Wall clock time and date at job start Tue Mar 31 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36536 * 120.87747 * 2 1 4 4 C 1.40245 * 119.82096 * 179.97438 * 3 2 1 5 5 C 1.48273 * 119.23867 * 179.72152 * 4 3 2 6 6 O 1.21504 * 120.00302 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99724 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99919 * 180.02562 * 7 5 4 9 9 C 1.53787 * 113.61254 * 254.13936 * 8 7 5 10 10 C 1.53956 * 87.01828 * 220.04777 * 9 8 7 11 11 C 1.52995 * 113.66891 * 139.93278 * 10 9 8 12 12 N 1.46494 * 109.47380 * 87.44132 * 11 10 9 13 13 C 1.36941 * 120.00122 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00255 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00010 * 179.97438 * 13 12 11 16 16 N 1.31628 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00320 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46634 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47506 * 119.99833 * 17 15 13 20 20 H 1.48501 * 109.47334 * 240.00469 * 17 15 13 21 21 C 1.53777 * 113.61466 * 156.52860 * 8 7 5 22 22 N 1.31896 * 121.51678 * 359.97438 * 4 3 2 23 23 C 1.33238 * 121.29987 * 0.02562 * 22 4 3 24 24 C 1.40835 * 120.98451 * 179.97438 * 23 22 4 25 25 C 1.35990 * 119.73764 * 179.97438 * 24 23 22 26 26 C 1.39442 * 121.08319 * 0.02562 * 25 24 23 27 27 C 1.36129 * 120.92300 * 359.93046 * 26 25 24 28 28 C 1.40422 * 119.65218 * 0.08604 * 27 26 25 29 29 H 1.08994 * 109.47031 * 90.00017 * 1 2 3 30 30 H 1.08997 * 109.46985 * 209.99966 * 1 2 3 31 31 H 1.08999 * 109.47407 * 329.99756 * 1 2 3 32 32 H 1.07999 * 120.08991 * 359.96106 * 3 2 1 33 33 H 0.96994 * 119.99935 * 359.97438 * 7 5 4 34 34 H 1.09005 * 112.84926 * 25.32878 * 8 7 5 35 35 H 1.09001 * 113.61143 * 334.56351 * 9 8 7 36 36 H 1.09001 * 113.61756 * 105.47042 * 9 8 7 37 37 H 1.09008 * 113.61364 * 270.80227 * 10 9 8 38 38 H 1.09000 * 109.47195 * 207.44109 * 11 10 9 39 39 H 1.08997 * 109.46847 * 327.43624 * 11 10 9 40 40 H 0.97000 * 119.99809 * 359.97438 * 12 11 10 41 41 H 0.96998 * 119.99930 * 180.02562 * 16 15 13 42 42 H 1.09000 * 113.61428 * 254.52186 * 21 8 7 43 43 H 1.08997 * 113.61538 * 25.35160 * 21 8 7 44 44 H 1.08003 * 120.13025 * 359.97044 * 24 23 22 45 45 H 1.07995 * 119.45496 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.53570 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.17314 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 -0.0058 6 8 3.7559 3.4816 -0.0118 7 7 5.7057 2.4192 -0.0048 8 6 6.4448 3.6841 -0.0104 9 6 7.0889 4.0151 -1.3671 10 6 8.3093 4.5174 -0.5743 11 6 9.6504 4.1408 -1.2071 12 7 10.0364 5.1659 -2.1799 13 6 11.2087 5.0416 -2.8768 14 1 11.8488 4.1881 -2.7090 15 6 11.5742 6.0127 -3.7988 16 7 10.7938 7.0527 -4.0037 17 14 13.1735 5.8436 -4.7490 18 1 13.8640 4.5949 -4.3375 19 1 12.8818 5.7921 -6.2042 20 1 14.0466 7.0096 -4.4601 21 6 7.8710 3.5667 0.5523 22 7 4.2785 0.0091 0.0016 23 6 3.6481 -1.1647 0.0016 24 6 4.3687 -2.3747 0.0022 25 6 3.6994 -3.5585 0.0027 26 6 2.3055 -3.5973 0.0022 27 6 1.5737 -2.4495 0.0026 28 6 2.2292 -1.2077 0.0016 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6836 2.1161 -0.0006 33 1 6.1863 1.5767 0.0004 34 1 5.8741 4.5097 0.4149 35 1 7.2966 3.1364 -1.9778 36 1 6.5705 4.8009 -1.9166 37 1 8.2503 5.5717 -0.3035 38 1 10.4120 4.0717 -0.4305 39 1 9.5569 3.1787 -1.7108 40 1 9.4613 5.9323 -2.3308 41 1 11.0491 7.7311 -4.6483 42 1 7.9831 3.9911 1.5500 43 1 8.2924 2.5650 0.4686 44 1 5.4487 -2.3626 0.0021 45 1 4.2565 -4.4836 0.0027 46 1 1.7994 -4.5515 0.0023 47 1 0.4946 -2.4937 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570565261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:38 Heat of formation + Delta-G solvation = 45.372874 kcal Electronic energy + Delta-G solvation = -27483.014003 eV Core-core repulsion = 23631.213747 eV Total energy + Delta-G solvation = -3851.800256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.48502 -39.99288 -38.44157 -37.17921 -35.27940 -34.50798 -33.21512 -31.22408 -30.82548 -30.67134 -28.28060 -26.93965 -25.46852 -25.29412 -24.00302 -23.20536 -22.03535 -21.31124 -20.47431 -19.49707 -18.46778 -18.18362 -17.38059 -17.00431 -16.11673 -15.76462 -15.52406 -15.19288 -14.99415 -14.68420 -14.56817 -14.48963 -14.16648 -13.78368 -13.55886 -13.38717 -13.31637 -13.09264 -12.92738 -12.64070 -12.23378 -12.13877 -12.09339 -11.84166 -11.75924 -11.57365 -11.13646 -10.84933 -10.73492 -10.63752 -10.40373 -10.29611 -10.06437 -9.90046 -9.75717 -9.58380 -9.24918 -8.95508 -8.80869 -8.65524 -6.85593 -5.71602 -2.99799 -0.21994 0.26838 1.49873 2.07775 2.94757 2.97673 3.46298 3.51500 3.54051 3.69343 3.72300 4.02360 4.22765 4.32098 4.38996 4.62018 4.67238 4.70392 4.72431 4.82585 4.86908 4.93307 5.02749 5.06727 5.09125 5.16087 5.24059 5.44451 5.54328 5.55871 5.62221 5.63869 5.75738 5.89134 5.91180 5.97021 5.98341 6.04749 6.10241 6.14010 6.28479 6.32777 6.36761 6.47156 6.65847 6.83301 6.97560 7.22616 7.53039 7.74643 8.06956 8.47586 9.58493 10.18142 10.52634 11.51411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.001899 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.799310 B =14743.747629 C =15587.235357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 C -0.129 4.129 4 C 0.124 3.876 5 C 0.568 3.432 6 O -0.531 6.531 7 N -0.694 5.694 8 C 0.115 3.885 9 C -0.138 4.138 10 C -0.110 4.110 11 C 0.165 3.835 12 N -0.732 5.732 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.017 4.017 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.136 4.136 22 N -0.447 5.447 23 C 0.127 3.873 24 C -0.084 4.084 25 C -0.104 4.104 26 C -0.109 4.109 27 C -0.102 4.102 28 C -0.087 4.087 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.411 0.589 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.234 -22.469 12.392 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C -0.150 4.150 4 C -0.029 4.029 5 C 0.352 3.648 6 O -0.407 6.407 7 N -0.344 5.344 8 C 0.011 3.989 9 C -0.176 4.176 10 C -0.129 4.129 11 C 0.038 3.962 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.175 4.175 22 N -0.159 5.159 23 C 0.004 3.996 24 C -0.103 4.103 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.089 4.089 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.247 0.753 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.158 0.842 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.553 -21.824 12.337 33.721 hybrid contribution 0.114 -0.236 -0.709 0.756 sum -22.439 -22.061 11.628 33.547 Atomic orbital electron populations 1.20886 0.89390 1.03841 1.03437 1.20150 0.96974 0.91640 0.95056 1.21629 0.93635 0.99751 0.99955 1.21380 0.91742 0.92175 0.97625 1.17931 0.82764 0.87177 0.76974 1.90789 1.68747 1.31117 1.50060 1.45927 1.05548 1.10490 1.72394 1.22788 0.91184 0.86324 0.98618 1.23484 0.96481 1.01731 0.95944 1.22566 0.95581 0.99366 0.95414 1.20600 0.91623 0.92518 0.91509 1.42366 1.24367 1.24902 1.45977 1.19287 0.97225 1.05127 1.15223 0.91194 1.24752 0.98864 0.97292 1.00322 1.69678 1.37891 1.12188 1.38452 0.86118 0.83236 0.77148 0.79710 1.20596 1.21917 1.21910 1.23330 0.94057 1.00968 0.99117 1.67810 1.39892 0.97390 1.10854 1.18835 0.89768 0.91987 0.99037 1.20914 1.00719 0.89918 0.98745 1.20960 0.94473 0.98168 0.98815 1.21017 0.94186 0.98622 0.98858 1.21032 1.00225 0.91083 0.99763 1.18842 0.93936 0.94366 1.01760 0.89904 0.90606 0.90265 0.83150 0.75313 0.86789 0.89703 0.90990 0.88788 0.96306 0.96324 0.78245 0.93616 0.90884 0.89553 0.84241 0.84991 0.85320 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.59 36.01 0.35 -0.25 16 2 C -0.03 -0.26 5.92 -104.30 -0.62 -0.87 16 3 C -0.13 -1.35 9.23 -39.44 -0.36 -1.71 16 4 C 0.12 1.52 6.75 -82.96 -0.56 0.96 16 5 C 0.57 7.90 7.81 -12.13 -0.09 7.81 16 6 O -0.53 -8.76 15.90 5.36 0.09 -8.67 16 7 N -0.69 -8.81 5.35 -53.82 -0.29 -9.10 16 8 C 0.11 1.55 4.21 -67.12 -0.28 1.26 16 9 C -0.14 -2.15 7.45 -25.82 -0.19 -2.34 16 10 C -0.11 -1.79 3.75 -89.71 -0.34 -2.12 16 11 C 0.17 3.36 6.10 -4.05 -0.02 3.34 16 12 N -0.73 -19.02 5.60 -59.92 -0.34 -19.36 16 13 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 16 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 17 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 C -0.14 -1.73 7.39 -25.92 -0.19 -1.92 16 22 N -0.45 -5.26 9.47 -7.54 -0.07 -5.33 16 23 C 0.13 1.33 6.61 -84.85 -0.56 0.76 16 24 C -0.08 -0.69 9.99 -39.41 -0.39 -1.09 16 25 C -0.10 -0.63 9.94 -39.94 -0.40 -1.03 16 26 C -0.11 -0.60 9.95 -39.89 -0.40 -1.00 16 27 C -0.10 -0.66 9.31 -39.52 -0.37 -1.02 16 28 C -0.09 -0.78 5.75 -106.72 -0.61 -1.40 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.26 6.51 -51.93 -0.34 -0.08 16 31 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 33 H 0.41 4.65 8.01 -40.82 -0.33 4.32 16 34 H 0.11 1.61 7.50 -51.93 -0.39 1.22 16 35 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 40 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 46 H 0.13 0.38 8.06 -52.48 -0.42 -0.05 16 47 H 0.13 0.52 6.43 -52.49 -0.34 0.18 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -34.49 392.15 -10.98 -45.47 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.69 Total: 9.56 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -5.29 Total: -8.16 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.03 Total: -61.93 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.49 -10.98 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570565261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.843 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds