Wall clock time and date at job start Tue Mar 31 2020 22:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36536 * 120.87747 * 2 1 4 4 C 1.40245 * 119.82096 * 179.97438 * 3 2 1 5 5 C 1.48273 * 119.23867 * 179.72152 * 4 3 2 6 6 O 1.21504 * 120.00302 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99724 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99919 * 180.02562 * 7 5 4 9 9 C 1.53787 * 113.61254 * 254.13936 * 8 7 5 10 10 C 1.53956 * 87.01828 * 220.04777 * 9 8 7 11 11 C 1.52995 * 113.66891 * 139.93278 * 10 9 8 12 12 N 1.46494 * 109.47380 * 87.44132 * 11 10 9 13 13 C 1.36941 * 120.00122 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00255 * 359.97438 * 13 12 11 15 15 C 1.38808 * 120.00010 * 179.97438 * 13 12 11 16 16 N 1.31628 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00320 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46634 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47506 * 119.99833 * 17 15 13 20 20 H 1.48501 * 109.47334 * 240.00469 * 17 15 13 21 21 C 1.53777 * 113.61466 * 156.52860 * 8 7 5 22 22 N 1.31896 * 121.51678 * 359.97438 * 4 3 2 23 23 C 1.33238 * 121.29987 * 0.02562 * 22 4 3 24 24 C 1.40835 * 120.98451 * 179.97438 * 23 22 4 25 25 C 1.35990 * 119.73764 * 179.97438 * 24 23 22 26 26 C 1.39442 * 121.08319 * 0.02562 * 25 24 23 27 27 C 1.36129 * 120.92300 * 359.93046 * 26 25 24 28 28 C 1.40422 * 119.65218 * 0.08604 * 27 26 25 29 29 H 1.08994 * 109.47031 * 90.00017 * 1 2 3 30 30 H 1.08997 * 109.46985 * 209.99966 * 1 2 3 31 31 H 1.08999 * 109.47407 * 329.99756 * 1 2 3 32 32 H 1.07999 * 120.08991 * 359.96106 * 3 2 1 33 33 H 0.96994 * 119.99935 * 359.97438 * 7 5 4 34 34 H 1.09005 * 112.84926 * 25.32878 * 8 7 5 35 35 H 1.09001 * 113.61143 * 334.56351 * 9 8 7 36 36 H 1.09001 * 113.61756 * 105.47042 * 9 8 7 37 37 H 1.09008 * 113.61364 * 270.80227 * 10 9 8 38 38 H 1.09000 * 109.47195 * 207.44109 * 11 10 9 39 39 H 1.08997 * 109.46847 * 327.43624 * 11 10 9 40 40 H 0.97000 * 119.99809 * 359.97438 * 12 11 10 41 41 H 0.96998 * 119.99930 * 180.02562 * 16 15 13 42 42 H 1.09000 * 113.61428 * 254.52186 * 21 8 7 43 43 H 1.08997 * 113.61538 * 25.35160 * 21 8 7 44 44 H 1.08003 * 120.13025 * 359.97044 * 24 23 22 45 45 H 1.07995 * 119.45496 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.53570 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.17314 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 -0.0058 6 8 3.7559 3.4816 -0.0118 7 7 5.7057 2.4192 -0.0048 8 6 6.4448 3.6841 -0.0104 9 6 7.0889 4.0151 -1.3671 10 6 8.3093 4.5174 -0.5743 11 6 9.6504 4.1408 -1.2071 12 7 10.0364 5.1659 -2.1799 13 6 11.2087 5.0416 -2.8768 14 1 11.8488 4.1881 -2.7090 15 6 11.5742 6.0127 -3.7988 16 7 10.7938 7.0527 -4.0037 17 14 13.1735 5.8436 -4.7490 18 1 13.8640 4.5949 -4.3375 19 1 12.8818 5.7921 -6.2042 20 1 14.0466 7.0096 -4.4601 21 6 7.8710 3.5667 0.5523 22 7 4.2785 0.0091 0.0016 23 6 3.6481 -1.1647 0.0016 24 6 4.3687 -2.3747 0.0022 25 6 3.6994 -3.5585 0.0027 26 6 2.3055 -3.5973 0.0022 27 6 1.5737 -2.4495 0.0026 28 6 2.2292 -1.2077 0.0016 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6836 2.1161 -0.0006 33 1 6.1863 1.5767 0.0004 34 1 5.8741 4.5097 0.4149 35 1 7.2966 3.1364 -1.9778 36 1 6.5705 4.8009 -1.9166 37 1 8.2503 5.5717 -0.3035 38 1 10.4120 4.0717 -0.4305 39 1 9.5569 3.1787 -1.7108 40 1 9.4613 5.9323 -2.3308 41 1 11.0491 7.7311 -4.6483 42 1 7.9831 3.9911 1.5500 43 1 8.2924 2.5650 0.4686 44 1 5.4487 -2.3626 0.0021 45 1 4.2565 -4.4836 0.0027 46 1 1.7994 -4.5515 0.0023 47 1 0.4946 -2.4937 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570565261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:36 Heat of formation + Delta-G solvation = 23.436346 kcal Electronic energy + Delta-G solvation = -27483.965242 eV Core-core repulsion = 23631.213747 eV Total energy + Delta-G solvation = -3852.751495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.19615 -41.06137 -39.58892 -37.87159 -36.38123 -35.88366 -34.55695 -32.84442 -31.77240 -31.31529 -28.82797 -28.55486 -26.67422 -26.35015 -24.96199 -24.56604 -23.09707 -22.32359 -21.50306 -20.75003 -19.19572 -19.10721 -18.88505 -18.11313 -17.31741 -16.66440 -16.50707 -16.45125 -16.14745 -15.75400 -15.43973 -15.39136 -15.12827 -15.10156 -14.83209 -14.59978 -14.33768 -13.98432 -13.92475 -13.40772 -13.30472 -13.05568 -13.01396 -12.96201 -12.80091 -12.68507 -12.62132 -12.36184 -12.20316 -12.09030 -11.89005 -11.43324 -11.41633 -11.28773 -11.22075 -10.90337 -10.63679 -10.15196 -9.83350 -9.22669 -8.98704 -7.95177 -5.24046 -0.89303 -0.38245 0.88225 1.30527 1.46357 1.47794 1.57939 1.95715 2.17008 2.55817 2.91288 3.03653 3.37431 3.47148 3.52701 3.57231 3.58776 3.72332 3.82618 3.86465 3.89379 4.13049 4.19693 4.28723 4.30502 4.46767 4.48671 4.51538 4.63475 4.66277 4.73738 4.77844 4.86570 4.93749 4.96663 4.99109 5.01268 5.07982 5.09492 5.13013 5.20744 5.37599 5.39196 5.44414 5.48815 5.50485 5.59414 5.84808 6.27311 6.30910 6.64610 7.02875 7.32973 8.10736 8.33253 9.28754 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017239 B = 0.001899 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.799310 B =14743.747629 C =15587.235357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.151 4.151 4 C 0.100 3.900 5 C 0.566 3.434 6 O -0.565 6.565 7 N -0.687 5.687 8 C 0.125 3.875 9 C -0.140 4.140 10 C -0.110 4.110 11 C 0.164 3.836 12 N -0.747 5.747 13 C -0.244 4.244 14 H 0.077 0.923 15 C -0.081 4.081 16 N -0.971 5.971 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.294 1.294 20 H -0.292 1.292 21 C -0.114 4.114 22 N -0.461 5.461 23 C 0.100 3.900 24 C -0.108 4.108 25 C -0.093 4.093 26 C -0.103 4.103 27 C -0.105 4.105 28 C -0.101 4.101 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.418 0.582 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.196 -26.095 13.241 37.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.172 4.172 4 C -0.052 4.052 5 C 0.351 3.649 6 O -0.444 6.444 7 N -0.336 5.336 8 C 0.021 3.979 9 C -0.179 4.179 10 C -0.129 4.129 11 C 0.038 3.962 12 N -0.389 5.389 13 C -0.376 4.376 14 H 0.095 0.905 15 C -0.273 4.273 16 N -0.622 5.622 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.221 1.221 20 H -0.220 1.220 21 C -0.152 4.152 22 N -0.174 5.174 23 C -0.023 4.023 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.256 0.744 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.159 0.841 45 H 0.178 0.822 46 H 0.182 0.818 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.501 -25.507 13.219 37.117 hybrid contribution 0.341 0.675 -0.952 1.216 sum -23.160 -24.831 12.267 36.104 Atomic orbital electron populations 1.21007 0.86671 1.05215 1.04531 1.20548 0.98771 0.90760 0.92894 1.21671 0.93104 1.00622 1.01819 1.21165 0.92379 0.91598 1.00077 1.18269 0.82931 0.87610 0.76057 1.90753 1.69395 1.32479 1.51754 1.45838 1.05375 1.10472 1.71937 1.22561 0.91729 0.86627 0.97021 1.23469 0.96580 1.01006 0.96856 1.22459 0.93522 0.99876 0.97073 1.20771 0.93716 0.91169 0.90560 1.42615 1.23660 1.25744 1.46879 1.19714 0.97964 1.04962 1.14958 0.90527 1.25632 1.02492 0.97285 1.01868 1.69842 1.39862 1.13114 1.39394 0.85031 0.79156 0.77517 0.77804 1.18876 1.22088 1.21955 1.23229 0.92455 1.00820 0.98702 1.67715 1.40477 0.97768 1.11429 1.19275 0.91052 0.92063 0.99938 1.21091 1.01117 0.90081 1.00398 1.21377 0.95215 0.98342 0.96287 1.21487 0.93972 0.99850 0.96728 1.21396 1.01798 0.90111 0.98984 1.19148 0.93575 0.95737 1.01833 0.88706 0.88415 0.89737 0.83482 0.74434 0.87388 0.90127 0.92747 0.89510 0.95753 0.96046 0.79564 0.94055 0.88837 0.87964 0.84074 0.82182 0.81849 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.59 71.24 0.68 -0.24 16 2 C -0.02 -0.35 5.92 -19.66 -0.12 -0.47 16 3 C -0.15 -3.32 9.23 22.36 0.21 -3.11 16 4 C 0.10 2.59 6.75 42.29 0.29 2.88 16 5 C 0.57 16.62 7.81 86.91 0.68 17.30 16 6 O -0.57 -19.76 15.90 -3.73 -0.06 -19.82 16 7 N -0.69 -17.89 5.35 -442.48 -2.37 -20.25 16 8 C 0.13 3.41 4.21 45.52 0.19 3.60 16 9 C -0.14 -4.52 7.45 31.18 0.23 -4.29 16 10 C -0.11 -3.59 3.75 -10.21 -0.04 -3.63 16 11 C 0.16 6.67 6.10 86.38 0.53 7.20 16 12 N -0.75 -39.45 5.60 -343.48 -1.92 -41.38 16 13 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 14 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 15 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 16 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 17 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 C -0.11 -2.76 7.39 31.12 0.23 -2.53 16 22 N -0.46 -11.23 9.47 -177.77 -1.68 -12.92 16 23 C 0.10 2.07 6.61 40.49 0.27 2.34 16 24 C -0.11 -1.66 9.99 22.38 0.22 -1.44 16 25 C -0.09 -0.84 9.94 22.04 0.22 -0.62 16 26 C -0.10 -0.72 9.95 22.07 0.22 -0.50 16 27 C -0.10 -0.99 9.31 22.31 0.21 -0.79 16 28 C -0.10 -1.68 5.75 -21.22 -0.12 -1.81 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 0.33 6.51 -2.39 -0.02 0.32 16 31 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 32 H 0.15 3.14 7.60 -2.91 -0.02 3.12 16 33 H 0.42 9.58 8.01 -92.71 -0.74 8.84 16 34 H 0.11 3.14 7.50 -2.38 -0.02 3.12 16 35 H 0.08 2.65 7.90 -2.39 -0.02 2.63 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 40 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 41 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.10 2.20 8.07 -2.39 -0.02 2.18 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 46 H 0.16 0.05 8.06 -2.91 -0.02 0.02 16 47 H 0.16 0.54 6.43 -2.91 -0.02 0.52 16 Total: -1.00 -77.02 392.15 1.03 -75.99 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.44 Total: 33.81 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.20 Total: -3.66 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -5.69 Total: -135.65 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.02 1.03 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570565261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.424 kcal (2) G-P(sol) polarization free energy of solvation -77.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds