Wall clock time and date at job start Tue Mar 31 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36537 * 120.09759 * 2 1 4 4 C 1.40718 * 118.24626 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.27656 * 179.68249 * 4 3 2 6 6 C 1.36129 * 119.64665 * 179.75279 * 5 4 3 7 7 C 1.39440 * 120.91473 * 0.50760 * 6 5 4 8 8 C 1.35986 * 121.09330 * 359.76270 * 7 6 5 9 9 C 1.40828 * 119.73757 * 359.97438 * 8 7 6 10 10 N 1.33243 * 121.00030 * 179.97438 * 9 8 7 11 11 C 1.31899 * 121.30269 * 180.02562 * 10 9 8 12 12 C 1.48272 * 119.24294 * 180.02562 * 11 10 9 13 13 O 1.21503 * 120.00324 * 174.14877 * 12 11 10 14 14 N 1.34773 * 119.99882 * 354.14425 * 12 11 10 15 15 C 1.46499 * 120.00521 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47659 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47021 * 65.00311 * 16 15 14 18 18 N 1.46504 * 109.47001 * 305.00436 * 16 15 14 19 19 C 1.36936 * 120.00183 * 155.00066 * 18 16 15 20 20 H 1.08005 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99894 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00028 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99736 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47336 * 59.99932 * 23 21 19 25 25 H 1.48504 * 109.47024 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47360 * 300.00022 * 23 21 19 27 27 C 1.52998 * 109.47425 * 185.00409 * 16 15 14 28 28 C 1.52996 * 117.49767 * 248.74784 * 27 16 15 29 29 C 1.53000 * 117.50016 * 180.08683 * 27 16 15 30 30 H 1.08996 * 109.47396 * 263.15350 * 1 2 3 31 31 H 1.09002 * 109.46782 * 23.14867 * 1 2 3 32 32 H 1.08993 * 109.47116 * 143.14465 * 1 2 3 33 33 H 1.08004 * 120.87307 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.17879 * 0.25763 * 5 4 3 35 35 H 1.07999 * 119.54456 * 180.27263 * 6 5 4 36 36 H 1.08004 * 119.45182 * 179.73660 * 7 6 5 37 37 H 1.08006 * 120.13515 * 179.97438 * 8 7 6 38 38 H 0.97001 * 119.99998 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47279 * 300.01060 * 15 14 12 40 40 H 1.09007 * 109.46791 * 60.00225 * 15 14 12 41 41 H 0.97000 * 119.99750 * 334.99851 * 18 16 15 42 42 H 0.97003 * 119.99723 * 179.97438 * 22 21 19 43 43 H 1.08998 * 115.55019 * 34.41409 * 27 16 15 44 44 H 1.08998 * 117.50011 * 359.97438 * 28 27 16 45 45 H 1.09001 * 117.50216 * 145.01640 * 28 27 16 46 46 H 1.09003 * 117.49652 * 214.97662 * 29 27 16 47 47 H 1.08999 * 117.49675 * 359.97438 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1813 0.0000 4 6 3.5981 1.1358 -0.0006 5 6 4.3656 2.3118 -0.0072 6 6 5.7244 2.2292 -0.0025 7 6 6.3668 0.9916 -0.0016 8 6 5.6569 -0.1682 -0.0007 9 6 4.2492 -0.1256 0.0000 10 7 3.5287 -1.2464 0.0003 11 6 2.2101 -1.2135 0.0004 12 6 1.4537 -2.4887 0.0015 13 8 0.2435 -2.4772 0.1088 14 7 2.1086 -3.6607 -0.1168 15 6 1.3614 -4.9208 -0.1152 16 6 2.3354 -6.0916 -0.2611 17 1 2.9812 -6.1383 0.6157 18 7 3.1539 -5.8993 -1.4608 19 6 4.3897 -6.4828 -1.5474 20 1 4.7611 -7.0845 -0.7310 21 6 5.1650 -6.3010 -2.6844 22 7 4.7126 -5.5673 -3.6790 23 14 6.8511 -7.0965 -2.8021 24 1 6.7113 -8.5710 -2.6952 25 1 7.4715 -6.7508 -4.1063 26 1 7.7111 -6.5995 -1.6982 27 6 1.5482 -7.3977 -0.3848 28 6 1.6325 -8.3864 0.7797 29 6 2.3480 -8.6929 -0.5384 30 1 -0.3634 -0.1225 1.0203 31 1 -0.3633 0.9450 -0.4040 32 1 -0.3633 -0.8222 -0.6164 33 1 1.6676 2.1256 -0.0004 34 1 3.8805 3.2767 -0.0079 35 1 6.3130 3.1347 -0.0031 36 1 7.4462 0.9536 -0.0021 37 1 6.1705 -1.1183 -0.0005 38 1 3.0748 -3.6700 -0.2022 39 1 0.8148 -5.0180 0.8228 40 1 0.6579 -4.9271 -0.9479 41 1 2.8205 -5.3586 -2.1939 42 1 5.2545 -5.4400 -4.4733 43 1 0.5993 -7.3261 -0.9165 44 1 2.2492 -8.1066 1.6338 45 1 0.7394 -8.9656 1.0140 46 1 1.9252 -9.4736 -1.1708 47 1 3.4351 -8.6144 -0.5516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661147360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:42 Heat of formation + Delta-G solvation = 39.983465 kcal Electronic energy + Delta-G solvation = -28810.026633 eV Core-core repulsion = 24957.992675 eV Total energy + Delta-G solvation = -3852.033958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15436 -40.60563 -39.08976 -37.93434 -36.25691 -35.43022 -34.84478 -32.79029 -32.61196 -31.37831 -29.68694 -27.98855 -26.56037 -25.41190 -23.93644 -23.45774 -23.02521 -23.02038 -21.82171 -21.10724 -19.62620 -19.00571 -18.86158 -17.69254 -16.96336 -16.90934 -16.54181 -16.45577 -15.97693 -15.71494 -15.48673 -15.43870 -15.11694 -14.96289 -14.86699 -14.50298 -14.15165 -13.98160 -13.94093 -13.64145 -13.17802 -12.95454 -12.92493 -12.66878 -12.60856 -12.59323 -12.47974 -12.42871 -12.26502 -12.04007 -11.73356 -11.38439 -11.11878 -11.00358 -10.92739 -10.78497 -10.43772 -10.11098 -9.67744 -9.21646 -9.00306 -7.88724 -5.16454 -0.83556 -0.34588 0.92270 1.39073 1.47560 1.49052 1.54566 2.07754 2.21895 2.57163 3.00232 3.07092 3.08034 3.47532 3.54455 3.66993 3.73594 3.77335 3.88186 3.98719 4.10304 4.17505 4.21718 4.33242 4.36117 4.39024 4.40421 4.54441 4.63129 4.66075 4.77057 4.82262 4.86736 4.90209 4.94318 5.05732 5.09948 5.13290 5.15818 5.30983 5.37920 5.40474 5.44030 5.46663 5.49097 5.60313 5.62276 5.87525 6.30128 6.39676 6.71787 7.10461 7.38207 8.09338 8.34762 9.34137 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.003681 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.114718 B = 7605.447258 C = 9919.904514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.058 4.058 4 C -0.095 4.095 5 C -0.100 4.100 6 C -0.102 4.102 7 C -0.096 4.096 8 C -0.114 4.114 9 C 0.090 3.910 10 N -0.464 5.464 11 C 0.090 3.910 12 C 0.559 3.441 13 O -0.551 6.551 14 N -0.695 5.695 15 C 0.125 3.875 16 C 0.197 3.803 17 H 0.053 0.947 18 N -0.723 5.723 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.070 4.070 22 N -0.968 5.968 23 Si 0.961 3.039 24 H -0.280 1.280 25 H -0.301 1.301 26 H -0.280 1.280 27 C -0.171 4.171 28 C -0.161 4.161 29 C -0.174 4.174 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.371 0.629 42 H 0.247 0.753 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.087 0.913 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 16.614 10.895 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.083 4.083 4 C -0.097 4.097 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.133 4.133 9 C -0.034 4.034 10 N -0.175 5.175 11 C -0.063 4.063 12 C 0.345 3.655 13 O -0.431 6.431 14 N -0.345 5.345 15 C 0.001 3.999 16 C 0.088 3.912 17 H 0.070 0.930 18 N -0.363 5.363 19 C -0.352 4.352 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.619 5.619 23 Si 0.791 3.209 24 H -0.206 1.206 25 H -0.228 1.228 26 H -0.206 1.206 27 C -0.193 4.193 28 C -0.198 4.198 29 C -0.211 4.211 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.249 0.751 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.203 0.797 42 H 0.055 0.945 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.106 0.894 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.475 15.685 11.021 19.482 hybrid contribution 1.028 -0.219 -0.972 1.431 sum -2.447 15.466 10.050 18.606 Atomic orbital electron populations 1.20962 0.87890 1.03814 1.03553 1.20736 0.99266 0.91933 0.98807 1.21771 0.92086 0.99124 0.95360 1.19303 0.95105 0.94653 1.00661 1.21412 0.94391 0.97282 0.98765 1.21470 0.94891 0.98712 0.96868 1.21316 1.01851 0.91554 0.96840 1.21054 0.90975 1.00561 1.00734 1.19276 0.94976 0.88369 1.00803 1.67777 1.07003 1.32427 1.10340 1.21251 0.89831 0.94233 1.00984 1.18205 0.86643 0.83637 0.77040 1.90670 1.13395 1.87095 1.51899 1.45950 1.12305 1.05361 1.70853 1.21616 0.94145 0.82027 1.02103 1.20144 0.90438 0.90634 0.90003 0.92952 1.42531 1.16531 1.59903 1.17289 1.19411 0.92802 1.22792 1.00155 0.90624 1.25378 1.01884 1.02047 0.96922 1.69814 1.38910 1.45463 1.07670 0.85400 0.80964 0.78357 0.76185 1.20623 1.22805 1.20615 1.22888 1.00623 0.92253 1.03520 1.23034 1.02845 1.02428 0.91510 1.22731 0.99149 0.98664 1.00555 0.90574 0.89244 0.90793 0.79575 0.81288 0.81450 0.82581 0.85810 0.75057 0.89548 0.92304 0.79698 0.94465 0.88484 0.88785 0.87259 0.89430 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 8.68 71.24 0.62 -1.90 16 2 C -0.10 -2.89 5.89 -19.77 -0.12 -3.00 16 3 C -0.06 -1.23 9.50 22.48 0.21 -1.02 16 4 C -0.10 -2.26 5.75 -21.22 -0.12 -2.38 16 5 C -0.10 -1.55 9.77 22.31 0.22 -1.33 16 6 C -0.10 -1.43 9.96 22.07 0.22 -1.21 16 7 C -0.10 -1.78 9.94 22.04 0.22 -1.56 16 8 C -0.11 -3.13 9.99 22.38 0.22 -2.90 16 9 C 0.09 2.79 6.61 40.48 0.27 3.05 16 10 N -0.46 -16.95 9.48 -177.77 -1.69 -18.64 16 11 C 0.09 3.13 6.75 42.29 0.29 3.42 16 12 C 0.56 21.07 7.75 86.91 0.67 21.74 16 13 O -0.55 -21.15 13.22 -3.72 -0.05 -21.20 16 14 N -0.69 -26.69 5.37 -465.56 -2.50 -29.19 16 15 C 0.13 4.48 5.21 86.38 0.45 4.93 16 16 C 0.20 7.58 2.70 44.99 0.12 7.70 16 17 H 0.05 2.05 7.84 -2.39 -0.02 2.03 16 18 N -0.72 -35.08 4.54 -322.94 -1.47 -36.55 16 19 C -0.22 -11.68 8.63 84.03 0.73 -10.96 16 20 H 0.08 3.87 6.91 -2.91 -0.02 3.85 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 23 Si 0.96 46.04 29.55 68.60 2.03 48.07 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 C -0.17 -5.91 5.36 -10.80 -0.06 -5.96 16 28 C -0.16 -4.54 10.18 30.62 0.31 -4.23 16 29 C -0.17 -6.09 9.78 30.62 0.30 -5.79 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 32 H 0.07 2.19 5.81 -2.39 -0.01 2.18 16 33 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 38 H 0.41 17.31 7.46 -92.71 -0.69 16.62 16 39 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.10 3.23 8.11 -2.39 -0.02 3.22 16 44 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 45 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.08 3.18 6.23 -2.39 -0.01 3.17 16 Total: -1.00 -70.49 390.02 1.22 -69.27 By element: Atomic # 1 Polarization: 52.40 SS G_CDS: -0.40 Total: 52.00 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.02 Total: -4.90 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -5.37 Total: -143.24 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.49 1.22 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661147360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.257 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds