Wall clock time and date at job start Tue Mar 31 2020 23:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35366 * 127.24372 * 2 1 4 4 N 1.35036 * 107.22635 * 179.87880 * 3 2 1 5 5 H 0.97007 * 124.88679 * 180.15151 * 4 3 2 6 6 N 1.28467 * 110.22998 * 0.40085 * 4 3 2 7 7 C 1.31807 * 110.07615 * 359.74891 * 6 4 3 8 8 C 1.47710 * 126.52087 * 179.97438 * 7 6 4 9 9 O 1.21565 * 120.00058 * 174.98322 * 8 7 6 10 10 N 1.34778 * 119.99865 * 354.97695 * 8 7 6 11 11 C 1.46500 * 120.00066 * 2.72043 * 10 8 7 12 12 C 1.46492 * 119.99943 * 182.71370 * 10 8 7 13 13 C 1.53004 * 109.47105 * 90.00363 * 12 10 8 14 14 H 1.09001 * 109.47084 * 305.00195 * 13 12 10 15 15 O 1.42906 * 109.46696 * 65.00062 * 13 12 10 16 16 C 1.53002 * 109.47193 * 184.99797 * 13 12 10 17 17 N 1.46903 * 109.46993 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99951 * 180.02562 * 17 16 13 19 19 C 1.50695 * 109.47011 * 179.97438 * 18 17 16 20 20 O 1.21297 * 120.00108 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00150 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00598 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00114 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99597 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47010 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47175 * 120.00364 * 26 24 22 29 29 H 1.48503 * 109.47267 * 240.00540 * 26 24 22 30 30 H 1.08996 * 109.47247 * 269.68338 * 1 2 3 31 31 H 1.09005 * 109.46702 * 149.68488 * 1 2 3 32 32 H 1.08999 * 109.46944 * 29.68858 * 1 2 3 33 33 H 1.08000 * 126.38996 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47040 * 83.89882 * 11 10 8 35 35 H 1.08996 * 109.47254 * 203.90072 * 11 10 8 36 36 H 1.08996 * 109.46900 * 323.90593 * 11 10 8 37 37 H 1.08999 * 109.47320 * 210.00570 * 12 10 8 38 38 H 1.08996 * 109.47379 * 330.00597 * 12 10 8 39 39 H 0.96697 * 113.99897 * 60.00374 * 15 13 12 40 40 H 1.09001 * 109.47430 * 300.00186 * 16 13 12 41 41 H 1.09006 * 109.46954 * 60.00332 * 16 13 12 42 42 H 1.00903 * 111.00009 * 303.95451 * 17 16 13 43 43 H 1.08997 * 109.47019 * 299.99888 * 18 17 16 44 44 H 1.09007 * 109.46845 * 60.00050 * 18 17 16 45 45 H 0.97005 * 119.99928 * 359.97438 * 21 19 18 46 46 H 0.97007 * 120.00007 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 0.0027 5 1 4.3887 1.1731 0.0055 6 7 3.5998 -0.6693 -0.0041 7 6 2.3635 -1.1263 -0.0061 8 6 1.9507 -2.5445 -0.0140 9 8 0.7739 -2.8355 0.0770 10 7 2.8787 -3.5159 -0.1221 11 6 4.3009 -3.1681 -0.1718 12 6 2.4652 -4.9197 -0.1898 13 6 2.2487 -5.3176 -1.6513 14 1 1.5378 -4.6324 -2.1130 15 8 3.4932 -5.2559 -2.3510 16 6 1.6978 -6.7436 -1.7153 17 7 1.4906 -7.1259 -3.1185 18 6 0.9604 -8.4922 -3.2191 19 6 0.7606 -8.8479 -4.6697 20 8 1.0336 -8.0427 -5.5348 21 7 0.2787 -10.0609 -5.0060 22 6 0.0975 -10.3847 -6.3258 23 1 0.3413 -9.6681 -7.0961 24 6 -0.3989 -11.6354 -6.6725 25 7 -0.6950 -12.5076 -5.7352 26 14 -0.6465 -12.0764 -8.4707 27 1 -0.2412 -10.9291 -9.3221 28 1 0.1833 -13.2606 -8.8087 29 1 -2.0780 -12.3902 -8.7109 30 1 -0.3633 -0.0057 1.0276 31 1 -0.3633 -0.8872 -0.5188 32 1 -0.3633 0.8928 -0.5090 33 1 2.0219 2.1138 0.0004 34 1 4.6793 -3.0403 0.8424 35 1 4.8531 -3.9663 -0.6678 36 1 4.4284 -2.2387 -0.7269 37 1 3.2410 -5.5485 0.2469 38 1 1.5358 -5.0518 0.3641 39 1 4.1747 -5.8415 -1.9938 40 1 2.4087 -7.4289 -1.2536 41 1 0.7486 -6.7907 -1.1815 42 1 0.8855 -6.4682 -3.5869 43 1 1.6656 -9.1897 -2.7673 44 1 0.0057 -8.5508 -2.6962 45 1 0.0608 -10.7050 -4.3142 46 1 -1.0419 -13.3806 -5.9771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571578488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:07 Heat of formation + Delta-G solvation = -31.378042 kcal Electronic energy + Delta-G solvation = -28725.683779 eV Core-core repulsion = 24459.706091 eV Total energy + Delta-G solvation = -4265.977689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.06423 -39.93075 -38.34870 -37.63328 -35.51806 -34.64117 -33.72203 -33.37624 -31.95417 -31.18336 -30.33429 -27.63844 -27.53254 -26.59964 -25.26850 -23.88131 -22.80474 -21.74934 -20.99810 -19.47653 -19.18727 -18.42329 -17.84674 -17.28379 -16.85692 -16.45057 -16.10406 -15.76699 -15.71534 -15.19005 -14.77728 -14.45525 -14.31967 -14.13018 -13.72804 -13.64100 -13.57003 -13.24536 -13.23840 -13.04359 -12.94537 -12.78135 -12.41034 -12.20700 -11.87892 -11.73900 -11.48786 -11.44093 -11.09754 -11.01722 -10.92346 -10.37711 -10.30585 -10.18387 -10.08920 -9.78193 -9.47397 -9.22919 -8.72418 -8.37706 -7.97737 -7.90309 -6.37414 -3.77855 1.23748 1.73160 2.40270 2.79233 3.14408 3.19829 3.29970 3.37859 3.96304 4.01075 4.09523 4.28074 4.38436 4.49242 4.66243 4.83023 4.93498 4.98979 5.04335 5.10871 5.17231 5.20322 5.29006 5.34339 5.42507 5.52105 5.53903 5.60573 5.64333 5.77020 5.84681 5.85070 5.99880 6.02452 6.19017 6.28104 6.32060 6.58425 7.09076 7.25602 7.44300 7.59882 7.65573 7.79474 7.95662 8.11599 8.66571 9.22890 9.59487 10.11476 10.80545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.001731 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.132671 B =16175.300872 C =16456.254283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.145 4.145 3 C -0.019 4.019 4 N -0.385 5.385 5 H 0.446 0.554 6 N -0.254 5.254 7 C -0.009 4.009 8 C 0.600 3.400 9 O -0.530 6.530 10 N -0.595 5.595 11 C 0.079 3.921 12 C 0.085 3.915 13 C 0.097 3.903 14 H 0.099 0.901 15 O -0.540 6.540 16 C 0.029 3.971 17 N -0.658 5.658 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.580 6.580 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.184 0.816 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.368 0.632 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.350 0.650 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.143 24.768 19.047 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.155 4.155 3 C -0.164 4.164 4 N -0.099 5.099 5 H 0.291 0.709 6 N -0.091 5.091 7 C -0.169 4.169 8 C 0.386 3.614 9 O -0.405 6.405 10 N -0.327 5.327 11 C -0.064 4.064 12 C -0.039 4.039 13 C 0.036 3.964 14 H 0.117 0.883 15 O -0.344 6.344 16 C -0.102 4.102 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.464 6.464 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.201 0.799 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.215 0.785 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.170 0.830 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.020 24.822 18.031 32.274 hybrid contribution -1.137 -0.431 0.282 1.248 sum 8.883 24.391 18.313 31.768 Atomic orbital electron populations 1.20184 0.87929 1.03190 1.02477 1.20419 0.97712 0.90392 1.06966 1.22719 0.84157 1.00595 1.08889 1.43375 1.08605 1.04714 1.53177 0.70949 1.73721 1.22756 0.93437 1.19173 1.21832 0.89525 0.95017 1.10562 1.16976 0.85122 0.82733 0.76550 1.90784 1.16852 1.82405 1.50444 1.47508 1.07477 1.05857 1.71831 1.22115 0.79501 1.03067 1.01699 1.22243 1.02601 0.81100 0.97917 1.22301 0.87181 0.95889 0.90986 0.88270 1.86679 1.22004 1.66793 1.58932 1.22600 1.00164 0.96353 0.91038 1.59985 1.54595 1.02867 1.11628 1.21689 0.98455 0.91457 0.96643 1.19821 0.84024 0.83808 0.89639 1.90537 1.55294 1.49963 1.50626 1.41869 1.56764 1.12956 1.08668 1.19762 1.39880 0.99405 0.83649 0.87877 1.25262 0.97261 0.95626 0.99917 1.69625 1.44755 1.07210 1.32858 0.85797 0.77794 0.78539 0.82191 1.19220 1.20780 1.20804 0.91347 0.89922 0.91871 0.79906 0.93054 0.90853 0.88810 0.89754 0.88670 0.78540 0.90736 0.94462 0.82998 0.89690 0.93960 0.77489 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.89 36.01 0.36 -0.33 16 2 C -0.14 -1.35 6.25 -104.40 -0.65 -2.00 16 3 C -0.02 -0.11 11.97 -17.17 -0.21 -0.32 16 4 N -0.39 -2.13 6.83 30.47 0.21 -1.92 16 5 H 0.45 0.69 8.96 -190.43 -1.71 -1.02 16 6 N -0.25 -2.25 8.75 33.42 0.29 -1.96 16 7 C -0.01 -0.10 6.83 -82.77 -0.57 -0.66 16 8 C 0.60 7.61 7.68 -12.39 -0.10 7.52 16 9 O -0.53 -7.95 14.74 5.31 0.08 -7.87 16 10 N -0.59 -6.31 2.84 -182.75 -0.52 -6.83 16 11 C 0.08 0.67 9.37 59.85 0.56 1.23 16 12 C 0.08 0.82 5.06 -4.04 -0.02 0.80 16 13 C 0.10 1.15 3.42 -26.73 -0.09 1.06 16 14 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 15 O -0.54 -6.80 12.15 -35.23 -0.43 -7.23 16 16 C 0.03 0.36 5.35 -3.82 -0.02 0.34 16 17 N -0.66 -11.27 5.99 -115.05 -0.69 -11.96 16 18 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 19 C 0.44 10.84 7.82 -10.99 -0.09 10.76 16 20 O -0.58 -16.48 15.78 5.54 0.09 -16.39 16 21 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 22 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 23 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 26 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.90 6.83 -51.93 -0.35 0.54 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.18 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.53 7.24 -51.93 -0.38 0.16 16 36 H 0.09 0.86 5.38 -51.93 -0.28 0.58 16 37 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.10 0.98 7.38 -51.93 -0.38 0.60 16 39 H 0.37 3.32 9.04 45.56 0.41 3.73 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.35 6.47 8.43 -39.29 -0.33 6.14 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -37.57 389.16 -7.63 -45.20 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -7.08 Total: 14.64 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.09 Total: 11.09 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.04 Total: -61.77 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.26 Total: -31.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.57 -7.63 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571578488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.824 kcal (2) G-P(sol) polarization free energy of solvation -37.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds