Wall clock time and date at job start Tue Mar 31 2020 22:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 110.64338 * 2 1 4 4 N 1.46499 * 109.47623 * 298.31093 * 3 2 1 5 5 C 1.36930 * 120.00531 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.38812 * 120.00082 * 180.02562 * 5 4 3 8 8 N 1.31617 * 120.00278 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00113 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46962 * 59.99554 * 9 7 5 11 11 H 1.48498 * 109.47163 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.46890 * 299.99839 * 9 7 5 13 13 C 1.55162 * 110.86812 * 123.24891 * 2 1 3 14 14 C 1.55133 * 101.48727 * 82.76853 * 13 2 1 15 15 N 1.47426 * 104.72274 * 37.29140 * 14 13 2 16 16 C 1.34774 * 125.64643 * 155.81671 * 15 14 13 17 17 O 1.21565 * 119.99832 * 185.53348 * 16 15 14 18 18 C 1.47755 * 120.00178 * 5.54186 * 16 15 14 19 19 C 1.40601 * 120.26999 * 204.32746 * 18 16 15 20 20 N 1.30797 * 121.53971 * 180.02562 * 19 18 16 21 21 C 1.33820 * 121.72058 * 0.02562 * 20 19 18 22 22 C 1.40518 * 120.81992 * 180.02562 * 21 20 19 23 23 C 1.36132 * 119.81605 * 179.62357 * 22 21 20 24 24 C 1.39342 * 121.08526 * 0.60952 * 23 22 21 25 25 C 1.36137 * 120.83320 * 359.40672 * 24 23 22 26 26 C 1.40539 * 119.62274 * 0.27601 * 25 24 23 27 27 C 1.39009 * 120.26867 * 24.39840 * 18 16 15 28 28 C 1.47021 * 108.70390 * 335.55809 * 15 14 13 29 29 H 1.08995 * 109.47225 * 181.68551 * 1 2 3 30 30 H 1.09002 * 109.47522 * 301.69153 * 1 2 3 31 31 H 1.09001 * 109.47116 * 61.68699 * 1 2 3 32 32 H 1.09003 * 109.47659 * 58.31217 * 3 2 1 33 33 H 1.09004 * 109.47335 * 178.30720 * 3 2 1 34 34 H 0.97008 * 119.99296 * 359.97438 * 4 3 2 35 35 H 0.96993 * 120.00531 * 180.02562 * 8 7 5 36 36 H 1.09000 * 111.00113 * 201.00748 * 13 2 1 37 37 H 1.09002 * 111.00455 * 324.85663 * 13 2 1 38 38 H 1.09003 * 110.49098 * 278.45563 * 14 13 2 39 39 H 1.08992 * 110.34195 * 156.06028 * 14 13 2 40 40 H 1.08002 * 119.22892 * 0.05265 * 19 18 16 41 41 H 1.08000 * 120.09434 * 359.95696 * 22 21 20 42 42 H 1.08001 * 119.46218 * 180.31538 * 23 22 21 43 43 H 1.08002 * 119.58293 * 179.68467 * 24 23 22 44 44 H 1.08007 * 120.18887 * 180.29676 * 25 24 23 45 45 H 1.08004 * 121.01856 * 359.92379 * 27 18 16 46 46 H 1.08993 * 109.88641 * 120.70220 * 28 15 14 47 47 H 1.08999 * 109.88267 * 241.86749 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4317 0.0000 4 7 1.6286 2.1197 -1.2160 5 6 1.9917 3.4215 -1.4360 6 1 2.6027 3.9413 -0.7130 7 6 1.5736 4.0735 -2.5879 8 7 0.8285 3.4403 -3.4689 9 14 2.0696 5.8493 -2.8885 10 1 3.5505 5.9480 -2.9377 11 1 1.4999 6.3105 -4.1799 12 1 1.5531 6.7006 -1.7869 13 6 2.0827 -0.7949 1.2125 14 6 2.0139 -2.2518 0.6840 15 7 2.3756 -2.1507 -0.7416 16 6 2.8902 -3.1437 -1.4937 17 8 3.2454 -2.9204 -2.6347 18 6 3.0224 -4.5037 -0.9316 19 6 3.9752 -5.3966 -1.4531 20 7 4.1131 -6.6061 -0.9748 21 6 3.3556 -7.0549 0.0329 22 6 3.5203 -8.3579 0.5325 23 6 2.7438 -8.7907 1.5634 24 6 1.7736 -7.9659 2.1290 25 6 1.5837 -6.6975 1.6724 26 6 2.3719 -6.2151 0.6135 27 6 2.2049 -4.9114 0.1162 28 6 2.0760 -0.7892 -1.2086 29 1 -0.3633 -1.0272 0.0302 30 1 -0.3634 0.5399 0.8744 31 1 -0.3633 0.4874 -0.9047 32 1 1.6923 1.9621 0.8745 33 1 3.1587 1.4096 0.0304 34 1 1.0794 1.6529 -1.8653 35 1 0.5366 3.8957 -4.2740 36 1 3.1095 -0.5044 1.4348 37 1 1.4444 -0.6677 2.0868 38 1 1.0049 -2.6497 0.7921 39 1 2.7295 -2.8810 1.2133 40 1 4.6082 -5.0760 -2.2674 41 1 4.2645 -9.0124 0.1033 42 1 2.8787 -9.7916 1.9463 43 1 1.1675 -8.3359 2.9428 44 1 0.8319 -6.0654 2.1216 45 1 1.4648 -4.2462 0.5359 46 1 2.9851 -0.3163 -1.5800 47 1 1.3252 -0.8248 -1.9979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569684358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:54 Heat of formation + Delta-G solvation = 20.161850 kcal Electronic energy + Delta-G solvation = -28681.663937 eV Core-core repulsion = 24828.770449 eV Total energy + Delta-G solvation = -3852.893488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19138 -41.10710 -39.37407 -37.85097 -36.59761 -35.01441 -34.07278 -32.34308 -31.69246 -31.09761 -30.35087 -27.93133 -27.39363 -25.98988 -25.15181 -24.57279 -23.55364 -22.99550 -21.19437 -20.20843 -19.51750 -19.05104 -18.34217 -17.85911 -17.44098 -17.03851 -16.67234 -16.42318 -15.74916 -15.57462 -15.49668 -15.23804 -15.22128 -15.11628 -14.84395 -14.51195 -14.35550 -14.29024 -13.80877 -13.54801 -13.36437 -13.05898 -12.85813 -12.82835 -12.74039 -12.68892 -12.66036 -12.41794 -12.21431 -12.02989 -11.85223 -11.61319 -11.51008 -11.35245 -11.30980 -10.93185 -10.58766 -9.95560 -9.72506 -9.29355 -8.98161 -7.94282 -5.22494 -0.82839 -0.42936 0.83929 1.44541 1.46022 1.49412 1.55301 1.74739 2.10762 2.55959 3.03116 3.10181 3.29447 3.39184 3.44726 3.49777 3.61198 3.69501 3.79435 3.83606 3.97746 4.14270 4.20892 4.26736 4.33062 4.34527 4.38809 4.47003 4.51109 4.66795 4.71168 4.73704 4.79473 4.87777 4.96140 4.98924 5.06130 5.06538 5.07908 5.21391 5.22321 5.30496 5.36356 5.41835 5.48871 5.49069 5.53494 5.86653 6.27586 6.34790 6.75341 6.92351 7.34277 8.11382 8.33136 9.29064 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.002259 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.345863 B =12391.923578 C =13085.117681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 C 0.165 3.835 4 N -0.743 5.743 5 C -0.243 4.243 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.274 1.274 13 C -0.111 4.111 14 C 0.088 3.912 15 N -0.606 5.606 16 C 0.570 3.430 17 O -0.584 6.584 18 C -0.198 4.198 19 C 0.168 3.832 20 N -0.498 5.498 21 C 0.115 3.885 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.116 4.116 25 C -0.085 4.085 26 C -0.125 4.125 27 C -0.006 4.006 28 C 0.129 3.871 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.013 0.987 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.184 0.816 46 H 0.038 0.962 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -26.597 20.042 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.070 4.070 3 C 0.039 3.961 4 N -0.386 5.386 5 C -0.375 4.375 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.200 1.200 13 C -0.149 4.149 14 C -0.032 4.032 15 N -0.338 5.338 16 C 0.360 3.640 17 O -0.465 6.465 18 C -0.203 4.203 19 C -0.006 4.006 20 N -0.206 5.206 21 C -0.006 4.006 22 C -0.143 4.143 23 C -0.095 4.095 24 C -0.133 4.133 25 C -0.104 4.104 26 C -0.126 4.126 27 C -0.031 4.031 28 C 0.006 3.994 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.184 0.816 45 H 0.201 0.799 46 H 0.057 0.943 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.030 -27.029 19.173 33.139 hybrid contribution -0.119 1.872 -1.418 2.352 sum -0.149 -25.157 17.755 30.792 Atomic orbital electron populations 1.21693 0.92224 1.02246 1.02046 1.21719 0.97029 0.93738 0.94484 1.20835 0.95743 0.90385 0.89180 1.42583 1.62421 1.11245 1.22377 1.19596 1.25153 0.89704 1.03045 0.90563 1.25569 1.01446 1.02519 0.97456 1.69809 1.42243 1.38062 1.11981 0.85223 0.77645 0.80251 0.76715 1.20763 1.22406 1.19971 1.22966 1.02986 0.91950 0.97023 1.23103 1.02407 0.98992 0.78745 1.48471 1.61660 1.10749 1.12930 1.18147 0.76928 0.84378 0.84580 1.90799 1.51399 1.83925 1.20377 1.20638 1.03273 0.94731 1.01673 1.22947 0.93757 0.87719 0.96130 1.68037 1.25740 1.15005 1.11828 1.19545 0.92582 0.95910 0.92524 1.21027 1.01765 0.93241 0.98272 1.21442 0.93202 1.01428 0.93472 1.21441 0.97895 0.93472 1.00542 1.21463 0.97948 0.97253 0.93697 1.19047 0.99238 0.94422 0.99931 1.22793 0.95044 0.95035 0.90252 1.21842 0.98920 0.81323 0.97364 0.90522 0.90757 0.95007 0.94501 0.96864 0.79334 0.94130 0.90314 0.85750 0.87457 0.88105 0.82405 0.84416 0.82040 0.81686 0.81559 0.79918 0.94314 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.29 8.25 71.98 0.59 -2.70 16 2 C -0.07 -1.95 0.61 -50.99 -0.03 -1.98 16 3 C 0.17 6.25 5.07 86.38 0.44 6.69 16 4 N -0.74 -37.52 5.15 -343.47 -1.77 -39.29 16 5 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 6 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 8 N -0.97 -60.81 13.06 21.65 0.28 -60.52 16 9 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 C -0.11 -1.97 6.04 32.07 0.19 -1.77 16 14 C 0.09 1.39 4.69 86.93 0.41 1.80 16 15 N -0.61 -16.69 3.32 -814.85 -2.71 -19.40 16 16 C 0.57 18.16 7.65 86.76 0.66 18.82 16 17 O -0.58 -24.56 16.93 -3.92 -0.07 -24.63 16 18 C -0.20 -4.94 5.68 -20.00 -0.11 -5.06 16 19 C 0.17 4.52 10.73 85.42 0.92 5.44 16 20 N -0.50 -12.89 10.30 -187.68 -1.93 -14.82 16 21 C 0.12 2.40 6.61 40.27 0.27 2.67 16 22 C -0.12 -1.89 9.97 22.34 0.22 -1.67 16 23 C -0.08 -0.63 9.94 22.05 0.22 -0.41 16 24 C -0.12 -0.72 9.96 22.05 0.22 -0.50 16 25 C -0.09 -0.74 9.77 22.34 0.22 -0.52 16 26 C -0.12 -2.03 5.74 -21.28 -0.12 -2.15 16 27 C -0.01 -0.09 7.93 23.01 0.18 0.09 16 28 C 0.13 4.45 5.48 86.73 0.48 4.93 16 29 H 0.08 1.54 7.44 -2.39 -0.02 1.52 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.03 1.09 7.11 -2.39 -0.02 1.07 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.01 0.53 8.13 -2.38 -0.02 0.51 16 34 H 0.37 20.32 6.37 -92.70 -0.59 19.73 16 35 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 37 H 0.12 1.37 8.04 -2.39 -0.02 1.35 16 38 H 0.11 1.01 6.42 -2.39 -0.02 1.00 16 39 H 0.10 1.20 6.81 -2.39 -0.02 1.19 16 40 H 0.16 4.36 7.82 -2.91 -0.02 4.34 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.17 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 45 H 0.18 1.87 4.65 -2.91 -0.01 1.86 16 46 H 0.04 1.64 7.82 -2.39 -0.02 1.62 16 47 H 0.05 1.83 7.84 -2.39 -0.02 1.82 16 Total: -1.00 -81.92 380.40 2.29 -79.63 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.41 Total: 23.22 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.06 Total: 6.75 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -6.13 Total: -134.04 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -81.92 2.29 -79.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569684358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.788 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds