Wall clock time and date at job start Tue Mar 31 2020 23:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35358 * 127.24854 * 2 1 4 4 N 1.35030 * 107.23299 * 179.84994 * 3 2 1 5 5 H 0.97005 * 124.89209 * 180.14552 * 4 3 2 6 6 N 1.28473 * 110.22834 * 0.43572 * 4 3 2 7 7 C 1.31809 * 110.07077 * 359.72864 * 6 4 3 8 8 C 1.47707 * 126.51779 * 179.97438 * 7 6 4 9 9 O 1.21572 * 120.00245 * 174.98221 * 8 7 6 10 10 N 1.34776 * 119.99949 * 354.98599 * 8 7 6 11 11 C 1.46500 * 120.00004 * 2.77593 * 10 8 7 12 12 C 1.46508 * 120.00286 * 182.77185 * 10 8 7 13 13 C 1.52999 * 109.46687 * 89.99895 * 12 10 8 14 14 H 1.08993 * 109.47144 * 60.00846 * 13 12 10 15 15 O 1.42898 * 109.47435 * 300.00293 * 13 12 10 16 16 C 1.53005 * 109.46563 * 180.02562 * 13 12 10 17 17 N 1.46906 * 109.46880 * 185.00176 * 16 13 12 18 18 C 1.46893 * 110.99821 * 180.02562 * 17 16 13 19 19 C 1.50707 * 109.46950 * 180.02562 * 18 17 16 20 20 O 1.21281 * 119.99887 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99712 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99490 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00424 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99833 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99713 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46859 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46967 * 120.00191 * 26 24 22 29 29 H 1.48495 * 109.47153 * 240.00675 * 26 24 22 30 30 H 1.09009 * 109.46782 * 269.68083 * 1 2 3 31 31 H 1.08996 * 109.46840 * 149.68677 * 1 2 3 32 32 H 1.08991 * 109.47518 * 29.67927 * 1 2 3 33 33 H 1.08006 * 126.38094 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.46997 * 83.91260 * 11 10 8 35 35 H 1.09007 * 109.46962 * 203.90441 * 11 10 8 36 36 H 1.08994 * 109.47187 * 323.90582 * 11 10 8 37 37 H 1.08994 * 109.47525 * 210.00306 * 12 10 8 38 38 H 1.09005 * 109.46873 * 330.00152 * 12 10 8 39 39 H 0.96704 * 113.99605 * 300.00172 * 15 13 12 40 40 H 1.08994 * 109.47289 * 305.00032 * 16 13 12 41 41 H 1.08997 * 109.47170 * 65.00517 * 16 13 12 42 42 H 1.00895 * 111.00062 * 56.04569 * 17 16 13 43 43 H 1.09002 * 109.47043 * 299.99770 * 18 17 16 44 44 H 1.08999 * 109.47907 * 59.99672 * 18 17 16 45 45 H 0.96996 * 120.00076 * 0.02562 * 21 19 18 46 46 H 0.97003 * 119.99666 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 0.0034 5 1 4.3888 1.1730 0.0062 6 7 3.5999 -0.6694 -0.0037 7 6 2.3635 -1.1264 -0.0062 8 6 1.9506 -2.5445 -0.0146 9 8 0.7737 -2.8355 0.0760 10 7 2.8786 -3.5159 -0.1226 11 6 4.3009 -3.1682 -0.1704 12 6 2.4650 -4.9197 -0.1921 13 6 2.2501 -5.3162 -1.6541 14 1 3.1801 -5.1837 -2.2069 15 8 1.2337 -4.4912 -2.2269 16 6 1.8176 -6.7820 -1.7266 17 7 1.7272 -7.1969 -3.1329 18 6 1.3128 -8.6020 -3.2417 19 6 1.2319 -8.9907 -4.6955 20 8 1.4932 -8.1772 -5.5562 21 7 0.8692 -10.2425 -5.0391 22 6 0.7951 -10.5960 -6.3616 23 1 1.0277 -9.8716 -7.1281 24 6 0.4216 -11.8866 -6.7159 25 7 0.1390 -12.7682 -5.7832 26 14 0.3213 -12.3685 -8.5179 27 1 0.6864 -11.2033 -9.3629 28 1 1.2616 -13.4866 -8.7843 29 1 -1.0632 -12.7988 -8.8389 30 1 -0.3633 -0.0057 1.0278 31 1 -0.3633 -0.8871 -0.5187 32 1 -0.3634 0.8927 -0.5088 33 1 2.0219 2.1138 0.0004 34 1 4.6783 -3.0415 0.8444 35 1 4.8535 -3.9661 -0.6666 36 1 4.4292 -2.2384 -0.7245 37 1 3.2403 -5.5490 0.2449 38 1 1.5350 -5.0522 0.3609 39 1 0.3766 -4.5584 -1.7841 40 1 2.5502 -7.4029 -1.2110 41 1 0.8440 -6.8975 -1.2504 42 1 2.6002 -7.0388 -3.6134 43 1 2.0417 -9.2358 -2.7365 44 1 0.3356 -8.7298 -2.7761 45 1 0.6599 -10.8930 -4.3507 46 1 -0.1220 -13.6691 -6.0306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571578489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:10 Heat of formation + Delta-G solvation = -31.041391 kcal Electronic energy + Delta-G solvation = -28807.190444 eV Core-core repulsion = 24541.227354 eV Total energy + Delta-G solvation = -4265.963090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03547 -39.89222 -38.32226 -37.46949 -35.54227 -34.63670 -33.72081 -33.33681 -31.90397 -31.18561 -30.23921 -27.67212 -27.50755 -26.63457 -25.24864 -23.88816 -22.77101 -21.64575 -20.98093 -19.46068 -19.18687 -18.39727 -17.84969 -17.21725 -16.95051 -16.41513 -16.00772 -15.76270 -15.65349 -15.05705 -14.80105 -14.39651 -14.33869 -14.13591 -13.67978 -13.62836 -13.54320 -13.30386 -13.22244 -13.01885 -12.94342 -12.74490 -12.39402 -12.14984 -11.86706 -11.74286 -11.48726 -11.44270 -11.08431 -11.01753 -10.90232 -10.30905 -10.23636 -10.18464 -10.02230 -9.75088 -9.47783 -9.19664 -8.71106 -8.37834 -7.97472 -7.90493 -6.37728 -3.78202 1.27745 1.76980 2.42487 2.80840 3.19587 3.22497 3.29762 3.37614 3.95955 4.03409 4.11681 4.30178 4.41464 4.53217 4.72829 4.86207 4.95873 4.97853 5.01606 5.12357 5.19398 5.20558 5.27688 5.33934 5.35694 5.50812 5.57351 5.59702 5.62619 5.74296 5.84001 5.88039 6.02479 6.04705 6.21789 6.27637 6.31973 6.60559 7.13028 7.25832 7.46977 7.59568 7.69686 7.92441 8.03273 8.11259 8.66228 9.22545 9.59128 10.11081 10.80228 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.001708 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.845648 B =16387.822571 C =16570.287964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.144 4.144 3 C -0.020 4.020 4 N -0.386 5.386 5 H 0.446 0.554 6 N -0.258 5.258 7 C -0.007 4.007 8 C 0.609 3.391 9 O -0.526 6.526 10 N -0.598 5.598 11 C 0.075 3.925 12 C 0.083 3.917 13 C 0.098 3.902 14 H 0.095 0.905 15 O -0.538 6.538 16 C 0.030 3.970 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.442 3.558 20 O -0.581 6.581 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.183 0.817 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.376 0.624 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.349 0.651 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 25.041 19.184 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.154 4.154 3 C -0.164 4.164 4 N -0.100 5.100 5 H 0.290 0.710 6 N -0.095 5.095 7 C -0.167 4.167 8 C 0.396 3.604 9 O -0.401 6.401 10 N -0.331 5.331 11 C -0.068 4.068 12 C -0.040 4.040 13 C 0.036 3.964 14 H 0.113 0.887 15 O -0.343 6.343 16 C -0.101 4.101 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.464 6.464 21 N -0.203 5.203 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.200 0.800 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.223 0.777 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.440 25.257 18.139 32.221 hybrid contribution 0.074 -0.837 0.276 0.885 sum 8.515 24.420 18.415 31.748 Atomic orbital electron populations 1.20184 0.87905 1.03278 1.02395 1.20416 0.97733 0.90370 1.06844 1.22715 0.84169 1.00600 1.08964 1.43354 1.08580 1.04702 1.53315 0.71014 1.73693 1.22854 0.93466 1.19469 1.21868 0.89454 0.95145 1.10235 1.16816 0.85046 0.82476 0.76102 1.90737 1.16804 1.82300 1.50223 1.47462 1.07181 1.05978 1.72430 1.22120 0.79795 1.02753 1.02147 1.22274 1.02543 0.81135 0.98095 1.22235 0.92758 0.89021 0.92355 0.88734 1.86604 1.22249 1.66016 1.59440 1.22628 1.01165 0.95432 0.90873 1.59931 1.38713 1.19505 1.10930 1.21689 1.01075 0.88775 0.96655 1.19822 0.84436 0.83416 0.89620 1.90532 1.54352 1.50509 1.51034 1.41869 1.59843 1.09963 1.08581 1.19764 1.42921 0.96511 0.83517 0.87877 1.25261 0.97251 0.95601 0.99941 1.69624 1.46745 1.05107 1.32965 0.85796 0.77757 0.78566 0.82204 1.19221 1.20825 1.20755 0.91432 0.89738 0.91944 0.79953 0.92723 0.91407 0.88705 0.89537 0.89076 0.77670 0.94831 0.90548 0.83176 0.94045 0.89628 0.77489 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.89 36.01 0.36 -0.33 16 2 C -0.14 -1.35 6.25 -104.41 -0.65 -2.00 16 3 C -0.02 -0.12 11.97 -17.17 -0.21 -0.33 16 4 N -0.39 -2.17 6.83 30.47 0.21 -1.96 16 5 H 0.45 0.72 8.96 -190.43 -1.71 -0.99 16 6 N -0.26 -2.29 8.75 33.42 0.29 -2.00 16 7 C -0.01 -0.07 6.83 -82.77 -0.57 -0.64 16 8 C 0.61 7.63 7.15 -12.39 -0.09 7.54 16 9 O -0.53 -7.57 13.72 0.39 0.01 -7.56 16 10 N -0.60 -6.30 2.83 -182.74 -0.52 -6.81 16 11 C 0.08 0.62 9.61 59.85 0.58 1.19 16 12 C 0.08 0.80 5.13 -4.04 -0.02 0.78 16 13 C 0.10 1.15 3.42 -26.73 -0.09 1.06 16 14 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 15 O -0.54 -8.00 12.15 -40.15 -0.49 -8.49 16 16 C 0.03 0.37 5.32 -3.82 -0.02 0.35 16 17 N -0.66 -11.23 6.07 -115.05 -0.70 -11.93 16 18 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 19 C 0.44 10.82 7.82 -10.98 -0.09 10.74 16 20 O -0.58 -16.45 15.78 5.56 0.09 -16.36 16 21 N -0.57 -14.74 5.29 -10.96 -0.06 -14.79 16 22 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 23 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 26 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.92 6.83 -51.93 -0.35 0.57 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.46 8.03 -51.93 -0.42 0.05 16 36 H 0.09 0.84 5.37 -51.93 -0.28 0.57 16 37 H 0.09 0.62 8.07 -51.93 -0.42 0.21 16 38 H 0.09 0.92 7.38 -51.93 -0.38 0.53 16 39 H 0.38 5.08 8.54 45.56 0.39 5.46 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.35 6.18 8.43 -39.29 -0.33 5.85 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -37.21 388.23 -7.83 -45.03 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -7.14 Total: 15.76 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.07 Total: 11.07 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.05 Total: -61.75 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.39 Total: -32.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.21 -7.83 -45.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571578489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.991 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds