Wall clock time and date at job start Tue Mar 31 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99940 * 2 1 4 4 C 1.52997 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47112 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47076 * 180.02562 * 5 4 3 7 7 C 1.34768 * 119.99956 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00079 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99879 * 180.02562 * 7 6 5 10 10 N 1.40100 * 120.00112 * 359.97438 * 9 7 6 11 11 C 1.34773 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21612 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.47430 * 119.99987 * 179.97438 * 11 10 9 14 14 C 1.41283 * 126.41544 * 0.04549 * 13 11 10 15 15 N 1.30450 * 108.02431 * 179.68178 * 14 13 11 16 16 N 1.39939 * 108.89458 * 0.43924 * 15 14 13 17 17 C 1.46491 * 125.75158 * 179.81322 * 16 15 14 18 18 C 1.50702 * 109.46957 * 269.69119 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.34263 * 108.48917 * 359.54930 * 16 15 14 27 27 C 1.50694 * 126.28514 * 180.26201 * 26 16 15 28 28 H 1.09000 * 109.47408 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47368 * 60.00362 * 1 2 3 30 30 H 1.09005 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47170 * 59.99506 * 3 2 1 32 32 H 1.09000 * 109.47201 * 300.00154 * 3 2 1 33 33 H 1.09007 * 109.46871 * 60.00150 * 4 3 2 34 34 H 1.09000 * 109.47383 * 300.00283 * 4 3 2 35 35 H 1.08997 * 109.47061 * 60.00543 * 5 4 3 36 36 H 1.09000 * 109.46846 * 300.00025 * 5 4 3 37 37 H 0.96996 * 119.99673 * 359.97438 * 6 5 4 38 38 H 0.97009 * 119.99874 * 179.97438 * 9 7 6 39 39 H 0.96999 * 119.99571 * 0.02562 * 10 9 7 40 40 H 1.08004 * 125.98627 * 359.95855 * 14 13 11 41 41 H 1.09004 * 109.47166 * 149.69385 * 17 16 15 42 42 H 1.08994 * 109.47507 * 29.69092 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47316 * 90.00399 * 27 26 16 45 45 H 1.09005 * 109.47060 * 210.00231 * 27 26 16 46 46 H 1.08998 * 109.47841 * 329.99761 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4668 0.0000 7 6 6.3820 3.5771 0.0000 8 8 5.8591 4.6748 -0.0005 9 7 7.7256 3.4706 -0.0005 10 7 8.3281 2.2058 -0.0005 11 6 9.6717 2.0994 -0.0005 12 8 10.3610 3.1013 -0.0010 13 6 10.3057 0.7684 0.0000 14 6 9.6400 -0.4777 -0.0003 15 7 10.5439 -1.4182 -0.0065 16 7 11.8125 -0.8276 -0.0002 17 6 13.0903 -1.5440 -0.0002 18 6 13.5283 -1.7900 1.4206 19 1 12.9159 -1.4472 2.2415 20 6 14.7079 -2.4581 1.6725 21 7 15.4534 -2.8758 0.6729 22 14 15.2470 -2.7696 3.4336 23 1 14.2181 -3.5834 4.1297 24 1 16.5399 -3.5002 3.4336 25 1 15.4119 -1.4726 4.1378 26 6 11.6611 0.5065 0.0001 27 6 12.7674 1.5297 0.0003 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 3.8358 3.1239 0.8896 36 1 3.8364 3.1228 -0.8905 37 1 6.0352 1.5911 0.0008 38 1 8.2754 4.2699 -0.0009 39 1 7.7783 1.4067 -0.0005 40 1 8.5701 -0.6257 -0.0004 41 1 13.8425 -0.9454 -0.5139 42 1 12.9720 -2.4979 -0.5142 43 1 16.2834 -3.3455 0.8501 44 1 13.0342 1.7766 -1.0273 45 1 12.4298 2.4297 0.5144 46 1 13.6384 1.1230 0.5142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626816562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:48 Heat of formation + Delta-G solvation = -10.280507 kcal Electronic energy + Delta-G solvation = -28344.652398 eV Core-core repulsion = 24079.589567 eV Total energy + Delta-G solvation = -4265.062831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05994 -40.45931 -38.85562 -38.42286 -35.82061 -35.71578 -34.01023 -32.39208 -32.13903 -31.55959 -30.57934 -27.55929 -27.28703 -26.72159 -25.35002 -23.61163 -22.58274 -22.34972 -21.39133 -20.47833 -19.68092 -18.65520 -17.70917 -17.02310 -16.85469 -16.83730 -16.38301 -15.98557 -15.82704 -15.16236 -15.12771 -15.10851 -14.64593 -14.61788 -14.52763 -14.19545 -13.98907 -13.37811 -12.97463 -12.71972 -12.56801 -12.40966 -12.32299 -12.17428 -11.90783 -11.66708 -11.59608 -11.58264 -11.35909 -11.19411 -10.93277 -10.78994 -10.44707 -10.34135 -10.16402 -10.04164 -9.73860 -9.56398 -8.76495 -8.73514 -8.50405 -8.04328 -6.39409 -4.47993 1.74708 1.94014 2.57948 2.60756 2.83554 3.16466 3.18476 3.21036 3.28131 3.34347 3.67173 4.19398 4.42026 4.43752 4.58903 4.64343 4.86326 4.87623 4.88403 4.94747 4.96950 5.01940 5.07998 5.20242 5.23182 5.30277 5.58076 5.58856 5.61452 5.70144 5.97390 5.99799 6.26331 6.33893 6.44218 6.51740 6.64838 6.66460 6.81227 7.01237 7.27547 7.45881 7.52182 7.66662 7.69996 8.10041 8.22043 8.43469 8.56987 9.19466 10.68652 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002034 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.359765 B =13763.511882 C =15244.140356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.065 3.935 4 C -0.135 4.135 5 C 0.141 3.859 6 N -0.745 5.745 7 C 0.715 3.285 8 O -0.579 6.579 9 N -0.526 5.526 10 N -0.537 5.537 11 C 0.610 3.390 12 O -0.546 6.546 13 C -0.329 4.329 14 C 0.057 3.943 15 N -0.289 5.289 16 N -0.310 5.310 17 C 0.250 3.750 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.909 3.091 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.176 3.824 27 C -0.101 4.101 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.395 0.605 38 H 0.443 0.557 39 H 0.416 0.584 40 H 0.176 0.824 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.013 7.382 -2.758 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.012 4.012 4 C -0.172 4.172 5 C 0.017 3.983 6 N -0.403 5.403 7 C 0.414 3.586 8 O -0.453 6.453 9 N -0.282 5.282 10 N -0.289 5.289 11 C 0.401 3.599 12 O -0.423 6.423 13 C -0.346 4.346 14 C -0.130 4.130 15 N -0.109 5.109 16 N -0.087 5.087 17 C 0.133 3.867 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.038 3.962 27 C -0.159 4.159 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.290 0.710 39 H 0.257 0.743 40 H 0.193 0.807 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.394 7.144 -2.823 23.675 hybrid contribution 0.050 0.120 0.928 0.938 sum -22.344 7.265 -1.895 23.572 Atomic orbital electron populations 1.22760 0.80641 1.02981 1.00094 1.87872 1.20003 1.27725 1.95470 1.22349 0.93091 0.84984 1.00804 1.21704 0.94113 0.96849 1.04574 1.21064 0.77802 0.96475 1.03000 1.45039 1.07003 1.07548 1.80684 1.15608 0.79878 0.84816 0.78329 1.91025 1.69879 1.25379 1.59067 1.44399 1.03330 1.00189 1.80249 1.44746 1.05999 0.98459 1.79723 1.17376 0.78981 0.88748 0.74796 1.90743 1.61834 1.38097 1.51612 1.19275 0.92557 0.91869 1.30944 1.23716 0.99146 0.89727 1.00450 1.77177 0.88384 1.22369 1.22942 1.49429 1.07352 1.03453 1.48422 1.19909 0.73879 0.93315 0.99572 1.21200 1.06893 1.39228 0.90889 0.91632 1.24923 0.95766 0.94542 0.98348 1.69901 1.13917 1.37475 1.31221 0.86371 0.77959 0.78754 0.83393 1.19875 1.20851 1.19813 1.21449 0.94932 0.86395 0.93462 1.20662 0.95296 0.96418 1.03523 0.93938 0.93952 0.89455 0.92803 0.92804 0.90034 0.90009 0.91011 0.91016 0.77046 0.71033 0.74279 0.80699 0.92393 0.92324 0.91978 0.90226 0.88520 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.01 10.70 -35.23 -0.38 -3.39 16 3 C 0.06 0.37 5.94 37.16 0.22 0.59 16 4 C -0.13 -0.72 5.70 -26.73 -0.15 -0.87 16 5 C 0.14 0.94 5.67 -4.04 -0.02 0.92 16 6 N -0.74 -5.89 5.52 -65.22 -0.36 -6.25 16 7 C 0.71 8.22 8.68 -86.92 -0.75 7.46 16 8 O -0.58 -8.64 17.18 5.29 0.09 -8.55 16 9 N -0.53 -6.02 6.26 27.63 0.17 -5.85 16 10 N -0.54 -5.83 6.25 30.43 0.19 -5.64 16 11 C 0.61 8.95 7.93 -12.52 -0.10 8.86 16 12 O -0.55 -9.38 14.68 5.27 0.08 -9.30 16 13 C -0.33 -5.33 6.13 -105.07 -0.64 -5.97 16 14 C 0.06 0.86 11.50 -16.98 -0.20 0.67 16 15 N -0.29 -5.68 12.50 30.86 0.39 -5.29 16 16 N -0.31 -6.50 3.56 -57.78 -0.21 -6.71 16 17 C 0.25 5.90 5.78 -5.20 -0.03 5.87 16 18 C -0.54 -14.04 9.39 -34.44 -0.32 -14.36 16 19 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 22 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.18 3.28 7.01 -81.60 -0.57 2.70 16 27 C -0.10 -1.68 9.34 36.00 0.34 -1.35 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.39 2.25 6.39 -40.82 -0.26 1.99 16 38 H 0.44 5.43 8.10 -182.59 -1.48 3.95 16 39 H 0.42 3.22 5.66 -182.60 -1.03 2.18 16 40 H 0.18 1.67 7.50 -52.48 -0.39 1.28 16 41 H 0.06 1.36 7.62 -51.93 -0.40 0.96 16 42 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.10 1.58 6.50 -51.93 -0.34 1.24 16 46 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -32.78 395.49 -8.07 -40.85 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.49 Total: 4.58 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.22 Total: 7.47 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.92 Total: -52.82 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.21 Total: -21.24 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.78 -8.07 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626816562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.569 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds