Wall clock time and date at job start Tue Mar 31 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36537 * 120.09759 * 2 1 4 4 C 1.40718 * 118.24626 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.27656 * 179.68249 * 4 3 2 6 6 C 1.36129 * 119.64665 * 179.75279 * 5 4 3 7 7 C 1.39440 * 120.91473 * 0.50760 * 6 5 4 8 8 C 1.35986 * 121.09330 * 359.76270 * 7 6 5 9 9 C 1.40828 * 119.73757 * 359.97438 * 8 7 6 10 10 N 1.33243 * 121.00030 * 179.97438 * 9 8 7 11 11 C 1.31899 * 121.30269 * 180.02562 * 10 9 8 12 12 C 1.48272 * 119.24294 * 180.02562 * 11 10 9 13 13 O 1.21503 * 120.00324 * 174.14877 * 12 11 10 14 14 N 1.34773 * 119.99882 * 354.14425 * 12 11 10 15 15 C 1.46499 * 120.00521 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47659 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47021 * 65.00311 * 16 15 14 18 18 N 1.46504 * 109.47001 * 305.00436 * 16 15 14 19 19 C 1.36936 * 120.00183 * 155.00066 * 18 16 15 20 20 H 1.08005 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99894 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00028 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99736 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47336 * 59.99932 * 23 21 19 25 25 H 1.48504 * 109.47024 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47360 * 300.00022 * 23 21 19 27 27 C 1.52998 * 109.47425 * 185.00409 * 16 15 14 28 28 C 1.52996 * 117.49767 * 248.74784 * 27 16 15 29 29 C 1.53000 * 117.50016 * 180.08683 * 27 16 15 30 30 H 1.08996 * 109.47396 * 263.15350 * 1 2 3 31 31 H 1.09002 * 109.46782 * 23.14867 * 1 2 3 32 32 H 1.08993 * 109.47116 * 143.14465 * 1 2 3 33 33 H 1.08004 * 120.87307 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.17879 * 0.25763 * 5 4 3 35 35 H 1.07999 * 119.54456 * 180.27263 * 6 5 4 36 36 H 1.08004 * 119.45182 * 179.73660 * 7 6 5 37 37 H 1.08006 * 120.13515 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99998 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47279 * 300.01060 * 15 14 12 40 40 H 1.09007 * 109.46791 * 60.00225 * 15 14 12 41 41 H 0.97000 * 119.99750 * 334.99851 * 18 16 15 42 42 H 0.97003 * 119.99723 * 179.97438 * 22 21 19 43 43 H 1.08998 * 115.55019 * 34.41409 * 27 16 15 44 44 H 1.08998 * 117.50011 * 359.97438 * 28 27 16 45 45 H 1.09001 * 117.50216 * 145.01640 * 28 27 16 46 46 H 1.09003 * 117.49652 * 214.97662 * 29 27 16 47 47 H 1.08999 * 117.49675 * 359.97438 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1813 0.0000 4 6 3.5981 1.1358 -0.0006 5 6 4.3656 2.3118 -0.0072 6 6 5.7244 2.2292 -0.0025 7 6 6.3668 0.9916 -0.0016 8 6 5.6569 -0.1682 -0.0007 9 6 4.2492 -0.1256 0.0000 10 7 3.5287 -1.2464 0.0003 11 6 2.2101 -1.2135 0.0004 12 6 1.4537 -2.4887 0.0015 13 8 0.2435 -2.4772 0.1088 14 7 2.1086 -3.6607 -0.1168 15 6 1.3614 -4.9208 -0.1152 16 6 2.3354 -6.0916 -0.2611 17 1 2.9812 -6.1383 0.6157 18 7 3.1539 -5.8993 -1.4608 19 6 4.3897 -6.4828 -1.5474 20 1 4.7611 -7.0845 -0.7310 21 6 5.1650 -6.3010 -2.6844 22 7 4.7126 -5.5673 -3.6790 23 14 6.8511 -7.0965 -2.8021 24 1 6.7113 -8.5710 -2.6952 25 1 7.4715 -6.7508 -4.1063 26 1 7.7111 -6.5995 -1.6982 27 6 1.5482 -7.3977 -0.3848 28 6 1.6325 -8.3864 0.7797 29 6 2.3480 -8.6929 -0.5384 30 1 -0.3634 -0.1225 1.0203 31 1 -0.3633 0.9450 -0.4040 32 1 -0.3633 -0.8222 -0.6164 33 1 1.6676 2.1256 -0.0004 34 1 3.8805 3.2767 -0.0079 35 1 6.3130 3.1347 -0.0031 36 1 7.4462 0.9536 -0.0021 37 1 6.1705 -1.1183 -0.0005 38 1 3.0748 -3.6700 -0.2022 39 1 0.8148 -5.0180 0.8228 40 1 0.6579 -4.9271 -0.9479 41 1 2.8205 -5.3586 -2.1939 42 1 5.2545 -5.4400 -4.4733 43 1 0.5993 -7.3261 -0.9165 44 1 2.2492 -8.1066 1.6338 45 1 0.7394 -8.9656 1.0140 46 1 1.9252 -9.4736 -1.1708 47 1 3.4351 -8.6144 -0.5516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661147360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:42 Heat of formation + Delta-G solvation = 57.878691 kcal Electronic energy + Delta-G solvation = -28809.250638 eV Core-core repulsion = 24957.992675 eV Total energy + Delta-G solvation = -3851.257963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11955 -39.33190 -37.64968 -36.90616 -34.89132 -34.07943 -33.27985 -31.68888 -31.09143 -30.26234 -28.08373 -27.02889 -25.34946 -23.60304 -22.67156 -22.28995 -22.14284 -21.67904 -20.45833 -19.64746 -18.29377 -17.88128 -17.17258 -16.71989 -15.54313 -15.48167 -15.35877 -14.98224 -14.61596 -14.55499 -14.37950 -14.17553 -13.82864 -13.58956 -13.36212 -13.13660 -13.07503 -12.98863 -12.82928 -12.21402 -12.02933 -11.73491 -11.66734 -11.60810 -11.33859 -11.13644 -10.85461 -10.82889 -10.69309 -10.44690 -10.13427 -9.95024 -9.88999 -9.57840 -9.31526 -9.22482 -8.94444 -8.85648 -8.51628 -8.32377 -7.01394 -5.77631 -3.07087 0.14908 0.60718 1.86455 2.44854 3.31769 3.39980 3.42517 3.47228 3.47955 4.08132 4.10442 4.42485 4.44159 4.61970 4.62439 4.64810 4.81325 4.97277 5.03441 5.17682 5.24504 5.27205 5.48658 5.53317 5.54515 5.63340 5.66303 5.76182 5.81255 5.82038 5.88811 5.93007 5.99209 6.02802 6.07980 6.18819 6.21426 6.27185 6.31292 6.40032 6.48664 6.56935 6.62381 6.72441 6.79491 6.92282 6.99793 7.63224 7.67638 8.00748 8.38701 8.51357 9.50982 10.05040 10.41054 11.44168 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.003681 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.114718 B = 7605.447258 C = 9919.904514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.076 4.076 4 C -0.082 4.082 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.075 4.075 9 C 0.119 3.881 10 N -0.428 5.428 11 C 0.119 3.881 12 C 0.563 3.437 13 O -0.540 6.540 14 N -0.688 5.688 15 C 0.116 3.884 16 C 0.193 3.807 17 H 0.055 0.945 18 N -0.716 5.716 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.928 5.928 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.158 4.158 28 C -0.196 4.196 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.421 0.579 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 14.174 9.381 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.102 4.102 4 C -0.084 4.084 5 C -0.126 4.126 6 C -0.125 4.125 7 C -0.133 4.133 8 C -0.094 4.094 9 C -0.005 4.005 10 N -0.139 5.139 11 C -0.036 4.036 12 C 0.347 3.653 13 O -0.418 6.418 14 N -0.338 5.338 15 C -0.008 4.008 16 C 0.082 3.918 17 H 0.073 0.927 18 N -0.356 5.356 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.204 4.204 22 N -0.576 5.576 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.180 4.180 28 C -0.234 4.234 29 C -0.193 4.193 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.160 0.840 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.260 0.740 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.507 13.277 9.447 16.668 hybrid contribution 0.988 0.429 -0.590 1.228 sum -2.519 13.705 8.858 16.512 Atomic orbital electron populations 1.21061 0.88866 1.03229 1.03940 1.20550 0.98523 0.92096 0.97611 1.21302 0.92393 0.98340 0.98201 1.18963 0.94221 0.94549 1.00689 1.20941 0.94084 0.96954 1.00656 1.20976 0.94636 0.98022 0.98818 1.20912 1.00545 0.91969 0.99837 1.20997 0.91178 0.99780 0.97407 1.18862 0.94248 0.87614 0.99784 1.67896 1.06467 1.30575 1.08935 1.21296 0.89579 0.93975 0.98707 1.17859 0.86571 0.83150 0.77678 1.90691 1.13050 1.86740 1.51356 1.45901 1.12812 1.04820 1.70310 1.21691 0.94770 0.82716 1.01619 1.20047 0.90505 0.89093 0.92120 0.92665 1.42426 1.16539 1.60252 1.16427 1.19095 0.92272 1.24702 1.00740 0.91216 1.24698 0.98525 1.00500 0.96680 1.69650 1.37779 1.43007 1.07147 0.86354 0.84540 0.79016 0.76766 1.21307 1.21811 1.21300 1.23025 1.00676 0.93283 1.01040 1.22963 1.02662 1.05005 0.92796 1.22779 1.00511 0.98190 0.97801 0.90568 0.92502 0.88019 0.83976 0.85265 0.85545 0.85146 0.84059 0.74029 0.91340 0.91474 0.78046 0.93493 0.89119 0.89549 0.90099 0.90241 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.68 36.01 0.31 -1.08 16 2 C -0.08 -1.18 5.89 -104.48 -0.62 -1.80 16 3 C -0.08 -0.90 9.50 -39.26 -0.37 -1.27 16 4 C -0.08 -1.04 5.75 -106.71 -0.61 -1.66 16 5 C -0.11 -1.06 9.77 -39.52 -0.39 -1.44 16 6 C -0.11 -0.97 9.96 -39.89 -0.40 -1.36 16 7 C -0.11 -1.16 9.94 -39.94 -0.40 -1.55 16 8 C -0.08 -0.99 9.99 -39.41 -0.39 -1.38 16 9 C 0.12 1.79 6.61 -84.85 -0.56 1.23 16 10 N -0.43 -7.30 9.48 -7.54 -0.07 -7.37 16 11 C 0.12 1.96 6.75 -82.96 -0.56 1.40 16 12 C 0.56 9.99 7.75 -12.14 -0.09 9.90 16 13 O -0.54 -9.91 13.22 5.36 0.07 -9.84 16 14 N -0.69 -12.41 5.37 -61.11 -0.33 -12.73 16 15 C 0.12 2.01 5.21 -4.04 -0.02 1.99 16 16 C 0.19 3.64 2.70 -67.93 -0.18 3.46 16 17 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 18 N -0.72 -16.69 4.54 -53.43 -0.24 -16.93 16 19 C -0.24 -6.13 8.63 -15.06 -0.13 -6.26 16 20 H 0.07 1.76 6.91 -52.48 -0.36 1.39 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 23 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 C -0.16 -2.77 5.36 -90.62 -0.49 -3.25 16 28 C -0.20 -2.99 10.18 -26.69 -0.27 -3.26 16 29 C -0.16 -2.77 9.78 -26.69 -0.26 -3.04 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 32 H 0.10 1.47 5.81 -51.93 -0.30 1.16 16 33 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 38 H 0.42 8.17 7.46 -40.82 -0.30 7.87 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 44 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.10 2.10 6.23 -51.93 -0.32 1.78 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -30.22 390.02 -11.16 -41.38 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -6.64 Total: 19.01 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -5.53 Total: -9.68 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: 0.08 Total: -63.50 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.22 -11.16 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661147360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.258 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds