Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.08993 * 109.47067 * 64.99512 * 14 13 12 16 16 N 1.46499 * 109.47022 * 304.99661 * 14 13 12 17 17 C 1.36938 * 120.00131 * 154.99538 * 16 14 13 18 18 H 1.07998 * 119.99543 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00096 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99602 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47447 * 89.99980 * 21 19 17 23 23 H 1.48500 * 109.46725 * 209.99780 * 21 19 17 24 24 H 1.48494 * 109.47473 * 329.99734 * 21 19 17 25 25 C 1.52999 * 109.47078 * 184.99847 * 14 13 12 26 26 C 1.53000 * 117.49921 * 248.74426 * 25 14 13 27 27 C 1.53006 * 117.49688 * 180.08594 * 25 14 13 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47159 * 299.99561 * 13 12 10 40 40 H 1.08998 * 109.47804 * 59.99832 * 13 12 10 41 41 H 0.97006 * 120.00053 * 335.00576 * 16 14 13 42 42 H 0.97002 * 120.00034 * 180.02562 * 20 19 17 43 43 H 1.09001 * 115.55332 * 34.41724 * 25 14 13 44 44 H 1.09000 * 117.49742 * 0.02562 * 26 25 14 45 45 H 1.08997 * 117.49987 * 145.02073 * 26 25 14 46 46 H 1.09004 * 117.49438 * 214.97980 * 27 25 14 47 47 H 1.08993 * 117.49637 * 359.97424 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 6 4.2926 -7.3174 0.0047 15 1 4.8592 -7.3184 0.9357 16 7 5.2134 -7.1878 -1.1273 17 6 6.4494 -7.7751 -1.0752 18 1 6.7451 -8.3341 -0.1998 19 6 7.3221 -7.6518 -2.1476 20 7 6.9619 -6.9702 -3.2143 21 14 9.0078 -8.4536 -2.0768 22 1 8.9240 -9.8316 -2.6237 23 1 9.9683 -7.6585 -2.8833 24 1 9.4713 -8.5079 -0.6671 25 6 3.5130 -8.6280 -0.1195 26 6 3.4909 -9.5549 1.0976 27 6 4.3173 -9.9295 -0.1353 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 2.6876 -6.1883 0.8941 40 1 2.6873 -6.1904 -0.8858 41 1 4.9477 -6.6859 -1.9138 42 1 7.5716 -6.8844 -3.9639 43 1 2.6145 -8.5841 -0.7350 44 1 4.0314 -9.2307 1.9869 45 1 2.5781 -10.1210 1.2826 46 1 3.9476 -10.7420 -0.7609 47 1 5.4017 -9.8520 -0.0576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661138227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = 60.039083 kcal Electronic energy + Delta-G solvation = -28680.936967 eV Core-core repulsion = 24829.772686 eV Total energy + Delta-G solvation = -3851.164281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01727 -39.07471 -37.53686 -37.08714 -34.57114 -33.50516 -33.34570 -32.03047 -31.12591 -30.12290 -28.02711 -27.77301 -24.26469 -23.94078 -23.14498 -22.50196 -21.91714 -21.65435 -20.14127 -19.48714 -18.12041 -17.89359 -17.12216 -16.47611 -15.94678 -15.28438 -15.18974 -14.92701 -14.77856 -14.57527 -14.33402 -14.01058 -13.91190 -13.62683 -13.29006 -13.13902 -12.99174 -12.96849 -12.66428 -12.27406 -12.10403 -12.01258 -11.44154 -11.38765 -11.33793 -11.13229 -10.87403 -10.86178 -10.69572 -10.52828 -10.13384 -9.93238 -9.79847 -9.53147 -9.29843 -9.03132 -8.96557 -8.76624 -8.54384 -8.23663 -7.05127 -5.82175 -3.11772 0.12575 0.74562 1.72295 2.72778 3.38116 3.43853 3.45693 3.46073 3.57944 4.12483 4.18202 4.41774 4.45606 4.59062 4.59500 4.68811 4.77579 4.97529 5.03552 5.20159 5.26154 5.28717 5.40007 5.47138 5.51969 5.53722 5.60502 5.63878 5.78357 5.79996 5.86297 5.93130 5.93535 5.98154 6.06607 6.10914 6.15247 6.20689 6.27478 6.41686 6.45938 6.56328 6.63607 6.72494 6.79654 6.97885 7.02279 7.64278 7.98257 8.09762 8.34535 8.73916 9.46721 10.01586 10.38006 11.39458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003105 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.733298 B = 9014.691554 C =10774.493649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.153 3.847 3 C -0.175 4.175 4 C -0.057 4.057 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.123 4.123 8 C -0.056 4.056 9 C -0.106 4.106 10 C 0.550 3.450 11 O -0.513 6.513 12 N -0.713 5.713 13 C 0.122 3.878 14 C 0.193 3.807 15 H 0.055 0.945 16 N -0.717 5.717 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.158 4.158 26 C -0.196 4.196 27 C -0.156 4.156 28 C 0.168 3.832 29 N -0.436 5.436 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.406 0.594 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.383 15.482 8.554 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.000 4.000 3 C -0.195 4.195 4 C -0.083 4.083 5 C -0.120 4.120 6 C -0.095 4.095 7 C -0.141 4.141 8 C -0.076 4.076 9 C -0.110 4.110 10 C 0.335 3.665 11 O -0.388 6.388 12 N -0.367 5.367 13 C -0.002 4.002 14 C 0.082 3.918 15 H 0.073 0.927 16 N -0.358 5.358 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.180 4.180 26 C -0.234 4.234 27 C -0.193 4.193 28 C 0.045 3.955 29 N -0.144 5.144 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.243 0.757 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.482 14.543 8.580 18.469 hybrid contribution 1.946 0.352 -0.496 2.039 sum -5.536 14.896 8.084 17.829 Atomic orbital electron populations 1.20762 0.88719 1.03615 1.03174 1.21684 0.97474 0.88118 0.92717 1.21739 0.95048 0.99295 1.03440 1.21417 0.94466 0.96955 0.95465 1.18811 0.94817 0.93962 1.04401 1.21121 0.92518 0.98623 0.97253 1.20883 1.00815 0.91873 1.00491 1.21637 0.92678 0.99645 0.93658 1.19981 0.93169 0.92665 1.05211 1.17877 0.87502 0.83140 0.77962 1.90805 1.12720 1.87081 1.48244 1.45906 1.11137 1.05078 1.74535 1.21560 0.94438 0.82659 1.01577 1.20060 0.89556 0.89209 0.92935 0.92739 1.42469 1.13608 1.63018 1.16705 1.19160 0.90668 1.26290 1.00694 0.91151 1.24712 0.98480 1.00836 0.96518 1.69663 1.36290 1.45147 1.06465 0.86282 0.84389 0.78874 0.77176 1.21776 1.21867 1.20794 1.23026 1.01104 0.93857 1.00028 1.22959 1.02155 1.05337 0.92948 1.22778 0.99675 0.97754 0.99126 1.18573 0.89270 0.91380 0.96280 1.68162 1.07819 1.27574 1.10835 0.90274 0.90810 0.89940 0.84698 0.84366 0.85042 0.84696 0.84071 0.75661 0.91659 0.91806 0.78012 0.93494 0.89122 0.89560 0.90104 0.90250 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.15 36.00 0.37 -0.66 16 2 C 0.15 1.98 6.78 -82.48 -0.56 1.42 16 3 C -0.18 -1.75 9.64 -39.79 -0.38 -2.14 16 4 C -0.06 -0.57 9.89 -39.20 -0.39 -0.96 16 5 C -0.12 -1.50 5.74 -106.82 -0.61 -2.12 16 6 C -0.08 -0.80 9.75 -39.43 -0.38 -1.19 16 7 C -0.12 -1.38 9.93 -40.03 -0.40 -1.78 16 8 C -0.06 -0.77 9.52 -39.16 -0.37 -1.14 16 9 C -0.11 -1.77 5.91 -104.61 -0.62 -2.38 16 10 C 0.55 10.33 7.76 -12.51 -0.10 10.24 16 11 O -0.51 -11.05 15.19 5.28 0.08 -10.97 16 12 N -0.71 -12.60 5.34 -61.38 -0.33 -12.93 16 13 C 0.12 2.17 5.22 -4.04 -0.02 2.15 16 14 C 0.19 3.61 2.70 -67.93 -0.18 3.43 16 15 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 16 N -0.72 -16.34 4.54 -53.43 -0.24 -16.58 16 17 C -0.24 -5.96 8.63 -15.06 -0.13 -6.09 16 18 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 21 Si 0.90 21.26 29.55 -169.99 -5.02 16.24 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.16 -2.79 5.36 -90.62 -0.49 -3.28 16 26 C -0.20 -3.01 10.18 -26.69 -0.27 -3.28 16 27 C -0.16 -2.78 9.78 -26.69 -0.26 -3.04 16 28 C 0.17 2.74 6.61 -84.58 -0.56 2.18 16 29 N -0.44 -7.37 8.33 -7.01 -0.06 -7.43 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.51 8.07 -51.92 -0.42 0.09 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.88 6.36 -52.49 -0.33 1.54 16 38 H 0.41 7.02 6.16 -40.82 -0.25 6.77 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.39 9.71 7.80 -40.82 -0.32 9.39 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 44 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.10 2.07 6.23 -51.93 -0.32 1.74 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -32.39 391.30 -11.02 -43.42 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -6.62 Total: 17.14 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -5.46 Total: -8.99 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.10 Total: -62.73 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -11.02 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661138227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.455 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds