Wall clock time and date at job start Tue Mar 31 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46559 * 294.99602 * 14 13 12 16 16 N 1.46500 * 109.47268 * 54.99677 * 14 13 12 17 17 C 1.36933 * 120.00205 * 205.00236 * 16 14 13 18 18 H 1.08004 * 119.99701 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99985 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99667 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00112 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47054 * 89.99648 * 21 19 17 23 23 H 1.48499 * 109.46843 * 209.99763 * 21 19 17 24 24 H 1.48498 * 109.46679 * 330.00037 * 21 19 17 25 25 C 1.52996 * 109.47305 * 174.99938 * 14 13 12 26 26 C 1.52999 * 117.49867 * 248.74725 * 25 14 13 27 27 C 1.52993 * 117.49935 * 180.08478 * 25 14 13 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47159 * 299.99561 * 13 12 10 40 40 H 1.08998 * 109.47804 * 59.99832 * 13 12 10 41 41 H 0.97001 * 119.99659 * 25.00554 * 16 14 13 42 42 H 0.96997 * 120.00064 * 180.02562 * 20 19 17 43 43 H 1.09007 * 115.55091 * 34.41518 * 25 14 13 44 44 H 1.08996 * 117.50030 * 359.97438 * 26 25 14 45 45 H 1.09004 * 117.49674 * 145.02179 * 26 25 14 46 46 H 1.09001 * 117.49867 * 214.97811 * 27 25 14 47 47 H 1.09000 * 117.50310 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 6 4.2926 -7.3174 0.0047 15 1 4.8583 -7.3201 -0.9270 16 7 5.2146 -7.1857 1.1355 17 6 6.4504 -7.7731 1.0833 18 1 6.7456 -8.3331 0.2082 19 6 7.3242 -7.6480 2.1546 20 7 8.5123 -8.2122 2.1042 21 14 6.8139 -6.6788 3.6678 22 1 6.1494 -7.5871 4.6365 23 1 8.0159 -6.0764 4.2983 24 1 5.8708 -5.6025 3.2713 25 6 3.5132 -8.6278 0.1319 26 6 3.6607 -9.4136 1.4364 27 6 4.3177 -9.9289 0.1534 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 2.6876 -6.1883 0.8941 40 1 2.6873 -6.1904 -0.8858 41 1 4.9495 -6.6825 1.9213 42 1 9.1227 -8.1250 2.8529 43 1 2.5402 -8.6457 -0.3591 44 1 4.3133 -8.9973 2.2037 45 1 2.7849 -9.9489 1.8032 46 1 3.8738 -10.8030 -0.3232 47 1 5.4022 -9.8515 0.0764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661138228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:01 Heat of formation + Delta-G solvation = 67.207834 kcal Electronic energy + Delta-G solvation = -28922.639624 eV Core-core repulsion = 25071.786203 eV Total energy + Delta-G solvation = -3850.853421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10839 -39.21457 -37.73499 -37.19400 -34.51586 -33.58747 -33.28340 -32.11300 -31.29521 -30.35627 -28.40439 -27.98372 -24.34158 -24.00901 -22.99216 -22.58286 -22.18311 -21.47539 -20.18011 -19.24219 -18.21130 -18.12655 -17.35844 -16.56508 -16.06108 -15.39441 -15.36188 -14.98344 -14.86494 -14.74148 -14.30088 -14.23628 -13.97810 -13.67044 -13.35621 -13.05434 -13.04104 -12.90273 -12.73942 -12.43350 -12.34694 -12.19119 -11.59214 -11.49482 -11.44356 -11.18761 -10.97371 -10.79975 -10.61906 -10.57231 -10.24468 -9.89702 -9.58812 -9.54922 -9.23586 -9.11027 -9.01967 -8.85465 -8.67987 -8.33918 -7.39073 -5.85535 -3.22187 0.03304 0.65863 1.63351 2.63562 3.30876 3.34918 3.35940 3.40784 3.45163 4.04273 4.07877 4.37407 4.50080 4.50689 4.54607 4.61013 4.69245 4.87806 4.94865 5.12288 5.18188 5.24224 5.32128 5.34952 5.41753 5.45862 5.53327 5.69102 5.70297 5.77201 5.77635 5.85831 5.89533 5.90230 5.98137 6.03806 6.05769 6.18752 6.32210 6.34100 6.38305 6.58801 6.63615 6.66103 6.86734 7.02158 7.14345 7.86591 7.91149 7.98271 8.33011 8.60493 9.10899 9.83165 10.02853 11.32105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003295 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.970807 B = 8496.897969 C = 9874.923356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.154 3.846 3 C -0.175 4.175 4 C -0.056 4.056 5 C -0.118 4.118 6 C -0.074 4.074 7 C -0.124 4.124 8 C -0.058 4.058 9 C -0.109 4.109 10 C 0.549 3.451 11 O -0.510 6.510 12 N -0.718 5.718 13 C 0.119 3.881 14 C 0.198 3.802 15 H 0.066 0.934 16 N -0.744 5.744 17 C -0.244 4.244 18 H 0.094 0.906 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.875 3.125 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.177 4.177 26 C -0.165 4.165 27 C -0.170 4.170 28 C 0.169 3.831 29 N -0.437 5.437 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.406 0.594 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.089 0.911 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.816 18.281 -5.773 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.001 3.999 3 C -0.195 4.195 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.142 4.142 8 C -0.078 4.078 9 C -0.113 4.113 10 C 0.335 3.665 11 O -0.385 6.385 12 N -0.371 5.371 13 C -0.005 4.005 14 C 0.088 3.912 15 H 0.084 0.916 16 N -0.387 5.387 17 C -0.373 4.373 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.577 5.577 21 Si 0.705 3.295 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.199 4.199 26 C -0.202 4.202 27 C -0.207 4.207 28 C 0.045 3.955 29 N -0.145 5.145 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.243 0.757 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.197 0.803 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.869 17.285 -5.844 21.238 hybrid contribution 0.830 1.349 1.302 2.050 sum -10.039 18.634 -4.542 21.648 Atomic orbital electron populations 1.20768 0.88663 1.03596 1.03274 1.21695 0.97499 0.88105 0.92559 1.21751 0.95054 0.99328 1.03343 1.21429 0.94474 0.96970 0.95358 1.18819 0.94822 0.93976 1.04388 1.21141 0.92520 0.98665 0.96995 1.20895 1.00898 0.91842 1.00536 1.21643 0.92679 0.99675 0.93853 1.19976 0.93165 0.92671 1.05451 1.17895 0.87534 0.83123 0.77948 1.90812 1.12672 1.87056 1.48003 1.45958 1.11115 1.05211 1.74849 1.21603 0.94527 0.82558 1.01822 1.19971 0.89313 0.89467 0.92490 0.91626 1.42866 1.15211 1.63802 1.16808 1.19020 0.89033 1.26429 1.02826 0.88876 1.24623 0.96013 1.00176 0.97713 1.69683 1.07618 1.48349 1.32011 0.86706 0.77481 0.80514 0.84753 1.21061 1.21824 1.20241 1.22996 0.99827 0.94385 1.02692 1.22841 1.01879 1.03140 0.92382 1.22897 1.00929 0.95354 1.01518 1.18563 0.89296 0.91348 0.96278 1.68160 1.07784 1.27614 1.10960 0.90202 0.90762 0.89954 0.84626 0.84293 0.84941 0.84575 0.84130 0.75743 0.91713 0.91387 0.80343 0.93008 0.89300 0.87254 0.91082 0.90869 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.15 36.00 0.37 -0.61 16 2 C 0.15 1.91 6.78 -82.48 -0.56 1.35 16 3 C -0.17 -1.66 9.64 -39.79 -0.38 -2.04 16 4 C -0.06 -0.53 9.89 -39.20 -0.39 -0.92 16 5 C -0.12 -1.44 5.74 -106.82 -0.61 -2.05 16 6 C -0.07 -0.74 9.75 -39.43 -0.38 -1.13 16 7 C -0.12 -1.32 9.93 -40.03 -0.40 -1.72 16 8 C -0.06 -0.76 9.52 -39.16 -0.37 -1.13 16 9 C -0.11 -1.73 5.91 -104.61 -0.62 -2.35 16 10 C 0.55 9.86 7.76 -12.51 -0.10 9.76 16 11 O -0.51 -10.55 15.19 5.28 0.08 -10.47 16 12 N -0.72 -11.99 5.34 -61.38 -0.33 -12.32 16 13 C 0.12 1.98 5.22 -4.04 -0.02 1.96 16 14 C 0.20 3.52 2.86 -67.93 -0.19 3.32 16 15 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 16 N -0.74 -15.65 2.88 -53.42 -0.15 -15.80 16 17 C -0.24 -6.10 8.64 -15.06 -0.13 -6.23 16 18 H 0.09 2.53 7.14 -52.48 -0.37 2.16 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 21 Si 0.88 21.02 27.74 -169.99 -4.71 16.31 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 25 C -0.18 -3.01 5.70 -90.63 -0.52 -3.53 16 26 C -0.17 -3.00 9.74 -26.69 -0.26 -3.26 16 27 C -0.17 -3.04 9.87 -26.70 -0.26 -3.30 16 28 C 0.17 2.63 6.61 -84.58 -0.56 2.07 16 29 N -0.44 -7.11 8.33 -7.01 -0.06 -7.17 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.47 8.07 -51.92 -0.42 0.05 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 1.74 6.36 -52.49 -0.33 1.41 16 38 H 0.41 6.55 6.16 -40.82 -0.25 6.30 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 44 H 0.11 2.31 6.68 -51.93 -0.35 1.96 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.11 2.26 6.22 -51.93 -0.32 1.93 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -32.92 385.27 -10.60 -43.52 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.52 Total: 16.40 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -5.49 Total: -9.62 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.24 Total: -61.95 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.92 -10.60 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661138228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.731 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds