Wall clock time and date at job start Tue Mar 31 2020 23:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39675 * 126.07080 * 2 1 4 4 C 1.38405 * 105.35684 * 180.10691 * 3 2 1 5 5 C 1.47164 * 126.88481 * 179.91354 * 4 3 2 6 6 O 1.21627 * 120.00357 * 182.65786 * 5 4 3 7 7 N 1.34777 * 119.99757 * 2.66082 * 5 4 3 8 8 C 1.46504 * 120.00048 * 174.88908 * 7 5 4 9 9 C 1.52997 * 109.46942 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47042 * 294.99821 * 9 8 7 11 11 C 1.53001 * 109.47001 * 175.00482 * 9 8 7 12 12 O 1.42899 * 109.46907 * 305.00002 * 11 9 8 13 13 N 1.46896 * 109.47492 * 55.00386 * 9 8 7 14 14 C 1.46892 * 111.00149 * 204.99865 * 13 9 8 15 15 C 1.50702 * 109.47363 * 179.97438 * 14 13 9 16 16 O 1.21302 * 119.99615 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00568 * 179.72165 * 15 14 13 18 18 C 1.37095 * 120.00328 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99695 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99871 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47083 * 59.99780 * 22 20 18 24 24 H 1.48502 * 109.46676 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47141 * 299.99600 * 22 20 18 26 26 N 1.36600 * 106.23516 * 359.65285 * 4 3 2 27 27 C 1.46497 * 125.19425 * 180.20467 * 26 4 3 28 28 N 1.28446 * 109.61586 * 0.22340 * 26 4 3 29 29 H 1.09003 * 109.47063 * 270.27165 * 1 2 3 30 30 H 1.09007 * 109.46923 * 30.26757 * 1 2 3 31 31 H 1.08998 * 109.47446 * 150.26567 * 1 2 3 32 32 H 1.07991 * 127.32264 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99878 * 354.89227 * 7 5 4 34 34 H 1.09001 * 109.46700 * 60.00296 * 8 7 5 35 35 H 1.08999 * 109.47019 * 300.00115 * 8 7 5 36 36 H 1.08998 * 109.47611 * 64.99674 * 11 9 8 37 37 H 1.09000 * 109.47595 * 185.00388 * 11 9 8 38 38 H 0.96702 * 114.00118 * 179.97438 * 12 11 9 39 39 H 1.00907 * 110.99853 * 328.95508 * 13 9 8 40 40 H 1.09004 * 109.47419 * 59.99980 * 14 13 9 41 41 H 1.09000 * 109.47413 * 299.99396 * 14 13 9 42 42 H 0.97000 * 119.99823 * 0.02562 * 17 15 14 43 43 H 0.96993 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.46592 * 85.12852 * 27 26 4 45 45 H 1.08992 * 109.47521 * 205.12342 * 27 26 4 46 46 H 1.09001 * 109.47257 * 325.13101 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6394 -0.0025 5 6 4.8665 1.4280 -0.0053 6 8 5.9437 0.8655 -0.0561 7 7 4.8108 2.7735 0.0486 8 6 6.0457 3.5540 0.1589 9 6 5.7046 5.0449 0.2005 10 1 5.2593 5.3424 -0.7489 11 6 6.9811 5.8536 0.4405 12 8 7.6270 5.3834 1.6253 13 7 4.7520 5.2992 1.2894 14 6 3.9606 6.5082 1.0249 15 6 2.9964 6.7358 2.1605 16 8 2.9713 5.9667 3.0982 17 7 2.1662 7.7973 2.1372 18 6 1.2887 8.0040 3.1700 19 1 1.2623 7.3160 4.0021 20 6 0.4324 9.0981 3.1457 21 7 0.4641 9.9349 2.1330 22 14 -0.7628 9.3801 4.5534 23 1 -0.0056 9.5452 5.8200 24 1 -1.5581 10.6061 4.2892 25 1 -1.6744 8.2137 4.6699 26 7 3.5173 -0.7224 0.0041 27 6 4.6449 -1.6576 0.0086 28 7 2.2774 -1.0578 0.0055 29 1 -0.3633 0.0049 1.0277 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8923 -0.5097 32 1 2.0208 2.1638 0.0004 33 1 3.9529 3.2252 0.0144 34 1 6.6818 3.3511 -0.7027 35 1 6.5712 3.2755 1.0723 36 1 7.6519 5.7348 -0.4104 37 1 6.7272 6.9069 0.5588 38 1 8.4456 5.8517 1.8393 39 1 4.1534 4.5009 1.4399 40 1 3.4043 6.3824 0.0961 41 1 4.6268 7.3663 0.9361 42 1 2.1891 8.4145 1.3893 43 1 -0.1333 10.6988 2.1161 44 1 4.9803 -1.8173 1.0333 45 1 4.3306 -2.6078 -0.4231 46 1 5.4628 -1.2434 -0.5811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571422676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:25 Heat of formation + Delta-G solvation = -35.679879 kcal Electronic energy + Delta-G solvation = -29336.680903 eV Core-core repulsion = 25070.516673 eV Total energy + Delta-G solvation = -4266.164230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.70885 -39.79453 -38.51934 -37.54753 -35.67283 -34.44950 -34.01681 -33.62547 -31.51584 -31.20866 -29.92093 -29.83130 -26.38289 -26.16716 -25.63713 -24.02473 -23.08314 -21.17192 -20.69475 -19.80489 -19.28495 -18.10480 -17.85394 -17.51005 -16.57802 -16.51557 -16.45021 -15.55162 -15.46834 -15.29514 -14.62934 -14.57801 -14.40026 -14.08419 -13.88103 -13.73794 -13.66350 -13.59048 -13.36835 -13.29553 -12.61602 -12.55959 -12.49245 -12.42623 -12.25982 -11.85382 -11.62782 -11.49780 -11.10726 -11.02811 -10.85647 -10.45886 -10.29772 -10.23745 -9.96026 -9.52413 -9.46627 -9.15991 -9.00536 -8.49974 -8.14741 -7.98983 -6.44359 -3.85142 1.06486 2.16131 2.37894 2.94200 3.04440 3.18706 3.24674 3.29151 3.85674 3.95549 4.19922 4.25675 4.28266 4.33000 4.61489 4.82661 4.89057 4.94546 5.01698 5.13436 5.20173 5.20691 5.23419 5.29657 5.31626 5.42071 5.51591 5.53242 5.57758 5.66641 5.70473 5.82677 5.86822 5.93787 6.11306 6.21910 6.33627 6.56001 7.07825 7.11840 7.49981 7.52902 7.70508 7.81499 7.93308 8.03221 8.58233 9.15361 9.50915 10.02426 10.73264 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.002942 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.506359 B = 9514.773159 C =12065.576041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.025 3.975 3 C -0.181 4.181 4 C -0.039 4.039 5 C 0.597 3.403 6 O -0.541 6.541 7 N -0.715 5.715 8 C 0.124 3.876 9 C 0.075 3.925 10 H 0.062 0.938 11 C 0.092 3.908 12 O -0.554 6.554 13 N -0.653 5.653 14 C 0.047 3.953 15 C 0.440 3.560 16 O -0.580 6.580 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.258 5.258 27 C 0.088 3.912 28 N -0.278 5.278 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.402 0.598 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.373 0.627 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -13.894 -10.805 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.131 4.131 3 C -0.210 4.210 4 C -0.167 4.167 5 C 0.383 3.617 6 O -0.419 6.419 7 N -0.367 5.367 8 C 0.001 3.999 9 C -0.035 4.035 10 H 0.080 0.920 11 C 0.012 3.988 12 O -0.358 6.358 13 N -0.289 5.289 14 C -0.085 4.085 15 C 0.225 3.775 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.045 5.045 27 C -0.052 4.052 28 N -0.112 5.112 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.171 0.829 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.294 -15.989 -9.819 20.939 hybrid contribution -1.086 1.932 -0.514 2.276 sum 8.207 -14.057 -10.333 19.280 Atomic orbital electron populations 1.20117 0.86202 1.03216 1.03110 1.22032 0.97249 0.88660 1.05174 1.22190 0.90274 1.00562 1.08016 1.21319 0.95583 0.85433 1.14399 1.16808 0.86585 0.82014 0.76331 1.90778 1.29811 1.70773 1.50552 1.45712 1.10953 1.05567 1.74482 1.21552 0.85666 0.88859 1.03809 1.21897 0.94174 0.93838 0.93641 0.92011 1.22066 0.92362 0.97186 0.87160 1.86603 1.41871 1.62777 1.44556 1.60015 1.21135 1.06368 1.41353 1.21800 0.95612 0.94367 0.96761 1.19744 0.84448 0.84406 0.88923 1.90551 1.71710 1.47519 1.36555 1.41845 1.32977 1.23263 1.21847 1.19657 1.12969 1.09560 1.00733 0.87954 1.25253 0.98646 0.95722 0.98224 1.69597 1.39376 1.14793 1.30599 0.85924 0.79881 0.77660 0.80815 1.19876 1.20983 1.19861 1.45506 1.05132 1.04222 1.49669 1.22313 0.85583 0.92403 1.04936 1.73136 0.89404 1.27885 1.20765 0.90559 0.90302 0.91069 0.82076 0.76205 0.90622 0.88804 0.93619 0.92929 0.78056 0.82948 0.93824 0.89532 0.77508 0.91808 0.89712 0.88836 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.24 16 2 C 0.02 0.30 7.22 -82.47 -0.60 -0.29 16 3 C -0.18 -2.17 10.44 -38.98 -0.41 -2.58 16 4 C -0.04 -0.50 6.96 -82.06 -0.57 -1.07 16 5 C 0.60 7.85 7.80 -12.64 -0.10 7.75 16 6 O -0.54 -8.09 14.79 5.25 0.08 -8.01 16 7 N -0.71 -8.19 4.98 -61.47 -0.31 -8.50 16 8 C 0.12 1.42 5.20 -4.04 -0.02 1.40 16 9 C 0.08 0.84 2.60 -67.72 -0.18 0.67 16 10 H 0.06 0.58 7.80 -51.93 -0.40 0.18 16 11 C 0.09 0.94 6.80 37.16 0.25 1.19 16 12 O -0.55 -6.55 12.64 -35.23 -0.45 -7.00 16 13 N -0.65 -9.95 5.87 -108.00 -0.63 -10.58 16 14 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 15 C 0.44 9.99 7.82 -10.99 -0.09 9.90 16 16 O -0.58 -15.44 15.78 5.54 0.09 -15.36 16 17 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 N -0.26 -3.26 3.75 -63.88 -0.24 -3.49 16 27 C 0.09 0.82 10.71 59.85 0.64 1.46 16 28 N -0.28 -3.66 11.90 33.64 0.40 -3.26 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.16 1.59 7.58 -52.49 -0.40 1.20 16 33 H 0.40 4.16 6.40 -40.82 -0.26 3.90 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.30 7.40 -51.93 -0.38 0.92 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 38 H 0.37 2.75 9.12 45.56 0.42 3.16 16 39 H 0.35 5.54 6.41 -39.29 -0.25 5.29 16 40 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 42 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.11 1.02 6.54 -51.93 -0.34 0.68 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -35.77 390.42 -6.09 -41.86 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -5.60 Total: 18.78 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -0.96 Total: 11.10 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.11 Total: -63.00 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.28 Total: -30.37 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.77 -6.09 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571422676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.179 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds