Wall clock time and date at job start Tue Mar 31 2020 23:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39675 * 126.07080 * 2 1 4 4 C 1.38405 * 105.35684 * 180.10691 * 3 2 1 5 5 C 1.47164 * 126.88481 * 179.91354 * 4 3 2 6 6 O 1.21627 * 120.00357 * 182.65786 * 5 4 3 7 7 N 1.34777 * 119.99757 * 2.66082 * 5 4 3 8 8 C 1.46504 * 120.00048 * 174.88908 * 7 5 4 9 9 C 1.52997 * 109.46942 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47042 * 294.99821 * 9 8 7 11 11 C 1.53001 * 109.47001 * 175.00482 * 9 8 7 12 12 O 1.42899 * 109.46907 * 305.00002 * 11 9 8 13 13 N 1.46896 * 109.47492 * 55.00386 * 9 8 7 14 14 C 1.46892 * 111.00149 * 204.99865 * 13 9 8 15 15 C 1.50702 * 109.47363 * 179.97438 * 14 13 9 16 16 O 1.21302 * 119.99615 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00568 * 179.72165 * 15 14 13 18 18 C 1.37095 * 120.00328 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99695 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00103 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99871 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99825 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47083 * 59.99780 * 22 20 18 24 24 H 1.48502 * 109.46676 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47141 * 299.99600 * 22 20 18 26 26 N 1.36600 * 106.23516 * 359.65285 * 4 3 2 27 27 C 1.46497 * 125.19425 * 180.20467 * 26 4 3 28 28 N 1.28446 * 109.61586 * 0.22340 * 26 4 3 29 29 H 1.09003 * 109.47063 * 270.27165 * 1 2 3 30 30 H 1.09007 * 109.46923 * 30.26757 * 1 2 3 31 31 H 1.08998 * 109.47446 * 150.26567 * 1 2 3 32 32 H 1.07991 * 127.32264 * 0.02562 * 3 2 1 33 33 H 0.97004 * 119.99878 * 354.89227 * 7 5 4 34 34 H 1.09001 * 109.46700 * 60.00296 * 8 7 5 35 35 H 1.08999 * 109.47019 * 300.00115 * 8 7 5 36 36 H 1.08998 * 109.47611 * 64.99674 * 11 9 8 37 37 H 1.09000 * 109.47595 * 185.00388 * 11 9 8 38 38 H 0.96702 * 114.00118 * 179.97438 * 12 11 9 39 39 H 1.00907 * 110.99853 * 328.95508 * 13 9 8 40 40 H 1.09004 * 109.47419 * 59.99980 * 14 13 9 41 41 H 1.09000 * 109.47413 * 299.99396 * 14 13 9 42 42 H 0.97000 * 119.99823 * 0.02562 * 17 15 14 43 43 H 0.96993 * 120.00246 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.46592 * 85.12852 * 27 26 4 45 45 H 1.08992 * 109.47521 * 205.12342 * 27 26 4 46 46 H 1.09001 * 109.47257 * 325.13101 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6394 -0.0025 5 6 4.8665 1.4280 -0.0053 6 8 5.9437 0.8655 -0.0561 7 7 4.8108 2.7735 0.0486 8 6 6.0457 3.5540 0.1589 9 6 5.7046 5.0449 0.2005 10 1 5.2593 5.3424 -0.7489 11 6 6.9811 5.8536 0.4405 12 8 7.6270 5.3834 1.6253 13 7 4.7520 5.2992 1.2894 14 6 3.9606 6.5082 1.0249 15 6 2.9964 6.7358 2.1605 16 8 2.9713 5.9667 3.0982 17 7 2.1662 7.7973 2.1372 18 6 1.2887 8.0040 3.1700 19 1 1.2623 7.3160 4.0021 20 6 0.4324 9.0981 3.1457 21 7 0.4641 9.9349 2.1330 22 14 -0.7628 9.3801 4.5534 23 1 -0.0056 9.5452 5.8200 24 1 -1.5581 10.6061 4.2892 25 1 -1.6744 8.2137 4.6699 26 7 3.5173 -0.7224 0.0041 27 6 4.6449 -1.6576 0.0086 28 7 2.2774 -1.0578 0.0055 29 1 -0.3633 0.0049 1.0277 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8923 -0.5097 32 1 2.0208 2.1638 0.0004 33 1 3.9529 3.2252 0.0144 34 1 6.6818 3.3511 -0.7027 35 1 6.5712 3.2755 1.0723 36 1 7.6519 5.7348 -0.4104 37 1 6.7272 6.9069 0.5588 38 1 8.4456 5.8517 1.8393 39 1 4.1534 4.5009 1.4399 40 1 3.4043 6.3824 0.0961 41 1 4.6268 7.3663 0.9361 42 1 2.1891 8.4145 1.3893 43 1 -0.1333 10.6988 2.1161 44 1 4.9803 -1.8173 1.0333 45 1 4.3306 -2.6078 -0.4231 46 1 5.4628 -1.2434 -0.5811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571422676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:24 Heat of formation + Delta-G solvation = -67.290798 kcal Electronic energy + Delta-G solvation = -29338.051655 eV Core-core repulsion = 25070.516673 eV Total energy + Delta-G solvation = -4267.534982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62425 -40.82080 -40.10426 -38.71422 -36.62215 -35.97009 -35.28373 -34.74208 -33.24209 -32.44731 -30.96618 -30.58791 -27.91067 -27.10202 -26.44542 -25.69089 -24.03437 -22.08644 -21.65242 -21.13115 -20.62735 -19.88979 -18.95828 -18.37187 -17.84615 -17.47299 -17.43776 -17.00547 -16.50674 -16.47491 -16.29951 -15.86111 -15.61454 -15.24220 -15.16808 -14.76748 -14.63388 -14.53916 -14.37768 -14.16693 -14.01236 -13.53413 -13.41486 -13.32254 -13.27291 -13.17458 -13.05474 -12.89382 -12.67029 -12.40404 -12.11324 -11.98634 -11.77087 -11.47729 -11.31216 -10.74610 -10.45511 -10.30935 -10.10124 -9.98330 -9.88565 -9.30726 -8.44339 -5.92288 0.10059 1.29478 1.41275 1.43701 1.46247 1.53812 2.00136 2.08510 2.10412 2.30765 2.85464 3.23578 3.37810 3.45232 3.46086 3.49838 3.78523 3.98488 4.15025 4.24196 4.27537 4.31845 4.35967 4.40169 4.48556 4.55543 4.57078 4.57687 4.63661 4.72554 4.80575 4.85557 4.96266 5.00055 5.08530 5.18428 5.43641 5.49243 5.69801 5.89571 6.11083 6.18141 6.32641 6.63540 6.85563 6.99304 7.09204 7.16073 7.60036 8.16031 8.72694 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009156 B = 0.002942 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.506359 B = 9514.773159 C =12065.576041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.013 3.987 3 C -0.185 4.185 4 C -0.055 4.055 5 C 0.596 3.404 6 O -0.564 6.564 7 N -0.706 5.706 8 C 0.132 3.868 9 C 0.077 3.923 10 H 0.092 0.908 11 C 0.088 3.912 12 O -0.582 6.582 13 N -0.673 5.673 14 C 0.063 3.937 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.572 5.572 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.919 5.919 22 Si 0.988 3.012 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 N -0.266 5.266 27 C 0.083 3.917 28 N -0.295 5.295 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.408 0.592 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.390 0.610 39 H 0.342 0.658 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -13.296 -12.082 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.143 4.143 3 C -0.214 4.214 4 C -0.184 4.184 5 C 0.382 3.618 6 O -0.444 6.444 7 N -0.358 5.358 8 C 0.008 3.992 9 C -0.032 4.032 10 H 0.109 0.891 11 C 0.009 3.991 12 O -0.390 6.390 13 N -0.309 5.309 14 C -0.070 4.070 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.209 5.209 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.560 5.560 22 Si 0.812 3.188 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.196 1.196 26 N -0.053 5.053 27 C -0.056 4.056 28 N -0.130 5.130 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.196 0.804 33 H 0.245 0.755 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.239 0.761 39 H 0.162 0.838 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.223 -15.361 -11.126 21.091 hybrid contribution -0.992 1.707 -0.117 1.978 sum 8.230 -13.654 -11.243 19.508 Atomic orbital electron populations 1.20224 0.84272 1.04369 1.03652 1.22585 0.98620 0.88460 1.04615 1.22485 0.89948 1.01462 1.07487 1.21455 0.95846 0.85882 1.15206 1.16900 0.86374 0.82454 0.76075 1.90760 1.30541 1.71268 1.51835 1.45658 1.11431 1.05068 1.73621 1.21479 0.85539 0.89003 1.03140 1.22061 0.93857 0.93692 0.93606 0.89067 1.22208 0.92400 0.96685 0.87809 1.86560 1.43143 1.63703 1.45547 1.60004 1.21304 1.05678 1.43880 1.21663 0.94771 0.95684 0.94832 1.20893 0.84095 0.82723 0.89788 1.90522 1.72870 1.48729 1.38857 1.41897 1.33310 1.24167 1.21538 1.19595 1.15003 1.10172 1.01446 0.90515 1.25958 0.99612 0.95038 1.00398 1.69649 1.39846 1.14955 1.31564 0.85057 0.77898 0.77945 0.77884 1.20037 1.19530 1.19610 1.45812 1.05511 1.04555 1.49421 1.22482 0.84883 0.92823 1.05387 1.73119 0.89826 1.28582 1.21439 0.90228 0.88799 0.90295 0.80428 0.75460 0.89062 0.91471 0.90378 0.92987 0.76133 0.83752 0.90484 0.87689 0.76902 0.91328 0.89258 0.86773 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.45 71.24 0.74 -0.38 16 2 C 0.01 0.30 7.22 43.05 0.31 0.61 16 3 C -0.18 -4.29 10.44 22.66 0.24 -4.06 16 4 C -0.06 -1.41 6.96 40.79 0.28 -1.13 16 5 C 0.60 15.46 7.80 86.59 0.68 16.13 16 6 O -0.56 -16.83 14.79 -4.12 -0.06 -16.89 16 7 N -0.71 -15.42 4.98 -466.63 -2.32 -17.74 16 8 C 0.13 2.80 5.20 86.38 0.45 3.25 16 9 C 0.08 1.54 2.60 44.92 0.12 1.65 16 10 H 0.09 1.33 7.80 -2.39 -0.02 1.31 16 11 C 0.09 1.55 6.80 71.98 0.49 2.04 16 12 O -0.58 -12.97 12.64 -148.98 -1.88 -14.85 16 13 N -0.67 -19.42 5.87 -495.60 -2.91 -22.33 16 14 C 0.06 1.90 5.96 85.56 0.51 2.41 16 15 C 0.44 19.77 7.82 87.66 0.69 20.46 16 16 O -0.62 -33.78 15.78 -3.10 -0.05 -33.83 16 17 N -0.57 -28.07 5.29 -306.97 -1.62 -29.69 16 18 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 19 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 20 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 21 N -0.92 -48.28 13.05 21.66 0.28 -47.99 16 22 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 N -0.27 -6.65 3.75 -356.03 -1.33 -7.98 16 27 C 0.08 1.54 10.71 127.77 1.37 2.91 16 28 N -0.29 -7.67 11.90 -47.49 -0.57 -8.24 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.18 3.31 7.58 -2.92 -0.02 3.29 16 33 H 0.41 7.89 6.40 -92.71 -0.59 7.30 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.84 7.40 -2.39 -0.02 1.82 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.93 7.35 -2.39 -0.02 0.91 16 38 H 0.39 5.21 9.12 -74.06 -0.68 4.54 16 39 H 0.34 10.55 6.41 -89.69 -0.58 9.98 16 40 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 41 H 0.11 2.85 7.36 -2.39 -0.02 2.84 16 42 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 43 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 1.99 6.54 -2.39 -0.02 1.98 16 Total: -1.00 -78.07 390.42 -2.80 -80.86 By element: Atomic # 1 Polarization: 49.73 SS G_CDS: -1.51 Total: 48.22 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 7.15 Total: 26.21 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -8.47 Total: -133.97 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -1.99 Total: -65.57 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -78.07 -2.80 -80.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571422676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.572 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds