Wall clock time and date at job start Tue Mar 31 2020 23:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35366 * 127.24372 * 2 1 4 4 N 1.35036 * 107.22635 * 179.87880 * 3 2 1 5 5 H 0.97007 * 124.88679 * 180.15151 * 4 3 2 6 6 N 1.28467 * 110.22998 * 0.40085 * 4 3 2 7 7 C 1.31807 * 110.07615 * 359.74891 * 6 4 3 8 8 C 1.47710 * 126.52087 * 179.97438 * 7 6 4 9 9 O 1.21565 * 120.00058 * 174.98322 * 8 7 6 10 10 N 1.34778 * 119.99865 * 354.97695 * 8 7 6 11 11 C 1.46500 * 120.00066 * 2.72043 * 10 8 7 12 12 C 1.46492 * 119.99943 * 182.71370 * 10 8 7 13 13 C 1.53004 * 109.47105 * 90.00363 * 12 10 8 14 14 H 1.09001 * 109.47084 * 305.00195 * 13 12 10 15 15 O 1.42906 * 109.46696 * 65.00062 * 13 12 10 16 16 C 1.53002 * 109.47193 * 184.99797 * 13 12 10 17 17 N 1.46903 * 109.46993 * 180.02562 * 16 13 12 18 18 C 1.46898 * 110.99951 * 180.02562 * 17 16 13 19 19 C 1.50695 * 109.47011 * 179.97438 * 18 17 16 20 20 O 1.21297 * 120.00108 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00150 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00598 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00114 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99597 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47010 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47175 * 120.00364 * 26 24 22 29 29 H 1.48503 * 109.47267 * 240.00540 * 26 24 22 30 30 H 1.08996 * 109.47247 * 269.68338 * 1 2 3 31 31 H 1.09005 * 109.46702 * 149.68488 * 1 2 3 32 32 H 1.08999 * 109.46944 * 29.68858 * 1 2 3 33 33 H 1.08000 * 126.38996 * 0.02562 * 3 2 1 34 34 H 1.09003 * 109.47040 * 83.89882 * 11 10 8 35 35 H 1.08996 * 109.47254 * 203.90072 * 11 10 8 36 36 H 1.08996 * 109.46900 * 323.90593 * 11 10 8 37 37 H 1.08999 * 109.47320 * 210.00570 * 12 10 8 38 38 H 1.08996 * 109.47379 * 330.00597 * 12 10 8 39 39 H 0.96697 * 113.99897 * 60.00374 * 15 13 12 40 40 H 1.09001 * 109.47430 * 300.00186 * 16 13 12 41 41 H 1.09006 * 109.46954 * 60.00332 * 16 13 12 42 42 H 1.00903 * 111.00009 * 303.95451 * 17 16 13 43 43 H 1.08997 * 109.47019 * 299.99888 * 18 17 16 44 44 H 1.09007 * 109.46845 * 60.00050 * 18 17 16 45 45 H 0.97005 * 119.99928 * 359.97438 * 21 19 18 46 46 H 0.97007 * 120.00007 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 0.0027 5 1 4.3887 1.1731 0.0055 6 7 3.5998 -0.6693 -0.0041 7 6 2.3635 -1.1263 -0.0061 8 6 1.9507 -2.5445 -0.0140 9 8 0.7739 -2.8355 0.0770 10 7 2.8787 -3.5159 -0.1221 11 6 4.3009 -3.1681 -0.1718 12 6 2.4652 -4.9197 -0.1898 13 6 2.2487 -5.3176 -1.6513 14 1 1.5378 -4.6324 -2.1130 15 8 3.4932 -5.2559 -2.3510 16 6 1.6978 -6.7436 -1.7153 17 7 1.4906 -7.1259 -3.1185 18 6 0.9604 -8.4922 -3.2191 19 6 0.7606 -8.8479 -4.6697 20 8 1.0336 -8.0427 -5.5348 21 7 0.2787 -10.0609 -5.0060 22 6 0.0975 -10.3847 -6.3258 23 1 0.3413 -9.6681 -7.0961 24 6 -0.3989 -11.6354 -6.6725 25 7 -0.6950 -12.5076 -5.7352 26 14 -0.6465 -12.0764 -8.4707 27 1 -0.2412 -10.9291 -9.3221 28 1 0.1833 -13.2606 -8.8087 29 1 -2.0780 -12.3902 -8.7109 30 1 -0.3633 -0.0057 1.0276 31 1 -0.3633 -0.8872 -0.5188 32 1 -0.3633 0.8928 -0.5090 33 1 2.0219 2.1138 0.0004 34 1 4.6793 -3.0403 0.8424 35 1 4.8531 -3.9663 -0.6678 36 1 4.4284 -2.2387 -0.7269 37 1 3.2410 -5.5485 0.2469 38 1 1.5358 -5.0518 0.3641 39 1 4.1747 -5.8415 -1.9938 40 1 2.4087 -7.4289 -1.2536 41 1 0.7486 -6.7907 -1.1815 42 1 0.8855 -6.4682 -3.5869 43 1 1.6656 -9.1897 -2.7673 44 1 0.0057 -8.5508 -2.6962 45 1 0.0608 -10.7050 -4.3142 46 1 -1.0419 -13.3806 -5.9771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571578488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:06 Heat of formation + Delta-G solvation = -64.444618 kcal Electronic energy + Delta-G solvation = -28727.117654 eV Core-core repulsion = 24459.706091 eV Total energy + Delta-G solvation = -4267.411563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.64896 -40.80866 -40.16231 -38.76773 -36.56064 -36.06756 -35.53796 -33.99630 -33.27938 -32.64014 -31.30721 -28.90495 -28.17081 -27.45949 -26.77687 -25.24624 -23.76313 -22.71693 -21.60301 -21.08388 -20.23034 -19.91945 -18.97363 -18.24399 -17.91517 -17.39288 -17.16949 -17.15218 -16.59038 -16.54356 -16.13078 -16.05454 -15.73058 -15.13443 -15.05449 -14.75599 -14.46694 -14.29586 -14.20196 -13.97906 -13.83024 -13.67015 -13.50723 -13.44306 -13.20250 -13.02458 -12.88665 -12.70623 -12.52804 -12.41530 -12.12007 -12.04460 -11.62912 -11.52497 -11.31529 -10.98241 -10.40670 -10.36156 -10.02343 -9.84243 -9.52015 -9.30780 -8.47567 -5.96367 0.50855 1.17333 1.36149 1.41191 1.55838 1.80147 2.04150 2.20165 2.29339 2.31893 2.88910 3.19395 3.34708 3.43187 3.64579 3.79767 3.90618 4.02584 4.13008 4.16399 4.32354 4.41504 4.43944 4.49209 4.52036 4.55024 4.57854 4.66906 4.73836 4.82470 4.89146 4.97177 5.02234 5.15107 5.19472 5.40341 5.50494 5.54396 5.87158 6.09233 6.14735 6.30064 6.32114 6.59585 6.84210 6.97641 7.11408 7.11973 7.55123 8.11172 8.70063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.001731 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.132671 B =16175.300872 C =16456.254283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.367 5.367 5 H 0.465 0.535 6 N -0.260 5.260 7 C -0.044 4.044 8 C 0.587 3.413 9 O -0.568 6.568 10 N -0.595 5.595 11 C 0.080 3.920 12 C 0.090 3.910 13 C 0.109 3.891 14 H 0.065 0.935 15 O -0.559 6.559 16 C 0.033 3.967 17 N -0.675 5.675 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.275 1.275 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.385 0.615 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.338 0.662 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 25.441 20.179 34.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.191 4.191 3 C -0.137 4.137 4 N -0.083 5.083 5 H 0.313 0.687 6 N -0.098 5.098 7 C -0.203 4.203 8 C 0.375 3.625 9 O -0.446 6.446 10 N -0.325 5.325 11 C -0.062 4.062 12 C -0.033 4.033 13 C 0.048 3.952 14 H 0.083 0.917 15 O -0.365 6.365 16 C -0.096 4.096 17 N -0.306 5.306 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.200 1.200 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.234 0.766 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.155 0.845 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.350 25.470 19.212 33.862 hybrid contribution -1.458 -0.546 -0.047 1.558 sum 9.892 24.925 19.164 32.960 Atomic orbital electron populations 1.20099 0.88135 1.02708 1.02308 1.20705 0.98205 0.91174 1.09024 1.23260 0.83251 1.01570 1.05648 1.43526 1.09665 1.04020 1.51109 0.68655 1.73648 1.21779 0.94929 1.19437 1.21801 0.90841 0.94695 1.12969 1.17409 0.84983 0.83959 0.76166 1.90744 1.18319 1.83177 1.52380 1.47647 1.08116 1.05895 1.70867 1.22199 0.78286 1.03217 1.02484 1.22231 1.03567 0.81316 0.96218 1.22079 0.86397 0.94824 0.91949 0.91718 1.86643 1.22607 1.67584 1.59697 1.22693 1.01378 0.97068 0.88491 1.60018 1.54170 1.01933 1.14517 1.21563 1.00420 0.92698 0.92014 1.20934 0.82049 0.82592 0.92086 1.90503 1.56762 1.51055 1.52846 1.41927 1.57257 1.13767 1.08043 1.19703 1.42303 0.99959 0.84493 0.90514 1.26055 0.96150 0.94916 1.04175 1.69678 1.44286 1.07544 1.34528 0.84857 0.78327 0.78122 0.76920 1.19964 1.19417 1.19499 0.91375 0.93187 0.89492 0.75556 0.91843 0.89492 0.89600 0.86232 0.89481 0.76618 0.88059 0.93471 0.84468 0.87203 0.91752 0.76887 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 9.89 71.24 0.70 -0.62 16 2 C -0.18 -3.29 6.25 -19.72 -0.12 -3.42 16 3 C 0.01 0.07 11.97 83.54 1.00 1.07 16 4 N -0.37 -3.22 6.83 -57.51 -0.39 -3.61 16 5 H 0.46 0.06 8.96 -219.98 -1.97 -1.91 16 6 N -0.26 -4.35 8.75 -48.18 -0.42 -4.77 16 7 C -0.04 -0.99 6.83 42.46 0.29 -0.70 16 8 C 0.59 15.61 7.68 86.75 0.67 16.27 16 9 O -0.57 -18.35 14.74 -3.92 -0.06 -18.41 16 10 N -0.59 -12.55 2.84 -850.38 -2.41 -14.96 16 11 C 0.08 1.26 9.37 127.77 1.20 2.46 16 12 C 0.09 1.66 5.06 86.38 0.44 2.10 16 13 C 0.11 2.54 3.42 30.60 0.10 2.65 16 14 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 15 O -0.56 -13.64 12.15 -148.98 -1.81 -15.45 16 16 C 0.03 0.78 5.35 86.30 0.46 1.24 16 17 N -0.67 -22.82 5.99 -517.92 -3.10 -25.92 16 18 C 0.07 2.33 6.17 85.56 0.53 2.86 16 19 C 0.44 21.71 7.82 87.65 0.69 22.40 16 20 O -0.63 -36.67 15.78 -3.08 -0.05 -36.72 16 21 N -0.57 -30.35 5.29 -306.98 -1.62 -31.97 16 22 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 25 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 26 Si 0.99 43.94 29.55 68.60 2.03 45.96 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.20 6.83 -2.38 -0.02 1.18 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.10 7.24 -2.39 -0.02 1.09 16 36 H 0.09 1.53 5.38 -2.39 -0.01 1.51 16 37 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16 38 H 0.09 1.79 7.38 -2.39 -0.02 1.77 16 39 H 0.38 6.19 9.04 -74.06 -0.67 5.52 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.34 12.82 8.43 -89.69 -0.76 12.06 16 43 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.40 19.81 7.90 -92.70 -0.73 19.08 16 46 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -85.39 389.16 -3.39 -88.78 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -3.06 Total: 39.94 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 7.23 Total: 27.24 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -7.67 Total: -131.35 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -1.92 Total: -70.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -85.39 -3.39 -88.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571578488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.339 kcal (2) G-P(sol) polarization free energy of solvation -85.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds