Wall clock time and date at job start Tue Mar 31 2020 23:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35358 * 127.24854 * 2 1 4 4 N 1.35030 * 107.23299 * 179.84994 * 3 2 1 5 5 H 0.97005 * 124.89209 * 180.14552 * 4 3 2 6 6 N 1.28473 * 110.22834 * 0.43572 * 4 3 2 7 7 C 1.31809 * 110.07077 * 359.72864 * 6 4 3 8 8 C 1.47707 * 126.51779 * 179.97438 * 7 6 4 9 9 O 1.21572 * 120.00245 * 174.98221 * 8 7 6 10 10 N 1.34776 * 119.99949 * 354.98599 * 8 7 6 11 11 C 1.46500 * 120.00004 * 2.77593 * 10 8 7 12 12 C 1.46508 * 120.00286 * 182.77185 * 10 8 7 13 13 C 1.52999 * 109.46687 * 89.99895 * 12 10 8 14 14 H 1.08993 * 109.47144 * 60.00846 * 13 12 10 15 15 O 1.42898 * 109.47435 * 300.00293 * 13 12 10 16 16 C 1.53005 * 109.46563 * 180.02562 * 13 12 10 17 17 N 1.46906 * 109.46880 * 185.00176 * 16 13 12 18 18 C 1.46893 * 110.99821 * 180.02562 * 17 16 13 19 19 C 1.50707 * 109.46950 * 180.02562 * 18 17 16 20 20 O 1.21281 * 119.99887 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99712 * 179.97438 * 19 18 17 22 22 C 1.37094 * 119.99490 * 179.97438 * 21 19 18 23 23 H 1.08004 * 120.00424 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99833 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99713 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46859 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46967 * 120.00191 * 26 24 22 29 29 H 1.48495 * 109.47153 * 240.00675 * 26 24 22 30 30 H 1.09009 * 109.46782 * 269.68083 * 1 2 3 31 31 H 1.08996 * 109.46840 * 149.68677 * 1 2 3 32 32 H 1.08991 * 109.47518 * 29.67927 * 1 2 3 33 33 H 1.08006 * 126.38094 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.46997 * 83.91260 * 11 10 8 35 35 H 1.09007 * 109.46962 * 203.90441 * 11 10 8 36 36 H 1.08994 * 109.47187 * 323.90582 * 11 10 8 37 37 H 1.08994 * 109.47525 * 210.00306 * 12 10 8 38 38 H 1.09005 * 109.46873 * 330.00152 * 12 10 8 39 39 H 0.96704 * 113.99605 * 300.00172 * 15 13 12 40 40 H 1.08994 * 109.47289 * 305.00032 * 16 13 12 41 41 H 1.08997 * 109.47170 * 65.00517 * 16 13 12 42 42 H 1.00895 * 111.00062 * 56.04569 * 17 16 13 43 43 H 1.09002 * 109.47043 * 299.99770 * 18 17 16 44 44 H 1.08999 * 109.47907 * 59.99672 * 18 17 16 45 45 H 0.96996 * 120.00076 * 0.02562 * 21 19 18 46 46 H 0.97003 * 119.99666 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 0.0034 5 1 4.3888 1.1730 0.0062 6 7 3.5999 -0.6694 -0.0037 7 6 2.3635 -1.1264 -0.0062 8 6 1.9506 -2.5445 -0.0146 9 8 0.7737 -2.8355 0.0760 10 7 2.8786 -3.5159 -0.1226 11 6 4.3009 -3.1682 -0.1704 12 6 2.4650 -4.9197 -0.1921 13 6 2.2501 -5.3162 -1.6541 14 1 3.1801 -5.1837 -2.2069 15 8 1.2337 -4.4912 -2.2269 16 6 1.8176 -6.7820 -1.7266 17 7 1.7272 -7.1969 -3.1329 18 6 1.3128 -8.6020 -3.2417 19 6 1.2319 -8.9907 -4.6955 20 8 1.4932 -8.1772 -5.5562 21 7 0.8692 -10.2425 -5.0391 22 6 0.7951 -10.5960 -6.3616 23 1 1.0277 -9.8716 -7.1281 24 6 0.4216 -11.8866 -6.7159 25 7 0.1390 -12.7682 -5.7832 26 14 0.3213 -12.3685 -8.5179 27 1 0.6864 -11.2033 -9.3629 28 1 1.2616 -13.4866 -8.7843 29 1 -1.0632 -12.7988 -8.8389 30 1 -0.3633 -0.0057 1.0278 31 1 -0.3633 -0.8871 -0.5187 32 1 -0.3634 0.8927 -0.5088 33 1 2.0219 2.1138 0.0004 34 1 4.6783 -3.0415 0.8444 35 1 4.8535 -3.9661 -0.6666 36 1 4.4292 -2.2384 -0.7245 37 1 3.2403 -5.5490 0.2449 38 1 1.5350 -5.0522 0.3609 39 1 0.3766 -4.5584 -1.7841 40 1 2.5502 -7.4029 -1.2110 41 1 0.8440 -6.8975 -1.2504 42 1 2.6002 -7.0388 -3.6134 43 1 2.0417 -9.2358 -2.7365 44 1 0.3356 -8.7298 -2.7761 45 1 0.6599 -10.8930 -4.3507 46 1 -0.1220 -13.6691 -6.0306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571578489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:09 Heat of formation + Delta-G solvation = -63.307711 kcal Electronic energy + Delta-G solvation = -28808.589617 eV Core-core repulsion = 24541.227354 eV Total energy + Delta-G solvation = -4267.362263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.61757 -40.75492 -40.15378 -38.60670 -36.51490 -36.11380 -35.55747 -33.95461 -33.27686 -32.59087 -31.23707 -28.89292 -28.14360 -27.52137 -26.72833 -25.24013 -23.74450 -22.59719 -21.58953 -21.07828 -20.19578 -19.91671 -18.94505 -18.21322 -17.95062 -17.45544 -17.15646 -17.00605 -16.56919 -16.47316 -16.10704 -16.00340 -15.70193 -15.10479 -15.01484 -14.81711 -14.38854 -14.25703 -14.17308 -13.90839 -13.86372 -13.67821 -13.49329 -13.43821 -13.19605 -12.99110 -12.85322 -12.71077 -12.53813 -12.41426 -12.11989 -12.03413 -11.58494 -11.52352 -11.20621 -10.93993 -10.36961 -10.35083 -10.02142 -9.81219 -9.49715 -9.26082 -8.47429 -5.96223 0.56847 1.20408 1.36232 1.41285 1.55884 1.83507 2.04489 2.22732 2.29590 2.41113 2.90813 3.19638 3.37994 3.46616 3.66807 3.85438 3.91707 4.06633 4.16815 4.18967 4.32135 4.40908 4.43122 4.49653 4.53398 4.56336 4.60277 4.64991 4.71957 4.79909 4.92576 4.97683 5.10805 5.11614 5.22795 5.40459 5.52643 5.57483 5.88383 6.10595 6.17473 6.36842 6.38204 6.59834 6.87632 6.89272 7.12159 7.19872 7.55444 8.11432 8.70201 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027288 B = 0.001708 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.845648 B =16387.822571 C =16570.287964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.180 4.180 3 C 0.005 3.995 4 N -0.369 5.369 5 H 0.464 0.536 6 N -0.264 5.264 7 C -0.042 4.042 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.599 5.599 11 C 0.075 3.925 12 C 0.089 3.911 13 C 0.101 3.899 14 H 0.091 0.909 15 O -0.564 6.564 16 C 0.035 3.965 17 N -0.680 5.680 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.275 1.275 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.377 0.623 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.342 0.658 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 25.762 20.275 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.190 4.190 3 C -0.140 4.140 4 N -0.085 5.085 5 H 0.313 0.687 6 N -0.102 5.102 7 C -0.201 4.201 8 C 0.384 3.616 9 O -0.436 6.436 10 N -0.331 5.331 11 C -0.068 4.068 12 C -0.035 4.035 13 C 0.040 3.960 14 H 0.108 0.892 15 O -0.370 6.370 16 C -0.095 4.095 17 N -0.313 5.313 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.200 1.200 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.243 0.757 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.161 0.839 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.619 25.963 19.276 33.737 hybrid contribution -0.221 -0.963 -0.033 0.989 sum 9.397 24.999 19.243 32.918 Atomic orbital electron populations 1.20093 0.88084 1.02767 1.02244 1.20704 0.98235 0.91164 1.08904 1.23251 0.83315 1.01578 1.05821 1.43505 1.09614 1.04041 1.51295 0.68748 1.73625 1.21916 0.94911 1.19721 1.21880 0.90727 0.94955 1.12558 1.17224 0.84990 0.83587 0.75803 1.90700 1.18047 1.82980 1.51850 1.47597 1.07857 1.05998 1.71610 1.22219 0.78622 1.03029 1.02910 1.22246 1.03472 0.81331 0.96409 1.22299 0.91697 0.88402 0.93614 0.89157 1.86570 1.22989 1.67014 1.60419 1.22674 1.02503 0.95914 0.88399 1.59916 1.38724 1.18692 1.13940 1.21539 1.02954 0.90118 0.91969 1.20945 0.82331 0.82271 0.92100 1.90497 1.55840 1.51560 1.53252 1.41930 1.60347 1.10806 1.07943 1.19704 1.45391 0.96976 0.84386 0.90505 1.26051 0.96084 0.94955 1.04201 1.69677 1.46237 1.05498 1.34633 0.84858 0.78372 0.78077 0.76931 1.19958 1.19382 1.19559 0.91414 0.92911 0.89716 0.75692 0.91638 0.89850 0.89424 0.86381 0.89673 0.77459 0.91854 0.89894 0.83937 0.91152 0.87949 0.76899 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 9.89 71.24 0.70 -0.60 16 2 C -0.18 -3.29 6.25 -19.72 -0.12 -3.41 16 3 C 0.01 0.05 11.97 83.54 1.00 1.05 16 4 N -0.37 -3.30 6.83 -57.51 -0.39 -3.70 16 5 H 0.46 0.17 8.96 -219.98 -1.97 -1.80 16 6 N -0.26 -4.41 8.75 -48.18 -0.42 -4.83 16 7 C -0.04 -0.94 6.83 42.46 0.29 -0.65 16 8 C 0.60 15.43 7.15 86.75 0.62 16.05 16 9 O -0.56 -17.05 13.72 0.76 0.01 -17.04 16 10 N -0.60 -12.40 2.83 -850.32 -2.40 -14.81 16 11 C 0.07 1.14 9.61 127.77 1.23 2.37 16 12 C 0.09 1.61 5.13 86.38 0.44 2.05 16 13 C 0.10 2.31 3.42 30.60 0.10 2.41 16 14 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 15 O -0.56 -17.26 12.15 -144.28 -1.75 -19.01 16 16 C 0.03 0.80 5.32 86.30 0.46 1.26 16 17 N -0.68 -22.71 6.07 -517.92 -3.15 -25.85 16 18 C 0.07 2.35 6.17 85.56 0.53 2.88 16 19 C 0.44 21.62 7.82 87.66 0.69 22.31 16 20 O -0.62 -36.48 15.78 -3.03 -0.05 -36.53 16 21 N -0.57 -30.28 5.29 -306.98 -1.62 -31.91 16 22 C -0.33 -19.59 9.68 84.04 0.81 -18.77 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 26 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.05 1.26 6.83 -2.39 -0.02 1.24 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 0.99 8.03 -2.38 -0.02 0.97 16 36 H 0.09 1.50 5.37 -2.39 -0.01 1.49 16 37 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.08 1.68 7.38 -2.38 -0.02 1.66 16 39 H 0.38 10.76 8.54 -74.05 -0.63 10.13 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.34 12.08 8.43 -89.70 -0.76 11.32 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.40 19.77 7.90 -92.71 -0.73 19.03 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -83.87 388.23 -3.28 -87.14 By element: Atomic # 1 Polarization: 47.03 SS G_CDS: -3.03 Total: 44.01 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 7.22 Total: 26.68 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -7.70 Total: -131.14 kcal Atomic # 8 Polarization: -70.79 SS G_CDS: -1.79 Total: -72.58 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -83.87 -3.28 -87.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571578489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.835 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds