Wall clock time and date at job start Tue Mar 31 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39316 * 119.10989 * 2 1 4 4 C 1.36582 * 119.90193 * 179.97438 * 3 2 1 5 5 C 1.40896 * 118.15831 * 0.02562 * 4 3 2 6 6 C 1.40181 * 121.22177 * 179.97438 * 5 4 3 7 7 C 1.38543 * 119.40301 * 179.97438 * 6 5 4 8 8 C 1.47771 * 119.80559 * 179.97438 * 7 6 5 9 9 O 1.21560 * 119.99712 * 0.04456 * 8 7 6 10 10 N 1.34773 * 119.99736 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47424 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46820 * 65.00270 * 12 11 10 14 14 N 1.46492 * 109.47149 * 305.00072 * 12 11 10 15 15 C 1.36944 * 119.99788 * 155.00255 * 14 12 11 16 16 H 1.07993 * 120.00235 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99535 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00303 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99616 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46721 * 60.00421 * 19 17 15 21 21 H 1.48497 * 109.47055 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47385 * 300.00472 * 19 17 15 23 23 C 1.53002 * 109.47112 * 184.99593 * 12 11 10 24 24 C 1.52998 * 117.50339 * 248.74992 * 23 12 11 25 25 C 1.53000 * 117.49764 * 180.08571 * 23 12 11 26 26 C 1.40630 * 120.38894 * 0.02562 * 7 6 5 27 27 C 1.35695 * 120.92298 * 359.97438 * 26 7 6 28 28 C 1.40756 * 120.11329 * 0.02562 * 27 26 7 29 29 N 1.31113 * 119.11663 * 179.73155 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00308 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99460 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00178 * 1 2 3 33 33 H 1.07999 * 120.05177 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.92082 * 179.97438 * 4 3 2 35 35 H 1.08009 * 120.29790 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00641 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47059 * 300.00031 * 11 10 8 38 38 H 1.09007 * 109.47351 * 59.99903 * 11 10 8 39 39 H 0.96999 * 120.00405 * 334.99268 * 14 12 11 40 40 H 0.97007 * 120.00122 * 179.97438 * 18 17 15 41 41 H 1.09007 * 115.54654 * 34.42420 * 23 12 11 42 42 H 1.09003 * 117.49897 * 359.97438 * 24 23 12 43 43 H 1.08996 * 117.50082 * 145.02113 * 24 23 12 44 44 H 1.08998 * 117.49868 * 214.97990 * 25 23 12 45 45 H 1.09000 * 117.50146 * 0.02562 * 25 23 12 46 46 H 1.08003 * 119.53615 * 179.97438 * 26 7 6 47 47 H 1.08009 * 119.94602 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2361 0.0005 5 6 4.2325 0.0032 0.0005 6 6 5.6332 -0.0524 0.0005 7 6 6.2650 -1.2854 0.0010 8 6 7.7411 -1.3543 0.0004 9 8 8.3973 -0.3310 0.0003 10 7 8.3598 -2.5517 0.0004 11 6 9.8232 -2.6201 0.0004 12 6 10.2653 -4.0848 0.0010 13 1 9.9545 -4.5584 -0.9302 14 7 9.6481 -4.7807 1.1327 15 6 9.4561 -6.1356 1.0811 16 1 9.7595 -6.6911 0.2060 17 6 8.8717 -6.7951 2.1537 18 7 8.5025 -6.1183 3.2204 19 14 8.6093 -8.6433 2.0830 20 1 9.9188 -9.3230 1.9143 21 1 7.9733 -9.1015 3.3442 22 1 7.7280 -8.9746 0.9347 23 6 11.7884 -4.1577 0.1266 24 6 12.5748 -4.6512 -1.0894 25 6 12.4302 -5.5465 0.1438 26 6 5.5098 -2.4717 0.0010 27 6 4.1534 -2.4348 0.0010 28 6 3.4805 -1.1985 0.0005 29 7 2.1450 -1.1454 0.0054 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6312 2.1445 -0.0004 34 1 4.0926 2.1702 0.0001 35 1 6.2147 0.8579 0.0009 36 1 7.8361 -3.3682 0.0012 37 1 10.2101 -2.1237 -0.8896 38 1 10.2102 -2.1237 0.8904 39 1 9.3754 -4.2819 1.9186 40 1 8.0938 -6.5791 3.9698 41 1 12.2469 -3.3837 0.7423 42 1 12.0071 -4.9244 -1.9789 43 1 13.5508 -4.2023 -1.2737 44 1 13.3111 -5.6861 0.7703 45 1 11.7674 -6.4082 0.0652 46 1 6.0166 -3.4254 0.0010 47 1 3.5890 -3.3557 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661177620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:04 Heat of formation + Delta-G solvation = 50.436145 kcal Electronic energy + Delta-G solvation = -28130.799456 eV Core-core repulsion = 24279.218760 eV Total energy + Delta-G solvation = -3851.580696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05964 -39.52886 -37.66991 -36.91424 -34.75061 -33.73186 -33.40821 -32.28818 -30.92731 -30.18361 -28.73648 -27.56273 -24.25183 -24.00919 -23.24769 -22.30185 -21.98107 -21.70108 -20.55685 -19.67224 -18.25830 -17.98912 -17.17613 -16.56692 -15.96388 -15.50473 -15.26531 -14.98350 -14.78085 -14.53850 -14.46301 -14.05751 -13.95397 -13.70838 -13.51419 -13.26629 -13.16738 -13.13309 -12.94198 -12.47537 -12.17571 -12.15209 -11.53210 -11.39657 -11.35810 -11.16671 -10.89997 -10.87356 -10.75327 -10.73691 -10.18004 -9.96524 -9.84721 -9.67216 -9.52632 -9.32637 -9.00914 -8.89636 -8.68970 -8.33141 -7.08642 -5.84404 -3.14537 0.11377 0.55008 1.78661 2.38719 3.36597 3.38082 3.43177 3.44810 3.45192 3.95284 4.01180 4.35876 4.38822 4.48117 4.56868 4.60069 4.76987 4.88874 5.03146 5.08614 5.17793 5.21096 5.26758 5.29263 5.43654 5.49010 5.57913 5.61457 5.70021 5.71221 5.72202 5.85112 5.87880 5.90629 5.97268 6.04445 6.15050 6.19040 6.23375 6.35276 6.37376 6.52053 6.56698 6.64502 6.74246 6.84551 6.95249 7.61751 7.74809 7.85110 8.32034 8.46207 9.44384 9.97960 10.34177 11.37029 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.002758 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.586893 B =10148.569278 C =12045.353952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.030 4.030 7 C -0.127 4.127 8 C 0.554 3.446 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.118 3.882 12 C 0.192 3.808 13 H 0.056 0.944 14 N -0.717 5.717 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.007 4.007 18 N -0.928 5.928 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 C -0.066 4.066 27 C -0.100 4.100 28 C 0.149 3.851 29 N -0.478 5.478 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.410 0.590 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.141 0.859 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 13.404 -8.511 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.049 4.049 7 C -0.130 4.130 8 C 0.341 3.659 9 O -0.431 6.431 10 N -0.356 5.356 11 C -0.006 4.006 12 C 0.082 3.918 13 H 0.074 0.926 14 N -0.358 5.358 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.575 5.575 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.212 1.212 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 C -0.087 4.087 27 C -0.118 4.118 28 C 0.028 3.972 29 N -0.188 5.188 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.248 0.752 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.159 0.841 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.150 13.048 -8.515 18.595 hybrid contribution 0.218 -0.578 0.479 0.781 sum -9.932 12.470 -8.036 17.853 Atomic orbital electron populations 1.20797 0.88615 1.03744 1.03302 1.21550 0.97201 0.88260 0.92083 1.21689 0.94977 0.99242 1.04151 1.21543 0.94476 0.97267 0.93634 1.18780 0.94387 0.94277 1.04733 1.21395 0.92173 0.98030 0.93347 1.20022 0.93596 0.94030 1.05331 1.18134 0.86983 0.83901 0.76865 1.90736 1.66775 1.34378 1.51190 1.45907 1.08317 1.08348 1.73012 1.21644 0.79002 0.98167 1.01775 1.20064 0.89128 0.89569 0.93082 0.92633 1.42455 1.71118 1.05506 1.16710 1.19100 1.33452 0.83815 1.00736 0.91184 1.24718 1.01567 0.97665 0.96460 1.69646 1.46697 1.34701 1.06459 0.86352 0.77833 0.85730 0.76744 1.21293 1.21751 1.21246 1.23025 0.96806 0.98164 1.00092 1.22967 1.01157 1.06344 0.92958 1.22785 1.01986 0.95441 0.99090 1.21125 0.93887 0.98164 0.95502 1.20689 0.93802 0.96582 1.00741 1.18969 0.89005 0.92953 0.96286 1.67900 1.08423 1.28716 1.13743 0.90090 0.90180 0.90492 0.84476 0.84055 0.83827 0.75163 0.91417 0.91573 0.78026 0.93378 0.89113 0.89531 0.90078 0.90219 0.87691 0.84149 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.14 36.01 0.37 -0.36 16 2 C 0.16 1.67 6.78 -82.50 -0.56 1.12 16 3 C -0.18 -1.58 9.64 -39.78 -0.38 -1.96 16 4 C -0.04 -0.42 9.89 -39.17 -0.39 -0.81 16 5 C -0.12 -1.52 5.74 -106.82 -0.61 -2.13 16 6 C -0.03 -0.40 9.35 -38.74 -0.36 -0.76 16 7 C -0.13 -1.87 5.87 -104.98 -0.62 -2.49 16 8 C 0.55 9.33 7.77 -12.36 -0.10 9.23 16 9 O -0.55 -10.56 16.31 5.31 0.09 -10.48 16 10 N -0.70 -11.60 5.34 -61.27 -0.33 -11.93 16 11 C 0.12 1.97 5.21 -4.04 -0.02 1.95 16 12 C 0.19 3.47 2.70 -67.93 -0.18 3.29 16 13 H 0.06 1.01 7.84 -51.93 -0.41 0.61 16 14 N -0.72 -15.95 4.54 -53.43 -0.24 -16.19 16 15 C -0.24 -5.96 8.63 -15.06 -0.13 -6.09 16 16 H 0.07 1.70 6.91 -52.49 -0.36 1.34 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 18 N -0.93 -26.32 13.06 55.49 0.72 -25.60 16 19 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 C -0.16 -2.71 5.36 -90.62 -0.49 -3.20 16 24 C -0.20 -2.92 10.18 -26.69 -0.27 -3.19 16 25 C -0.16 -2.72 9.78 -26.69 -0.26 -2.98 16 26 C -0.07 -0.92 9.44 -39.59 -0.37 -1.29 16 27 C -0.10 -1.35 9.95 -39.54 -0.39 -1.74 16 28 C 0.15 2.07 6.61 -84.78 -0.56 1.51 16 29 N -0.48 -6.34 10.23 -7.16 -0.07 -6.41 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.78 7.62 -52.48 -0.40 1.38 16 36 H 0.41 6.73 6.12 -40.82 -0.25 6.48 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.39 9.47 7.80 -40.82 -0.32 9.15 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.09 1.52 8.11 -51.92 -0.42 1.10 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 2.05 6.23 -51.93 -0.32 1.73 16 46 H 0.14 1.87 6.35 -52.48 -0.33 1.54 16 47 H 0.14 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -30.67 393.30 -10.95 -41.61 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -6.59 Total: 17.08 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -5.43 Total: -10.21 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.08 Total: -60.13 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.67 -10.95 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661177620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.050 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds