10244 10.44731 11.46771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.002259 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.345863 B =12391.923578 C =13085.117681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.730 5.730 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.609 5.609 16 C 0.572 3.428 17 O -0.525 6.525 18 C -0.177 4.177 19 C 0.184 3.816 20 N -0.478 5.478 21 C 0.139 3.861 22 C -0.098 4.098 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.087 4.087 26 C -0.112 4.112 27 C -0.029 4.029 28 C 0.122 3.878 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.172 0.828 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.081 0.919 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -24.579 15.208 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.375 5.375 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.161 4.161 14 C -0.030 4.030 15 N -0.342 5.342 16 C 0.360 3.640 17 O -0.402 6.402 18 C -0.182 4.182 19 C 0.011 3.989 20 N -0.185 5.185 21 C 0.018 3.982 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.106 4.106 26 C -0.114 4.114 27 C -0.055 4.055 28 C 0.000 4.000 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.189 0.811 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.173 0.827 46 H 0.099 0.901 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.508 -24.997 14.247 28.811 hybrid contribution -0.610 1.444 -0.076 1.570 sum 0.898 -23.553 14.171 27.502 Atomic orbital electron populations 1.21760 0.93231 1.00538 1.03384 1.21841 0.96447 0.96328 0.93215 1.20638 0.96151 0.87936 0.91194 1.42357 1.62622 1.11799 1.20742 1.19147 1.26397 0.88420 1.03305 0.91267 1.24736 1.00525 0.98351 0.97221 1.69636 1.40328 1.36541 1.11529 0.86271 0.78008 0.84852 0.77054 1.21279 1.21711 1.21315 1.22932 1.02541 0.92726 0.97940 1.22706 0.99769 0.98904 0.81623 1.48439 1.62324 1.12357 1.11121 1.17633 0.77997 0.83176 0.85190 1.90843 1.48810 1.82833 1.17762 1.20999 1.01180 0.96489 0.99531 1.23091 0.93018 0.87116 0.95715 1.68075 1.24565 1.15205 1.10630 1.19077 0.92030 0.94541 0.92524 1.20847 1.00241 0.93832 0.96719 1.20990 0.94837 1.00129 0.95417 1.20950 0.98466 0.94082 1.00401 1.21062 0.98205 0.96325 0.95031 1.18815 0.98911 0.94752 0.98903 1.22540 0.96240 0.94605 0.92130 1.22153 1.01652 0.79384 0.96798 0.93595 0.92299 0.91055 0.95763 0.96119 0.78097 0.93417 0.90105 0.89548 0.91021 0.90542 0.81118 0.84511 0.85114 0.85259 0.84898 0.82727 0.90104 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.25 37.16 0.31 -1.54 16 2 C -0.08 -1.13 0.61 -152.67 -0.09 -1.22 16 3 C 0.17 3.19 5.07 -4.05 -0.02 3.17 16 4 N -0.73 -17.84 5.15 -59.91 -0.31 -18.14 16 5 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 9 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C -0.12 -1.31 6.04 -24.46 -0.15 -1.46 16 14 C 0.09 0.90 4.69 -2.41 -0.01 0.89 16 15 N -0.61 -8.40 3.32 -171.52 -0.57 -8.97 16 16 C 0.57 8.66 7.65 -12.37 -0.09 8.57 16 17 O -0.53 -10.04 16.93 5.31 0.09 -9.95 16 18 C -0.18 -2.17 5.68 -104.83 -0.60 -2.77 16 19 C 0.18 2.29 10.73 -17.10 -0.18 2.10 16 20 N -0.48 -5.91 10.30 -10.67 -0.11 -6.02 16 21 C 0.14 1.52 6.61 -84.79 -0.56 0.96 16 22 C -0.10 -0.83 9.97 -39.48 -0.39 -1.22 16 23 C -0.09 -0.58 9.94 -39.93 -0.40 -0.98 16 24 C -0.12 -0.71 9.96 -39.93 -0.40 -1.11 16 25 C -0.09 -0.61 9.77 -39.47 -0.39 -0.99 16 26 C -0.11 -1.07 5.74 -106.81 -0.61 -1.68 16 27 C -0.03 -0.28 7.93 -38.43 -0.30 -0.59 16 28 C 0.12 2.00 5.48 -3.06 -0.02 1.98 16 29 H 0.04 0.54 7.44 -51.93 -0.39 0.15 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.38 9.89 6.37 -40.82 -0.26 9.63 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 37 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.07 0.56 6.42 -51.93 -0.33 0.22 16 39 H 0.08 0.63 6.81 -51.93 -0.35 0.28 16 40 H 0.17 2.01 7.82 -52.49 -0.41 1.60 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.16 1.17 4.65 -52.48 -0.24 0.92 16 46 H 0.08 1.56 7.82 -51.93 -0.41 1.15 16 47 H 0.07 1.33 7.84 -51.93 -0.41 0.93 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -34.05 380.40 -10.13 -44.18 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.51 Total: 6.29 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.15 Total: -3.15 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -0.26 Total: -60.52 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.05 -10.13 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569684358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds