Wall clock time and date at job start Tue Mar 31 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35366 * 126.38860 * 2 1 4 4 C 1.41498 * 105.50694 * 180.14473 * 3 2 1 5 5 C 1.47706 * 126.51701 * 179.84727 * 4 3 2 6 6 O 1.21566 * 120.00561 * 5.77007 * 5 4 3 7 7 N 1.34779 * 119.99645 * 185.78074 * 5 4 3 8 8 C 1.46507 * 120.00186 * 356.12881 * 7 5 4 9 9 C 1.46497 * 120.00131 * 176.13709 * 7 5 4 10 10 C 1.52995 * 109.47480 * 89.99383 * 9 7 5 11 11 H 1.08992 * 109.47441 * 60.00412 * 10 9 7 12 12 O 1.42900 * 109.47102 * 299.99836 * 10 9 7 13 13 C 1.53006 * 109.47128 * 180.02562 * 10 9 7 14 14 N 1.46896 * 109.46990 * 185.00195 * 13 10 9 15 15 C 1.46905 * 110.99782 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.46990 * 179.97438 * 15 14 13 17 17 O 1.21291 * 119.99921 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99932 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00029 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99448 * 359.97438 * 19 18 16 21 21 C 1.38940 * 120.00021 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00289 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00266 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47088 * 89.99772 * 23 21 19 25 25 H 1.48498 * 109.47605 * 210.00278 * 23 21 19 26 26 H 1.48505 * 109.46784 * 330.00325 * 23 21 19 27 27 N 1.31811 * 106.96204 * 359.58075 * 4 3 2 28 28 N 1.28470 * 110.07147 * 0.26508 * 27 4 3 29 29 H 0.97005 * 124.88358 * 179.97438 * 28 27 4 30 30 H 1.09003 * 109.47106 * 270.35082 * 1 2 3 31 31 H 1.08998 * 109.47569 * 30.34220 * 1 2 3 32 32 H 1.08993 * 109.47597 * 150.34963 * 1 2 3 33 33 H 1.08004 * 127.24544 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46703 * 275.65069 * 8 7 5 35 35 H 1.08999 * 109.46670 * 35.64314 * 8 7 5 36 36 H 1.08992 * 109.47245 * 155.64735 * 8 7 5 37 37 H 1.09001 * 109.47021 * 329.99032 * 9 7 5 38 38 H 1.09004 * 109.47011 * 209.99820 * 9 7 5 39 39 H 0.96702 * 114.00319 * 300.00197 * 12 10 9 40 40 H 1.08998 * 109.46953 * 305.00054 * 13 10 9 41 41 H 1.08996 * 109.47312 * 64.99941 * 13 10 9 42 42 H 1.00899 * 110.99968 * 303.95017 * 14 13 10 43 43 H 1.08998 * 109.47195 * 299.99704 * 15 14 13 44 44 H 1.08994 * 109.47401 * 59.99965 * 15 14 13 45 45 H 0.96996 * 119.99530 * 359.97438 * 18 16 15 46 46 H 0.96995 * 120.00447 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0034 5 6 4.8764 1.3812 -0.0079 6 8 4.8245 2.5912 0.0968 7 7 6.0694 0.7658 -0.1285 8 6 6.1383 -0.6971 -0.1696 9 6 7.2974 1.5596 -0.2181 10 6 7.8521 1.8015 1.1871 11 1 8.0719 0.8447 1.6606 12 8 6.8844 2.5076 1.9662 13 6 9.1343 2.6311 1.0934 14 7 9.7314 2.7621 2.4291 15 6 10.9677 3.5540 2.3777 16 6 11.5498 3.6670 3.7632 17 8 10.9897 3.1401 4.7012 18 7 12.6922 4.3545 3.9601 19 6 13.2221 4.4568 5.2204 20 1 12.7237 3.9869 6.0555 21 6 14.4001 5.1650 5.4234 22 7 14.9077 5.2636 6.6315 23 14 15.2624 5.9771 3.9790 24 1 14.7509 7.3613 3.8117 25 1 16.7247 6.0172 4.2342 26 1 14.9968 5.1986 2.7426 27 7 3.5420 -0.7297 0.0040 28 7 2.3080 -1.0871 0.0060 29 1 1.9965 -2.0057 0.0109 30 1 -0.3633 0.0063 1.0277 31 1 -0.3634 0.8869 -0.5191 32 1 -0.3634 -0.8930 -0.5083 33 1 2.0057 2.1260 -0.0004 34 1 6.1449 -1.0892 0.8474 35 1 5.2715 -1.0867 -0.7035 36 1 7.0494 -1.0036 -0.6833 37 1 7.0777 2.5164 -0.6917 38 1 8.0356 1.0211 -0.8125 39 1 6.6406 3.3701 1.6032 40 1 9.8400 2.1353 0.4269 41 1 8.8990 3.6208 0.7020 42 1 9.0733 3.1605 3.0819 43 1 11.6859 3.0642 1.7203 44 1 10.7455 4.5501 1.9951 45 1 13.1399 4.7761 3.2101 46 1 15.7299 5.7583 6.7732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571574343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:01 Heat of formation + Delta-G solvation = -61.286423 kcal Electronic energy + Delta-G solvation = -28557.954878 eV Core-core repulsion = 24290.680265 eV Total energy + Delta-G solvation = -4267.274613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.68859 -40.81674 -40.29767 -38.68543 -36.52921 -36.14679 -35.57122 -33.75577 -33.70195 -32.93152 -31.50117 -29.10929 -27.92205 -27.63619 -26.73669 -25.16796 -23.63188 -22.51923 -22.22129 -21.29914 -20.28586 -20.11141 -18.84461 -18.16181 -17.70998 -17.44741 -17.26739 -17.04740 -16.81716 -16.51610 -16.25564 -15.92538 -15.46754 -15.08496 -14.98723 -14.83077 -14.63587 -14.48587 -14.33947 -14.01147 -13.91641 -13.79676 -13.67236 -13.46863 -13.25546 -13.09818 -12.96098 -12.76068 -12.52159 -12.41589 -12.03597 -11.97587 -11.61958 -11.52139 -11.29958 -11.08193 -10.44965 -10.41910 -10.25719 -9.91658 -9.56745 -9.32995 -8.41625 -6.03122 0.51349 1.11746 1.30420 1.36084 1.45265 1.78728 1.94999 2.16097 2.23342 2.35283 2.72436 3.14591 3.30101 3.36703 3.57199 3.79580 3.92953 3.98509 4.10230 4.15704 4.21235 4.34424 4.42118 4.45080 4.51650 4.54279 4.61281 4.66344 4.74635 4.77409 4.79486 5.00771 5.05641 5.12135 5.13819 5.34550 5.51455 5.54597 5.89725 6.05052 6.11363 6.31695 6.33920 6.59482 6.81143 6.83464 6.87377 7.14683 7.38841 7.96280 8.76226 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.001655 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.907882 B =16918.554785 C =17083.448280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.034 3.966 3 C -0.210 4.210 4 C -0.036 4.036 5 C 0.597 3.403 6 O -0.563 6.563 7 N -0.597 5.597 8 C 0.073 3.927 9 C 0.090 3.910 10 C 0.096 3.904 11 H 0.091 0.909 12 O -0.572 6.572 13 C 0.036 3.964 14 N -0.687 5.687 15 C 0.063 3.937 16 C 0.446 3.554 17 O -0.617 6.617 18 N -0.589 5.589 19 C -0.332 4.332 20 H 0.052 0.948 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.229 1.229 27 N -0.262 5.262 28 N -0.370 5.370 29 H 0.461 0.539 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.378 0.622 40 H 0.105 0.895 41 H 0.048 0.952 42 H 0.343 0.657 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.391 0.609 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.824 -12.779 -26.840 40.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.238 4.238 4 C -0.195 4.195 5 C 0.384 3.616 6 O -0.440 6.440 7 N -0.328 5.328 8 C -0.069 4.069 9 C -0.034 4.034 10 C 0.036 3.964 11 H 0.109 0.891 12 O -0.379 6.379 13 C -0.094 4.094 14 N -0.319 5.319 15 C -0.070 4.070 16 C 0.234 3.766 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.461 4.461 20 H 0.070 0.930 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.153 1.153 27 N -0.099 5.099 28 N -0.087 5.087 29 H 0.309 0.691 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.176 0.824 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.227 0.773 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.094 0.906 45 H 0.226 0.774 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.015 -14.505 -25.688 39.333 hybrid contribution -0.025 2.112 -0.095 2.114 sum -26.040 -12.393 -25.783 38.684 Atomic orbital electron populations 1.20536 0.83507 1.05598 1.04629 1.21918 0.96946 0.86097 1.04318 1.21705 0.90541 1.00756 1.10802 1.21898 0.95299 0.90566 1.11723 1.17212 0.82459 0.86103 0.75815 1.90699 1.87017 1.14656 1.51671 1.47601 1.05376 1.08548 1.71259 1.22272 1.05009 0.77244 1.02421 1.22297 0.86180 0.98049 0.96837 1.22379 0.86495 0.95750 0.91793 0.89065 1.86595 1.61791 1.36055 1.53447 1.22669 0.96585 0.99873 0.90270 1.60014 1.06896 1.55469 1.09557 1.21657 0.94116 0.98649 0.92534 1.21068 0.82052 0.81348 0.92168 1.90554 1.62624 1.50945 1.46038 1.42008 1.23315 1.49378 1.08417 1.19017 1.07778 1.33495 0.85854 0.92961 1.26151 0.96842 0.97542 1.00834 1.69809 1.21917 1.42271 1.23532 0.85328 0.78112 0.79499 0.78331 1.18159 1.19903 1.15258 1.73637 1.02345 1.14000 1.19924 1.43584 1.02495 1.10626 1.52012 0.69094 0.89162 0.88758 0.88585 0.82422 0.93479 0.88461 0.88785 0.89604 0.85903 0.77311 0.87635 0.93347 0.83802 0.86278 0.90555 0.77356 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.44 71.24 0.74 0.55 16 2 C 0.03 0.37 7.23 41.40 0.30 0.67 16 3 C -0.21 -3.88 10.73 22.41 0.24 -3.64 16 4 C -0.04 -0.79 6.83 42.45 0.29 -0.50 16 5 C 0.60 15.18 7.24 86.75 0.63 15.81 16 6 O -0.56 -17.15 15.08 8.30 0.13 -17.02 16 7 N -0.60 -11.98 2.83 -850.36 -2.40 -14.38 16 8 C 0.07 1.10 9.70 127.77 1.24 2.34 16 9 C 0.09 1.51 5.18 86.38 0.45 1.96 16 10 C 0.10 2.14 3.48 30.59 0.11 2.25 16 11 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 12 O -0.57 -16.48 11.58 -136.75 -1.58 -18.07 16 13 C 0.04 0.74 5.36 86.31 0.46 1.21 16 14 N -0.69 -21.74 6.13 -517.93 -3.17 -24.92 16 15 C 0.06 1.98 6.17 85.56 0.53 2.51 16 16 C 0.45 21.06 7.82 87.66 0.69 21.74 16 17 O -0.62 -36.24 15.78 -3.06 -0.05 -36.28 16 18 N -0.59 -28.65 5.09 -306.99 -1.56 -30.21 16 19 C -0.33 -20.06 10.16 84.04 0.85 -19.21 16 20 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 21 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 22 N -0.93 -57.43 13.96 21.66 0.30 -57.13 16 23 Si 0.97 39.32 27.74 68.60 1.90 41.23 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 27 N -0.26 -4.46 8.74 -48.18 -0.42 -4.88 16 28 N -0.37 -3.73 6.83 -47.93 -0.33 -4.06 16 29 H 0.46 0.85 8.96 -219.99 -1.97 -1.12 16 30 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.44 5.30 -2.39 -0.01 1.43 16 36 H 0.09 0.91 7.83 -2.39 -0.02 0.89 16 37 H 0.09 1.51 7.48 -2.39 -0.02 1.50 16 38 H 0.12 1.23 7.86 -2.38 -0.02 1.21 16 39 H 0.38 9.78 8.34 -74.06 -0.62 9.17 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.34 12.59 7.99 -89.69 -0.72 11.87 16 43 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 46 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -91.99 386.84 -3.04 -95.02 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -2.84 Total: 45.41 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 6.99 Total: 25.29 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -7.59 Total: -135.57 kcal Atomic # 8 Polarization: -69.87 SS G_CDS: -1.51 Total: -71.38 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.23 kcal Total: -91.99 -3.04 -95.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571574343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.738 kcal (2) G-P(sol) polarization free energy of solvation -91.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds