Wall clock time and date at job start Tue Mar 31 2020 22:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99940 * 2 1 4 4 C 1.52997 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47112 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47076 * 180.02562 * 5 4 3 7 7 C 1.34768 * 119.99956 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00079 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99879 * 180.02562 * 7 6 5 10 10 N 1.40100 * 120.00112 * 359.97438 * 9 7 6 11 11 C 1.34773 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21612 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.47430 * 119.99987 * 179.97438 * 11 10 9 14 14 C 1.41283 * 126.41544 * 0.04549 * 13 11 10 15 15 N 1.30450 * 108.02431 * 179.68178 * 14 13 11 16 16 N 1.39939 * 108.89458 * 0.43924 * 15 14 13 17 17 C 1.46491 * 125.75158 * 179.81322 * 16 15 14 18 18 C 1.50702 * 109.46957 * 269.69119 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.34263 * 108.48917 * 359.54930 * 16 15 14 27 27 C 1.50694 * 126.28514 * 180.26201 * 26 16 15 28 28 H 1.09000 * 109.47408 * 299.99742 * 1 2 3 29 29 H 1.09002 * 109.47368 * 60.00362 * 1 2 3 30 30 H 1.09005 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47170 * 59.99506 * 3 2 1 32 32 H 1.09000 * 109.47201 * 300.00154 * 3 2 1 33 33 H 1.09007 * 109.46871 * 60.00150 * 4 3 2 34 34 H 1.09000 * 109.47383 * 300.00283 * 4 3 2 35 35 H 1.08997 * 109.47061 * 60.00543 * 5 4 3 36 36 H 1.09000 * 109.46846 * 300.00025 * 5 4 3 37 37 H 0.96996 * 119.99673 * 359.97438 * 6 5 4 38 38 H 0.97009 * 119.99874 * 179.97438 * 9 7 6 39 39 H 0.96999 * 119.99571 * 0.02562 * 10 9 7 40 40 H 1.08004 * 125.98627 * 359.95855 * 14 13 11 41 41 H 1.09004 * 109.47166 * 149.69385 * 17 16 15 42 42 H 1.08994 * 109.47507 * 29.69092 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.47316 * 90.00399 * 27 26 16 45 45 H 1.09005 * 109.47060 * 210.00231 * 27 26 16 46 46 H 1.08998 * 109.47841 * 329.99761 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6181 2.4668 0.0000 7 6 6.3820 3.5771 0.0000 8 8 5.8591 4.6748 -0.0005 9 7 7.7256 3.4706 -0.0005 10 7 8.3281 2.2058 -0.0005 11 6 9.6717 2.0994 -0.0005 12 8 10.3610 3.1013 -0.0010 13 6 10.3057 0.7684 0.0000 14 6 9.6400 -0.4777 -0.0003 15 7 10.5439 -1.4182 -0.0065 16 7 11.8125 -0.8276 -0.0002 17 6 13.0903 -1.5440 -0.0002 18 6 13.5283 -1.7900 1.4206 19 1 12.9159 -1.4472 2.2415 20 6 14.7079 -2.4581 1.6725 21 7 15.4534 -2.8758 0.6729 22 14 15.2470 -2.7696 3.4336 23 1 14.2181 -3.5834 4.1297 24 1 16.5399 -3.5002 3.4336 25 1 15.4119 -1.4726 4.1378 26 6 11.6611 0.5065 0.0001 27 6 12.7674 1.5297 0.0003 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8892 34 1 3.8567 0.6439 0.8908 35 1 3.8358 3.1239 0.8896 36 1 3.8364 3.1228 -0.8905 37 1 6.0352 1.5911 0.0008 38 1 8.2754 4.2699 -0.0009 39 1 7.7783 1.4067 -0.0005 40 1 8.5701 -0.6257 -0.0004 41 1 13.8425 -0.9454 -0.5139 42 1 12.9720 -2.4979 -0.5142 43 1 16.2834 -3.3455 0.8501 44 1 13.0342 1.7766 -1.0273 45 1 12.4298 2.4297 0.5144 46 1 13.6384 1.1230 0.5142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626816562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:48 Heat of formation + Delta-G solvation = -35.408946 kcal Electronic energy + Delta-G solvation = -28345.742048 eV Core-core repulsion = 24079.589567 eV Total energy + Delta-G solvation = -4266.152482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38898 -41.45314 -39.97564 -38.91508 -36.80375 -36.49884 -35.80273 -33.92630 -33.01050 -32.76220 -31.76556 -29.03970 -28.14670 -27.88113 -25.87712 -25.37214 -23.81653 -22.89695 -22.24953 -21.73020 -20.83388 -19.81426 -18.92800 -18.72579 -17.79771 -17.36130 -17.26384 -16.80479 -16.73332 -16.55196 -16.33210 -16.08902 -15.86033 -15.56982 -15.47028 -15.19829 -15.05744 -14.79543 -14.29592 -14.07740 -13.63195 -13.57656 -13.45708 -13.10015 -12.96417 -12.90322 -12.72643 -12.69196 -12.48868 -12.28972 -12.03477 -12.02457 -11.87166 -11.84098 -11.69355 -11.02169 -10.74252 -10.58843 -10.32279 -10.26734 -9.70072 -9.23111 -8.36370 -6.52368 0.60121 0.74646 1.29640 1.40194 1.40608 1.49048 1.69425 1.90123 1.91901 2.33829 2.45320 2.89256 2.96234 3.46903 3.72817 3.87042 4.00387 4.02464 4.10755 4.18543 4.21071 4.48963 4.49658 4.52684 4.55752 4.60705 4.68675 4.72408 4.81364 4.90268 4.90441 5.06840 5.11106 5.14181 5.15894 5.31103 5.38377 5.50405 5.55865 5.68573 5.76454 6.02550 6.24781 6.31355 6.56292 6.60938 6.84027 7.18689 7.19248 7.41060 8.71077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002034 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.359765 B =13763.511882 C =15244.140356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.060 3.940 4 C -0.124 4.124 5 C 0.142 3.858 6 N -0.730 5.730 7 C 0.715 3.285 8 O -0.613 6.613 9 N -0.527 5.527 10 N -0.513 5.513 11 C 0.615 3.385 12 O -0.572 6.572 13 C -0.323 4.323 14 C 0.082 3.918 15 N -0.332 5.332 16 N -0.336 5.336 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.054 0.946 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.156 3.844 27 C -0.094 4.094 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.440 0.560 39 H 0.433 0.567 40 H 0.234 0.766 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.274 0.726 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.000 7.507 -2.183 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.017 4.017 4 C -0.162 4.162 5 C 0.018 3.982 6 N -0.388 5.388 7 C 0.414 3.586 8 O -0.491 6.491 9 N -0.281 5.281 10 N -0.266 5.266 11 C 0.404 3.596 12 O -0.450 6.450 13 C -0.340 4.340 14 C -0.105 4.105 15 N -0.151 5.151 16 N -0.112 5.112 17 C 0.148 3.852 18 C -0.594 4.594 19 H 0.072 0.928 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.192 1.192 26 C 0.019 3.981 27 C -0.152 4.152 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.245 0.755 38 H 0.285 0.715 39 H 0.278 0.722 40 H 0.250 0.750 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.438 7.231 -2.254 25.585 hybrid contribution 0.494 0.153 0.707 0.876 sum -23.944 7.383 -1.547 25.104 Atomic orbital electron populations 1.22909 0.79523 1.03713 1.00894 1.87822 1.21396 1.28800 1.95650 1.22442 0.93155 0.84532 1.01532 1.21593 0.93915 0.95777 1.04883 1.21123 0.76910 0.97385 1.02810 1.44966 1.07369 1.07185 1.79256 1.15692 0.79730 0.85064 0.78096 1.91006 1.70339 1.27061 1.60654 1.44415 1.03390 1.00017 1.80285 1.44354 1.05081 0.99097 1.78064 1.17072 0.79924 0.87677 0.74878 1.90742 1.62841 1.38623 1.52815 1.19424 0.91777 0.93054 1.29742 1.24614 1.01050 0.88100 0.96727 1.77140 0.88415 1.24213 1.25332 1.49103 1.07079 1.04075 1.50978 1.19384 0.75411 0.92339 0.98089 1.21378 1.07027 1.39312 0.91653 0.92789 1.25699 0.95753 0.94206 1.02041 1.69986 1.14309 1.38046 1.33009 0.85441 0.77671 0.78750 0.78885 1.19797 1.20030 1.19215 1.21901 0.96682 0.85820 0.93697 1.20634 0.94372 0.95984 1.04255 0.93168 0.93127 0.88866 0.92160 0.92077 0.89633 0.89731 0.91308 0.91211 0.75519 0.71484 0.72200 0.74959 0.93071 0.94848 0.91719 0.88847 0.88108 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -5.70 10.70 -148.98 -1.59 -7.30 16 3 C 0.06 0.56 5.94 71.98 0.43 0.99 16 4 C -0.12 -1.01 5.70 30.59 0.17 -0.84 16 5 C 0.14 1.57 5.67 86.38 0.49 2.06 16 6 N -0.73 -9.48 5.52 -478.53 -2.64 -12.12 16 7 C 0.72 14.95 8.68 179.06 1.55 16.50 16 8 O -0.61 -17.55 17.18 -4.00 -0.07 -17.62 16 9 N -0.53 -10.89 6.26 -184.74 -1.16 -12.05 16 10 N -0.51 -9.56 6.25 -175.88 -1.10 -10.66 16 11 C 0.61 16.63 7.93 86.67 0.69 17.32 16 12 O -0.57 -18.79 14.68 -4.07 -0.06 -18.85 16 13 C -0.32 -9.83 6.13 -20.15 -0.12 -9.95 16 14 C 0.08 2.26 11.50 85.65 0.99 3.24 16 15 N -0.33 -12.75 12.50 -56.28 -0.70 -13.45 16 16 N -0.34 -14.25 3.56 -336.72 -1.20 -15.45 16 17 C 0.27 13.03 5.78 85.64 0.50 13.53 16 18 C -0.56 -29.32 9.39 25.60 0.24 -29.08 16 19 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 20 C 0.02 1.29 5.46 84.66 0.46 1.75 16 21 N -0.92 -49.89 13.29 21.45 0.28 -49.60 16 22 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 C 0.16 5.76 7.01 42.14 0.30 6.06 16 27 C -0.09 -3.17 9.34 71.23 0.67 -2.50 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.41 3.09 6.39 -92.71 -0.59 2.50 16 38 H 0.44 10.13 8.10 -213.31 -1.73 8.40 16 39 H 0.43 4.85 5.66 -213.32 -1.21 3.64 16 40 H 0.23 3.21 7.50 -2.91 -0.02 3.19 16 41 H 0.05 2.51 7.62 -2.38 -0.02 2.49 16 42 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 44 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 45 H 0.10 3.27 6.50 -2.38 -0.02 3.26 16 46 H 0.07 2.55 7.70 -2.39 -0.02 2.53 16 Total: -1.00 -72.18 395.49 -1.10 -73.27 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -2.49 Total: 19.81 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 7.60 Total: 20.53 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -6.52 Total: -113.34 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.72 Total: -43.77 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.18 -1.10 -73.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626816562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.865 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds