Wall clock time and date at job start Tue Mar 31 2020 22:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.08993 * 109.47067 * 64.99512 * 14 13 12 16 16 N 1.46499 * 109.47022 * 304.99661 * 14 13 12 17 17 C 1.36938 * 120.00131 * 154.99538 * 16 14 13 18 18 H 1.07998 * 119.99543 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99934 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00096 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99602 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47447 * 89.99980 * 21 19 17 23 23 H 1.48500 * 109.46725 * 209.99780 * 21 19 17 24 24 H 1.48494 * 109.47473 * 329.99734 * 21 19 17 25 25 C 1.52999 * 109.47078 * 184.99847 * 14 13 12 26 26 C 1.53000 * 117.49921 * 248.74426 * 25 14 13 27 27 C 1.53006 * 117.49688 * 180.08594 * 25 14 13 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47159 * 299.99561 * 13 12 10 40 40 H 1.08998 * 109.47804 * 59.99832 * 13 12 10 41 41 H 0.97006 * 120.00053 * 335.00576 * 16 14 13 42 42 H 0.97002 * 120.00034 * 180.02562 * 20 19 17 43 43 H 1.09001 * 115.55332 * 34.41724 * 25 14 13 44 44 H 1.09000 * 117.49742 * 0.02562 * 26 25 14 45 45 H 1.08997 * 117.49987 * 145.02073 * 26 25 14 46 46 H 1.09004 * 117.49438 * 214.97980 * 27 25 14 47 47 H 1.08993 * 117.49637 * 359.97424 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 6 4.2926 -7.3174 0.0047 15 1 4.8592 -7.3184 0.9357 16 7 5.2134 -7.1878 -1.1273 17 6 6.4494 -7.7751 -1.0752 18 1 6.7451 -8.3341 -0.1998 19 6 7.3221 -7.6518 -2.1476 20 7 6.9619 -6.9702 -3.2143 21 14 9.0078 -8.4536 -2.0768 22 1 8.9240 -9.8316 -2.6237 23 1 9.9683 -7.6585 -2.8833 24 1 9.4713 -8.5079 -0.6671 25 6 3.5130 -8.6280 -0.1195 26 6 3.4909 -9.5549 1.0976 27 6 4.3173 -9.9295 -0.1353 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 2.6876 -6.1883 0.8941 40 1 2.6873 -6.1904 -0.8858 41 1 4.9477 -6.6859 -1.9138 42 1 7.5716 -6.8844 -3.9639 43 1 2.6145 -8.5841 -0.7350 44 1 4.0314 -9.2307 1.9869 45 1 2.5781 -10.1210 1.2826 46 1 3.9476 -10.7420 -0.7609 47 1 5.4017 -9.8520 -0.0576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661138227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:56 Heat of formation + Delta-G solvation = 40.111795 kcal Electronic energy + Delta-G solvation = -28681.801079 eV Core-core repulsion = 24829.772686 eV Total energy + Delta-G solvation = -3852.028393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99457 -40.43640 -38.98056 -38.11243 -36.08196 -35.14209 -34.43700 -32.99183 -32.69847 -31.32587 -29.48609 -28.79856 -25.84603 -24.96863 -24.63329 -23.37002 -23.22938 -23.00832 -21.55478 -20.89399 -19.38743 -19.06497 -18.69705 -17.53432 -17.02515 -16.86888 -16.53892 -16.26008 -16.01831 -15.67963 -15.67550 -15.38036 -15.12090 -14.92879 -14.74583 -14.52747 -14.00637 -13.88818 -13.75533 -13.59059 -13.10898 -12.98939 -12.96493 -12.89750 -12.66736 -12.42794 -12.30594 -12.29013 -12.23199 -11.97799 -11.72246 -11.47296 -11.15417 -11.00740 -10.88074 -10.77179 -10.10103 -10.02336 -9.67778 -9.24349 -8.99766 -7.86962 -5.15446 -0.81818 -0.17443 0.77556 1.50013 1.51862 1.58718 1.77108 2.19297 2.26213 2.58797 3.07564 3.14582 3.24104 3.48533 3.59182 3.69665 3.78649 3.84531 3.97987 3.98170 3.99134 4.16311 4.19208 4.33658 4.36891 4.38554 4.44362 4.53594 4.63868 4.69005 4.73418 4.78283 4.85754 4.89579 4.94807 4.98770 5.09616 5.15178 5.15922 5.18661 5.23888 5.36239 5.39709 5.46491 5.53739 5.60633 5.62466 5.85814 6.31566 6.60883 7.11811 7.31370 7.39789 8.09799 8.36656 9.35748 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012306 B = 0.003105 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.733298 B = 9014.691554 C =10774.493649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.139 3.861 3 C -0.175 4.175 4 C -0.045 4.045 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.136 4.136 8 C -0.050 4.050 9 C -0.153 4.153 10 C 0.546 3.454 11 O -0.552 6.552 12 N -0.711 5.711 13 C 0.131 3.869 14 C 0.200 3.800 15 H 0.059 0.941 16 N -0.723 5.723 17 C -0.219 4.219 18 H 0.078 0.922 19 C -0.069 4.069 20 N -0.967 5.967 21 Si 0.961 3.039 22 H -0.296 1.296 23 H -0.300 1.300 24 H -0.268 1.268 25 C -0.175 4.175 26 C -0.162 4.162 27 C -0.171 4.171 28 C 0.140 3.860 29 N -0.498 5.498 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.136 0.864 38 H 0.407 0.593 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.371 0.629 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 17.954 10.133 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.194 4.194 4 C -0.070 4.070 5 C -0.139 4.139 6 C -0.068 4.068 7 C -0.154 4.154 8 C -0.070 4.070 9 C -0.157 4.157 10 C 0.334 3.666 11 O -0.431 6.431 12 N -0.363 5.363 13 C 0.007 3.993 14 C 0.091 3.909 15 H 0.077 0.923 16 N -0.363 5.363 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.791 3.209 22 H -0.224 1.224 23 H -0.227 1.227 24 H -0.193 1.193 25 C -0.197 4.197 26 C -0.199 4.199 27 C -0.208 4.208 28 C 0.017 3.983 29 N -0.208 5.208 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.195 0.805 34 H 0.203 0.797 35 H 0.197 0.803 36 H 0.183 0.817 37 H 0.154 0.846 38 H 0.245 0.755 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.203 0.797 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.639 16.992 10.216 20.909 hybrid contribution 1.584 -0.321 -0.918 1.859 sum -5.055 16.671 9.298 19.747 Atomic orbital electron populations 1.20854 0.87278 1.04033 1.03907 1.22335 0.98811 0.88608 0.91512 1.22137 0.95559 0.99502 1.02245 1.21974 0.94660 0.97420 0.92963 1.19182 0.95948 0.93940 1.04859 1.21656 0.91774 1.00030 0.93374 1.21213 1.02177 0.91145 1.00863 1.21749 0.91773 1.00896 0.92621 1.19916 0.94187 0.91929 1.09640 1.18384 0.87336 0.84112 0.76818 1.90755 1.14319 1.87706 1.50323 1.45888 1.11065 1.04999 1.74398 1.21441 0.94138 0.82564 1.01207 1.20117 0.89160 0.90208 0.91431 0.92344 1.42571 1.13838 1.62684 1.17182 1.19459 0.91050 1.24327 1.00222 0.90421 1.25368 1.01719 1.02355 0.96664 1.69822 1.37202 1.47540 1.07193 0.85326 0.80757 0.77287 0.77501 1.22397 1.22729 1.19257 1.22908 1.01121 0.93092 1.02557 1.23034 1.02252 1.02761 0.91861 1.22736 0.98632 0.97926 1.01517 1.18849 0.89713 0.92450 0.97287 1.68095 1.08820 1.30104 1.13744 0.89284 0.87289 0.92516 0.80525 0.79655 0.80339 0.81729 0.84596 0.75525 0.90605 0.93527 0.79664 0.94391 0.89080 0.88536 0.87552 0.89562 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.15 71.23 0.72 -1.27 16 2 C 0.14 3.57 6.78 42.89 0.29 3.86 16 3 C -0.18 -2.97 9.64 22.13 0.21 -2.76 16 4 C -0.04 -0.72 9.89 22.52 0.22 -0.50 16 5 C -0.14 -3.24 5.74 -21.29 -0.12 -3.37 16 6 C -0.05 -0.89 9.75 22.37 0.22 -0.67 16 7 C -0.14 -2.83 9.93 21.98 0.22 -2.61 16 8 C -0.05 -1.42 9.52 22.54 0.21 -1.21 16 9 C -0.15 -5.39 5.91 -19.86 -0.12 -5.51 16 10 C 0.55 22.18 7.76 86.67 0.67 22.86 16 11 O -0.55 -25.83 15.19 -4.02 -0.06 -25.89 16 12 N -0.71 -26.81 5.34 -466.37 -2.49 -29.30 16 13 C 0.13 4.88 5.22 86.38 0.45 5.33 16 14 C 0.20 7.60 2.70 44.99 0.12 7.72 16 15 H 0.06 2.19 7.84 -2.39 -0.02 2.17 16 16 N -0.72 -33.90 4.54 -322.94 -1.47 -35.37 16 17 C -0.22 -11.12 8.63 84.03 0.73 -10.40 16 18 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 20 N -0.97 -56.95 13.06 21.65 0.28 -56.67 16 21 Si 0.96 44.30 29.55 68.60 2.03 46.33 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.18 -6.13 5.36 -10.79 -0.06 -6.19 16 26 C -0.16 -4.61 10.18 30.62 0.31 -4.29 16 27 C -0.17 -5.95 9.78 30.62 0.30 -5.65 16 28 C 0.14 4.70 6.61 40.62 0.27 4.97 16 29 N -0.50 -17.71 8.33 -176.10 -1.47 -19.18 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.25 8.07 -2.38 -0.02 1.23 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 3.83 6.36 -2.91 -0.02 3.81 16 38 H 0.41 14.98 6.16 -92.70 -0.57 14.41 16 39 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.37 19.55 7.80 -92.70 -0.72 18.83 16 42 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.09 3.18 8.11 -2.39 -0.02 3.16 16 44 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 45 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 47 H 0.08 3.25 6.23 -2.39 -0.01 3.24 16 Total: -1.00 -76.25 391.30 1.66 -74.59 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.28 Total: 48.45 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.12 Total: -2.95 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -5.14 Total: -140.51 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.25 1.66 -74.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661138227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.699 kcal (2) G-P(sol) polarization free energy of solvation -76.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds