Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39316 * 119.10989 * 2 1 4 4 C 1.36582 * 119.90193 * 179.97438 * 3 2 1 5 5 C 1.40896 * 118.15831 * 0.02562 * 4 3 2 6 6 C 1.40181 * 121.22177 * 179.97438 * 5 4 3 7 7 C 1.38543 * 119.40301 * 179.97438 * 6 5 4 8 8 C 1.47771 * 119.80559 * 179.97438 * 7 6 5 9 9 O 1.21560 * 119.99712 * 0.04456 * 8 7 6 10 10 N 1.34773 * 119.99736 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47424 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.46820 * 65.00270 * 12 11 10 14 14 N 1.46492 * 109.47149 * 305.00072 * 12 11 10 15 15 C 1.36944 * 119.99788 * 155.00255 * 14 12 11 16 16 H 1.07993 * 120.00235 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99535 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00303 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99616 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46721 * 60.00421 * 19 17 15 21 21 H 1.48497 * 109.47055 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47385 * 300.00472 * 19 17 15 23 23 C 1.53002 * 109.47112 * 184.99593 * 12 11 10 24 24 C 1.52998 * 117.50339 * 248.74992 * 23 12 11 25 25 C 1.53000 * 117.49764 * 180.08571 * 23 12 11 26 26 C 1.40630 * 120.38894 * 0.02562 * 7 6 5 27 27 C 1.35695 * 120.92298 * 359.97438 * 26 7 6 28 28 C 1.40756 * 120.11329 * 0.02562 * 27 26 7 29 29 N 1.31113 * 119.11663 * 179.73155 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00308 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99460 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00178 * 1 2 3 33 33 H 1.07999 * 120.05177 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.92082 * 179.97438 * 4 3 2 35 35 H 1.08009 * 120.29790 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00641 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47059 * 300.00031 * 11 10 8 38 38 H 1.09007 * 109.47351 * 59.99903 * 11 10 8 39 39 H 0.96999 * 120.00405 * 334.99268 * 14 12 11 40 40 H 0.97007 * 120.00122 * 179.97438 * 18 17 15 41 41 H 1.09007 * 115.54654 * 34.42420 * 23 12 11 42 42 H 1.09003 * 117.49897 * 359.97438 * 24 23 12 43 43 H 1.08996 * 117.50082 * 145.02113 * 24 23 12 44 44 H 1.08998 * 117.49868 * 214.97990 * 25 23 12 45 45 H 1.09000 * 117.50146 * 0.02562 * 25 23 12 46 46 H 1.08003 * 119.53615 * 179.97438 * 26 7 6 47 47 H 1.08009 * 119.94602 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2361 0.0005 5 6 4.2325 0.0032 0.0005 6 6 5.6332 -0.0524 0.0005 7 6 6.2650 -1.2854 0.0010 8 6 7.7411 -1.3543 0.0004 9 8 8.3973 -0.3310 0.0003 10 7 8.3598 -2.5517 0.0004 11 6 9.8232 -2.6201 0.0004 12 6 10.2653 -4.0848 0.0010 13 1 9.9545 -4.5584 -0.9302 14 7 9.6481 -4.7807 1.1327 15 6 9.4561 -6.1356 1.0811 16 1 9.7595 -6.6911 0.2060 17 6 8.8717 -6.7951 2.1537 18 7 8.5025 -6.1183 3.2204 19 14 8.6093 -8.6433 2.0830 20 1 9.9188 -9.3230 1.9143 21 1 7.9733 -9.1015 3.3442 22 1 7.7280 -8.9746 0.9347 23 6 11.7884 -4.1577 0.1266 24 6 12.5748 -4.6512 -1.0894 25 6 12.4302 -5.5465 0.1438 26 6 5.5098 -2.4717 0.0010 27 6 4.1534 -2.4348 0.0010 28 6 3.4805 -1.1985 0.0005 29 7 2.1450 -1.1454 0.0054 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6312 2.1445 -0.0004 34 1 4.0926 2.1702 0.0001 35 1 6.2147 0.8579 0.0009 36 1 7.8361 -3.3682 0.0012 37 1 10.2101 -2.1237 -0.8896 38 1 10.2102 -2.1237 0.8904 39 1 9.3754 -4.2819 1.9186 40 1 8.0938 -6.5791 3.9698 41 1 12.2469 -3.3837 0.7423 42 1 12.0071 -4.9244 -1.9789 43 1 13.5508 -4.2023 -1.2737 44 1 13.3111 -5.6861 0.7703 45 1 11.7674 -6.4082 0.0652 46 1 6.0166 -3.4254 0.0010 47 1 3.5890 -3.3557 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661177620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = 32.605627 kcal Electronic energy + Delta-G solvation = -28131.572646 eV Core-core repulsion = 24279.218760 eV Total energy + Delta-G solvation = -3852.353885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00119 -40.78174 -39.06938 -37.95979 -36.15582 -35.21462 -34.54535 -33.27584 -32.53684 -31.14423 -30.04518 -28.71128 -25.77669 -24.97968 -24.63896 -23.38754 -23.06209 -22.99299 -21.82302 -21.06826 -19.56439 -19.06917 -18.80798 -17.58890 -16.98512 -16.86346 -16.67798 -16.28209 -16.03238 -15.73595 -15.49896 -15.43185 -15.24108 -14.91866 -14.78585 -14.50405 -14.44258 -13.97059 -13.89378 -13.64862 -13.10406 -13.00898 -12.96087 -12.90878 -12.67610 -12.49553 -12.40850 -12.28397 -12.22400 -12.02276 -11.72077 -11.62794 -11.21293 -10.99067 -10.86086 -10.75639 -10.52514 -10.12879 -9.73390 -9.33700 -8.99179 -7.87538 -5.15243 -0.82719 -0.37539 0.84605 1.36081 1.50503 1.51291 1.56729 2.14134 2.26497 2.58525 3.02576 3.08561 3.13920 3.48430 3.52413 3.63519 3.64965 3.78356 3.86135 3.95928 4.00097 4.02330 4.17643 4.25083 4.35744 4.38932 4.40232 4.55831 4.66912 4.67872 4.79611 4.81110 4.83817 4.87581 4.91188 4.93901 4.99728 5.14700 5.16833 5.18694 5.19896 5.23590 5.41218 5.43827 5.49302 5.52818 5.62759 5.74321 6.31465 6.50721 6.89606 7.12530 7.40199 8.10924 8.36500 9.34759 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012094 B = 0.002758 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.586893 B =10148.569278 C =12045.353952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.171 4.171 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.020 4.020 7 C -0.150 4.150 8 C 0.556 3.444 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.127 3.873 12 C 0.196 3.804 13 H 0.059 0.941 14 N -0.723 5.723 15 C -0.218 4.218 16 H 0.077 0.923 17 C -0.068 4.068 18 N -0.965 5.965 19 Si 0.958 3.042 20 H -0.283 1.283 21 H -0.304 1.304 22 H -0.278 1.278 23 C -0.173 4.173 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.071 4.071 27 C -0.110 4.110 28 C 0.133 3.867 29 N -0.514 5.514 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.410 0.590 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.372 0.628 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.082 15.286 -10.105 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.006 3.994 3 C -0.190 4.190 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.039 4.039 7 C -0.153 4.153 8 C 0.344 3.656 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.002 3.998 12 C 0.087 3.913 13 H 0.077 0.923 14 N -0.363 5.363 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.616 5.616 19 Si 0.788 3.212 20 H -0.210 1.210 21 H -0.231 1.231 22 H -0.204 1.204 23 C -0.194 4.194 24 C -0.199 4.199 25 C -0.212 4.212 26 C -0.091 4.091 27 C -0.128 4.128 28 C 0.012 3.988 29 N -0.224 5.224 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.248 0.752 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.205 0.795 40 H 0.056 0.944 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.155 0.845 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.990 14.924 -10.167 21.139 hybrid contribution 0.372 -1.019 0.892 1.405 sum -10.617 13.905 -9.275 19.802 Atomic orbital electron populations 1.20935 0.86090 1.04812 1.04485 1.22331 0.99003 0.88229 0.89813 1.22156 0.94752 1.00232 1.01896 1.21954 0.95222 0.97183 0.92632 1.18980 0.94042 0.95370 1.05362 1.21545 0.92754 0.97713 0.91931 1.19898 0.92332 0.95031 1.08082 1.18413 0.87820 0.83380 0.75959 1.90704 1.67562 1.35049 1.52743 1.45907 1.08264 1.08423 1.72920 1.21549 0.79193 0.97079 1.01932 1.20165 0.89783 0.89898 0.91447 0.92324 1.42556 1.71545 1.04824 1.17338 1.19395 1.30617 0.84913 1.00095 0.90518 1.25340 1.03017 1.00965 0.96737 1.69797 1.48975 1.35702 1.07146 0.85448 0.77620 0.81942 0.76156 1.21004 1.23068 1.20411 1.22917 0.95875 0.98183 1.02431 1.23039 1.01757 1.03273 0.91853 1.22740 1.02055 0.94715 1.01694 1.21041 0.94064 0.97835 0.96175 1.20784 0.93705 0.97207 1.01133 1.19149 0.89765 0.93327 0.96586 1.67945 1.08120 1.30570 1.15769 0.88647 0.91033 0.87522 0.80248 0.80945 0.82944 0.75214 0.89805 0.92749 0.79545 0.94435 0.88757 0.88556 0.87513 0.89641 0.90085 0.84505 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.14 71.24 0.72 -0.40 16 2 C 0.16 2.92 6.78 42.93 0.29 3.21 16 3 C -0.17 -2.37 9.64 22.14 0.21 -2.16 16 4 C -0.04 -0.75 9.89 22.53 0.22 -0.53 16 5 C -0.14 -3.33 5.74 -21.29 -0.12 -3.45 16 6 C -0.02 -0.52 9.35 22.81 0.21 -0.31 16 7 C -0.15 -4.58 5.87 -20.10 -0.12 -4.70 16 8 C 0.56 19.17 7.77 86.77 0.67 19.84 16 9 O -0.58 -22.45 16.31 -3.90 -0.06 -22.51 16 10 N -0.70 -23.77 5.34 -466.04 -2.49 -26.26 16 11 C 0.13 4.22 5.21 86.38 0.45 4.67 16 12 C 0.20 7.01 2.70 44.99 0.12 7.13 16 13 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 14 N -0.72 -32.69 4.54 -322.96 -1.47 -34.16 16 15 C -0.22 -10.94 8.63 84.03 0.73 -10.21 16 16 H 0.08 3.70 6.91 -2.91 -0.02 3.68 16 17 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.97 -56.55 13.06 21.65 0.28 -56.27 16 19 Si 0.96 44.44 29.55 68.60 2.03 46.46 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 C -0.17 -5.69 5.36 -10.79 -0.06 -5.74 16 24 C -0.16 -4.37 10.18 30.62 0.31 -4.06 16 25 C -0.17 -5.91 9.78 30.62 0.30 -5.61 16 26 C -0.07 -2.07 9.44 22.26 0.21 -1.86 16 27 C -0.11 -3.12 9.95 22.30 0.22 -2.89 16 28 C 0.13 3.70 6.61 40.35 0.27 3.97 16 29 N -0.51 -13.35 10.23 -176.58 -1.81 -15.15 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.51 8.07 -2.39 -0.02 0.49 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.15 3.68 7.62 -2.91 -0.02 3.66 16 36 H 0.41 13.96 6.12 -92.71 -0.57 13.40 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.37 18.86 7.80 -92.71 -0.72 18.13 16 40 H 0.25 14.38 8.31 -92.70 -0.77 13.60 16 41 H 0.09 3.05 8.11 -2.38 -0.02 3.03 16 42 H 0.10 2.45 8.05 -2.39 -0.02 2.43 16 43 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.08 3.13 6.23 -2.39 -0.01 3.12 16 46 H 0.14 3.94 6.35 -2.91 -0.02 3.92 16 47 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -68.07 393.30 1.32 -66.75 By element: Atomic # 1 Polarization: 47.73 SS G_CDS: -0.28 Total: 47.45 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.11 Total: -6.31 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -5.48 Total: -131.84 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.07 1.32 -66.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661177620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.353 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds