Wall clock time and date at job start Tue Mar 31 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39233 * 119.15540 * 2 1 4 4 C 1.36631 * 119.90319 * 180.02562 * 3 2 1 5 5 C 1.40795 * 118.15509 * 359.97438 * 4 3 2 6 6 C 1.40478 * 121.25139 * 180.02562 * 5 4 3 7 7 C 1.36317 * 120.08360 * 179.69981 * 6 5 4 8 8 C 1.38903 * 121.05537 * 0.56688 * 7 6 5 9 9 C 1.38710 * 120.72849 * 359.42668 * 8 7 6 10 10 C 1.47439 * 120.33622 * 180.29931 * 9 8 7 11 11 O 1.21597 * 120.00063 * 179.97438 * 10 9 8 12 12 N 1.34784 * 119.99692 * 0.02562 * 10 9 8 13 13 C 1.46490 * 119.99857 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47052 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.46559 * 294.99602 * 14 13 12 16 16 N 1.46500 * 109.47268 * 54.99677 * 14 13 12 17 17 C 1.36933 * 120.00205 * 205.00236 * 16 14 13 18 18 H 1.08004 * 119.99701 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99985 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99667 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00112 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47054 * 89.99648 * 21 19 17 23 23 H 1.48499 * 109.46843 * 209.99763 * 21 19 17 24 24 H 1.48498 * 109.46679 * 330.00037 * 21 19 17 25 25 C 1.52996 * 109.47305 * 174.99938 * 14 13 12 26 26 C 1.52999 * 117.49867 * 248.74725 * 25 14 13 27 27 C 1.52993 * 117.49935 * 180.08478 * 25 14 13 28 28 C 1.41551 * 118.94855 * 0.02562 * 5 4 3 29 29 N 1.31234 * 119.15534 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47555 * 269.98834 * 1 2 3 31 31 H 1.09008 * 109.46959 * 29.98583 * 1 2 3 32 32 H 1.08996 * 109.46989 * 149.98146 * 1 2 3 33 33 H 1.08004 * 120.04744 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.92298 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95898 * 359.97438 * 6 5 4 36 36 H 1.08001 * 119.47106 * 180.29129 * 7 6 5 37 37 H 1.08002 * 119.63980 * 179.71181 * 8 7 6 38 38 H 0.97005 * 119.99783 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47159 * 299.99561 * 13 12 10 40 40 H 1.08998 * 109.47804 * 59.99832 * 13 12 10 41 41 H 0.97001 * 119.99659 * 25.00554 * 16 14 13 42 42 H 0.96997 * 120.00064 * 180.02562 * 20 19 17 43 43 H 1.09007 * 115.55091 * 34.41518 * 25 14 13 44 44 H 1.08996 * 117.50030 * 359.97438 * 26 25 14 45 45 H 1.09004 * 117.49674 * 145.02179 * 26 25 14 46 46 H 1.09001 * 117.49867 * 214.97811 * 27 25 14 47 47 H 1.09000 * 117.50310 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 0.0057 8 6 5.5503 -2.4509 0.0003 9 6 4.1632 -2.4394 0.0004 10 6 3.4079 -3.7056 0.0013 11 8 2.1921 -3.6883 0.0018 12 7 4.0653 -4.8823 0.0026 13 6 3.3149 -6.1404 0.0040 14 6 4.2926 -7.3174 0.0047 15 1 4.8583 -7.3201 -0.9270 16 7 5.2146 -7.1857 1.1355 17 6 6.4504 -7.7731 1.0833 18 1 6.7456 -8.3331 0.2082 19 6 7.3242 -7.6480 2.1546 20 7 8.5123 -8.2122 2.1042 21 14 6.8139 -6.6788 3.6678 22 1 6.1494 -7.5871 4.6365 23 1 8.0159 -6.0764 4.2983 24 1 5.8708 -5.6025 3.2713 25 6 3.5132 -8.6278 0.1319 26 6 3.6607 -9.4136 1.4364 27 6 4.3177 -9.9289 0.1534 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8902 -0.5137 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6323 2.1437 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2128 0.8565 -0.0009 36 1 7.3495 -1.2956 0.0104 37 1 6.0764 -3.3942 0.0007 38 1 5.0352 -4.8960 0.0025 39 1 2.6876 -6.1883 0.8941 40 1 2.6873 -6.1904 -0.8858 41 1 4.9495 -6.6825 1.9213 42 1 9.1227 -8.1250 2.8529 43 1 2.5402 -8.6457 -0.3591 44 1 4.3133 -8.9973 2.2037 45 1 2.7849 -9.9489 1.8032 46 1 3.8738 -10.8030 -0.3232 47 1 5.4022 -9.8515 0.0764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661138228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:00 Heat of formation + Delta-G solvation = 46.800327 kcal Electronic energy + Delta-G solvation = -28923.524560 eV Core-core repulsion = 25071.786203 eV Total energy + Delta-G solvation = -3851.738357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02286 -40.50691 -39.20601 -38.14186 -35.95160 -35.11244 -34.46462 -33.12068 -32.85022 -31.50552 -29.87290 -28.82579 -25.73506 -24.95477 -24.63777 -23.49446 -23.38448 -22.91403 -21.46263 -20.74678 -19.73172 -19.09183 -18.76469 -17.56098 -17.12387 -16.87979 -16.61193 -16.35378 -16.18869 -15.71545 -15.70186 -15.51855 -15.04295 -14.82894 -14.70714 -14.48618 -14.31308 -13.99907 -13.84596 -13.77161 -13.15263 -13.10910 -12.98008 -12.97759 -12.66897 -12.52373 -12.32738 -12.28890 -12.14709 -12.06176 -11.63872 -11.49734 -11.16758 -11.09987 -10.88456 -10.66886 -10.12901 -10.06648 -9.70403 -9.33591 -9.27135 -7.97561 -5.30155 -0.84903 -0.20047 0.74864 1.36436 1.40134 1.44554 1.74238 2.16295 2.21476 2.48595 3.06836 3.12146 3.21310 3.35268 3.53294 3.61928 3.67558 3.82047 3.85564 3.95877 3.96158 4.16188 4.22090 4.28852 4.34725 4.42143 4.45062 4.51224 4.58011 4.67835 4.72206 4.76928 4.84882 4.92737 4.95767 4.96028 5.07910 5.13404 5.16970 5.19092 5.21214 5.34146 5.42502 5.52667 5.58155 5.60223 5.83162 5.86838 6.25221 6.55972 7.08911 7.10148 7.27553 7.84404 8.03744 9.23552 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003295 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.970807 B = 8496.897969 C = 9874.923356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.141 3.859 3 C -0.175 4.175 4 C -0.045 4.045 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.138 4.138 8 C -0.053 4.053 9 C -0.154 4.154 10 C 0.547 3.453 11 O -0.548 6.548 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.199 3.801 15 H 0.064 0.936 16 N -0.741 5.741 17 C -0.206 4.206 18 H 0.068 0.932 19 C -0.049 4.049 20 N -0.979 5.979 21 Si 0.934 3.066 22 H -0.290 1.290 23 H -0.299 1.299 24 H -0.259 1.259 25 C -0.166 4.166 26 C -0.171 4.171 27 C -0.172 4.172 28 C 0.141 3.859 29 N -0.497 5.497 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.177 0.823 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.363 0.637 42 H 0.255 0.745 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 21.756 -6.104 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 C -0.195 4.195 4 C -0.070 4.070 5 C -0.139 4.139 6 C -0.068 4.068 7 C -0.155 4.155 8 C -0.073 4.073 9 C -0.158 4.158 10 C 0.335 3.665 11 O -0.426 6.426 12 N -0.369 5.369 13 C 0.004 3.996 14 C 0.090 3.910 15 H 0.082 0.918 16 N -0.384 5.384 17 C -0.336 4.336 18 H 0.086 0.914 19 C -0.241 4.241 20 N -0.630 5.630 21 Si 0.764 3.236 22 H -0.217 1.217 23 H -0.226 1.226 24 H -0.184 1.184 25 C -0.187 4.187 26 C -0.209 4.209 27 C -0.209 4.209 28 C 0.018 3.982 29 N -0.207 5.207 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.202 0.798 35 H 0.196 0.804 36 H 0.182 0.818 37 H 0.156 0.844 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.196 0.804 42 H 0.064 0.936 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.120 0.880 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.797 20.772 -6.201 24.679 hybrid contribution 1.040 0.338 1.299 1.698 sum -10.758 21.109 -4.902 24.194 Atomic orbital electron populations 1.20856 0.87253 1.04168 1.03823 1.22326 0.98803 0.88586 0.91420 1.22141 0.95553 0.99551 1.02207 1.21973 0.94672 0.97449 0.92951 1.19182 0.95922 0.93979 1.04847 1.21658 0.91802 1.00045 0.93296 1.21224 1.02215 0.91195 1.00885 1.21778 0.91813 1.00940 0.92794 1.19926 0.94150 0.91998 1.09685 1.18339 0.87334 0.84007 0.76843 1.90767 1.14216 1.87645 1.50020 1.45948 1.11113 1.05142 1.74738 1.21490 0.94034 0.82012 1.02035 1.20083 0.89099 0.90767 0.91018 0.91845 1.42803 1.14486 1.63316 1.17773 1.18901 0.89833 1.23824 1.01090 0.91407 1.25172 0.96216 1.02184 1.00532 1.69831 1.09118 1.51178 1.32859 0.85733 0.76891 0.79522 0.81461 1.21699 1.22615 1.18444 1.22989 1.00665 0.92991 1.02029 1.22798 1.02342 1.03870 0.91860 1.22823 0.99105 0.97087 1.01906 1.18843 0.89712 0.92427 0.97252 1.68097 1.08761 1.30036 1.13772 0.89553 0.87238 0.92253 0.80595 0.79757 0.80449 0.81756 0.84371 0.75544 0.92502 0.90122 0.80418 0.93599 0.86171 0.90498 0.88484 0.88041 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.15 71.23 0.72 -1.12 16 2 C 0.14 3.37 6.78 42.89 0.29 3.66 16 3 C -0.18 -2.74 9.64 22.13 0.21 -2.53 16 4 C -0.05 -0.67 9.89 22.52 0.22 -0.45 16 5 C -0.14 -3.02 5.74 -21.29 -0.12 -3.14 16 6 C -0.05 -0.81 9.75 22.37 0.22 -0.59 16 7 C -0.14 -2.62 9.93 21.98 0.22 -2.40 16 8 C -0.05 -1.38 9.52 22.54 0.21 -1.17 16 9 C -0.15 -5.03 5.91 -19.86 -0.12 -5.15 16 10 C 0.55 20.49 7.76 86.67 0.67 21.17 16 11 O -0.55 -23.86 15.19 -4.02 -0.06 -23.92 16 12 N -0.72 -24.51 5.34 -466.37 -2.49 -27.00 16 13 C 0.13 4.27 5.22 86.38 0.45 4.72 16 14 C 0.20 7.04 2.86 44.99 0.13 7.16 16 15 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 16 N -0.74 -31.44 2.88 -322.93 -0.93 -32.37 16 17 C -0.21 -10.57 8.64 84.03 0.73 -9.84 16 18 H 0.07 3.84 7.14 -2.91 -0.02 3.81 16 19 C -0.05 -2.73 5.50 84.86 0.47 -2.26 16 20 N -0.98 -59.78 13.97 21.65 0.30 -59.48 16 21 Si 0.93 44.44 27.74 68.60 1.90 46.35 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 25 C -0.17 -5.40 5.70 -10.80 -0.06 -5.46 16 26 C -0.17 -6.08 9.74 30.62 0.30 -5.78 16 27 C -0.17 -6.04 9.87 30.62 0.30 -5.73 16 28 C 0.14 4.43 6.61 40.62 0.27 4.69 16 29 N -0.50 -16.64 8.33 -176.10 -1.47 -18.11 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.09 8.07 -2.38 -0.02 1.07 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.14 3.49 6.36 -2.91 -0.02 3.47 16 38 H 0.41 13.49 6.16 -92.70 -0.57 12.91 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.36 15.73 5.66 -92.71 -0.52 15.21 16 42 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.12 3.26 8.11 -2.38 -0.02 3.24 16 44 H 0.08 3.26 6.68 -2.39 -0.02 3.25 16 45 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 46 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 47 H 0.07 3.13 6.22 -2.39 -0.01 3.11 16 Total: -1.00 -77.68 385.27 2.23 -75.46 By element: Atomic # 1 Polarization: 43.46 SS G_CDS: -0.14 Total: 43.32 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.11 Total: -4.22 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -4.58 Total: -136.97 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.35 kcal Total: -77.68 2.23 -75.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661138228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.257 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds