Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39312 * 119.11511 * 2 1 4 4 C 1.36579 * 119.90208 * 180.02562 * 3 2 1 5 5 C 1.40885 * 118.16269 * 359.97438 * 4 3 2 6 6 C 1.40186 * 121.23077 * 180.29474 * 5 4 3 7 7 C 1.38552 * 119.40169 * 180.25811 * 6 5 4 8 8 C 1.47766 * 119.79993 * 179.73786 * 7 6 5 9 9 O 1.21563 * 120.00216 * 359.72978 * 8 7 6 10 10 N 1.34777 * 119.99501 * 179.72674 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72380 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08992 * 109.46993 * 295.00086 * 12 11 10 14 14 N 1.46506 * 109.46943 * 54.99919 * 12 11 10 15 15 C 1.36929 * 119.99909 * 205.00011 * 14 12 11 16 16 H 1.08006 * 120.00094 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48503 * 109.46884 * 210.00261 * 19 17 15 22 22 H 1.48502 * 109.47201 * 329.99762 * 19 17 15 23 23 C 1.52995 * 109.47195 * 174.99817 * 12 11 10 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 12 11 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 12 11 26 26 C 1.40632 * 120.39338 * 359.46256 * 7 6 5 27 27 C 1.35702 * 120.91504 * 0.25364 * 26 7 6 28 28 C 1.40749 * 120.11744 * 0.02562 * 27 26 7 29 29 N 1.31123 * 119.11175 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46816 * 89.99823 * 1 2 3 31 31 H 1.08996 * 109.47097 * 209.99930 * 1 2 3 32 32 H 1.08995 * 109.47131 * 330.00033 * 1 2 3 33 33 H 1.07999 * 120.04817 * 0.04563 * 3 2 1 34 34 H 1.08004 * 120.91702 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.29543 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 0.97002 * 119.99781 * 25.00223 * 14 12 11 40 40 H 0.96996 * 119.99816 * 180.02562 * 18 17 15 41 41 H 1.09006 * 115.55266 * 34.42181 * 23 12 11 42 42 H 1.08993 * 117.49781 * 359.97438 * 24 23 12 43 43 H 1.09000 * 117.50138 * 145.02405 * 24 23 12 44 44 H 1.09009 * 117.50018 * 214.98040 * 25 23 12 45 45 H 1.08999 * 117.50301 * 359.97438 * 25 23 12 46 46 H 1.07999 * 119.54057 * 180.27256 * 26 7 6 47 47 H 1.08004 * 119.93617 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0005 6 6 5.6332 -0.0528 0.0051 7 6 6.2649 -1.2859 -0.0005 8 6 7.7409 -1.3550 -0.0005 9 8 8.3973 -0.3318 -0.0005 10 7 8.3594 -2.5524 -0.0004 11 6 9.8228 -2.6209 -0.0065 12 6 10.2648 -4.0857 -0.0120 13 1 9.9577 -4.5614 0.9193 14 7 9.6428 -4.7792 -1.1428 15 6 9.4509 -6.1341 -1.0933 16 1 9.7577 -6.6915 -0.2205 17 6 8.8620 -6.7913 -2.1649 18 7 8.4886 -6.1121 -3.2286 19 14 8.5995 -8.6395 -2.0971 20 1 7.2675 -8.9290 -1.5081 21 1 8.6657 -9.1996 -3.4708 22 1 9.6569 -9.2592 -1.2584 23 6 11.7873 -4.1585 -0.1442 24 6 12.3573 -4.7120 -1.4517 25 6 12.4284 -5.5475 -0.1709 26 6 5.5096 -2.4722 -0.0004 27 6 4.1531 -2.4350 0.0001 28 6 3.4804 -1.1987 -0.0001 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6313 2.1444 0.0007 34 1 4.0927 2.1700 -0.0001 35 1 6.2147 0.8573 0.0100 36 1 7.8357 -3.3689 -0.0007 37 1 10.2062 -2.1224 -0.8968 38 1 10.2134 -2.1270 0.8832 39 1 9.3669 -4.2785 -1.9264 40 1 8.0767 -6.5713 -3.9772 41 1 12.3407 -3.3582 0.3472 42 1 11.6477 -5.0247 -2.2176 43 1 13.2859 -4.2762 -1.8203 44 1 13.4038 -5.6608 0.3024 45 1 11.7656 -6.4094 -0.0940 46 1 6.0162 -3.4260 -0.0003 47 1 3.5887 -3.3559 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661177621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = 53.508815 kcal Electronic energy + Delta-G solvation = -28256.110712 eV Core-core repulsion = 24404.663257 eV Total energy + Delta-G solvation = -3851.447455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05957 -39.53010 -37.73522 -36.91824 -34.60147 -33.69526 -33.28458 -32.29454 -30.84835 -30.18340 -28.76938 -27.62902 -24.23873 -24.00893 -23.35183 -22.39838 -22.05357 -21.50128 -20.52477 -19.24230 -18.19661 -17.95914 -17.19217 -16.56778 -15.99588 -15.50375 -15.30556 -14.97095 -14.73621 -14.55717 -14.50324 -14.03749 -13.95744 -13.62435 -13.52223 -13.29501 -13.16734 -13.03146 -12.89252 -12.47838 -12.16480 -12.11343 -11.54641 -11.40035 -11.24597 -11.18984 -10.91543 -10.86656 -10.75246 -10.54295 -10.14624 -9.84147 -9.69403 -9.66808 -9.47435 -9.19127 -9.01446 -8.89439 -8.68527 -8.33046 -7.10574 -5.86582 -3.17157 0.11333 0.54979 1.78647 2.38730 3.36115 3.37438 3.43369 3.44954 3.45648 3.95412 4.01059 4.35925 4.47075 4.48115 4.59999 4.61129 4.77484 4.88945 5.03318 5.09249 5.17929 5.26419 5.29810 5.34699 5.43948 5.54610 5.61270 5.69172 5.70795 5.73129 5.82548 5.86108 5.90667 5.95317 6.02051 6.04794 6.19718 6.23459 6.35401 6.37215 6.42733 6.61926 6.65007 6.71096 6.85322 6.98535 7.26078 7.62863 7.74758 7.85415 8.30161 8.46517 9.42748 9.95929 10.32286 11.34609 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.002756 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.035350 B =10156.871397 C =11976.169109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.120 4.120 6 C -0.030 4.030 7 C -0.127 4.127 8 C 0.554 3.446 9 O -0.551 6.551 10 N -0.704 5.704 11 C 0.119 3.881 12 C 0.191 3.809 13 H 0.058 0.942 14 N -0.718 5.718 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.927 5.927 19 Si 0.902 3.098 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.178 4.178 24 C -0.163 4.163 25 C -0.176 4.176 26 C -0.066 4.066 27 C -0.100 4.100 28 C 0.149 3.851 29 N -0.478 5.478 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.410 0.590 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.141 0.859 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.305 13.355 7.892 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.050 4.050 7 C -0.130 4.130 8 C 0.341 3.659 9 O -0.431 6.431 10 N -0.356 5.356 11 C -0.006 4.006 12 C 0.080 3.920 13 H 0.076 0.924 14 N -0.360 5.360 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.733 3.267 20 H -0.217 1.217 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.199 4.199 24 C -0.200 4.200 25 C -0.213 4.213 26 C -0.087 4.087 27 C -0.118 4.118 28 C 0.028 3.972 29 N -0.188 5.188 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.248 0.752 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.121 0.879 46 H 0.158 0.842 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.214 12.996 7.921 18.330 hybrid contribution 0.186 -0.561 -0.412 0.720 sum -10.028 12.436 7.509 17.652 Atomic orbital electron populations 1.20795 0.88615 1.03670 1.03374 1.21552 0.97201 0.88262 0.92083 1.21686 0.94977 0.99241 1.04154 1.21539 0.94477 0.97268 0.93635 1.18780 0.94389 0.94275 1.04732 1.21396 0.92172 0.98029 0.93358 1.20025 0.93609 0.94023 1.05316 1.18136 0.86976 0.83916 0.76869 1.90737 1.66766 1.34398 1.51195 1.45917 1.08336 1.08322 1.72994 1.21629 0.78957 0.98263 1.01714 1.20005 0.89546 0.89425 0.93000 0.92433 1.42484 1.71155 1.05503 1.16812 1.19151 1.33366 0.83734 1.00982 0.91056 1.24710 1.01461 0.97648 0.96522 1.69653 1.46520 1.34599 1.06642 0.86278 0.77917 0.85746 0.76748 1.21731 1.21874 1.20786 1.23059 0.97605 0.96534 1.02741 1.22914 1.01342 1.03270 0.92458 1.22857 1.00579 0.95457 1.02364 1.21124 0.93880 0.98158 0.95500 1.20688 0.93809 0.96578 1.00747 1.18967 0.89006 0.92952 0.96287 1.67903 1.08426 1.28707 1.13751 0.90041 0.90215 0.90511 0.84476 0.84057 0.83835 0.75182 0.91456 0.91624 0.77909 0.93412 0.89605 0.86330 0.91286 0.91027 0.87904 0.84154 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.14 36.01 0.37 -0.36 16 2 C 0.16 1.68 6.78 -82.49 -0.56 1.12 16 3 C -0.18 -1.58 9.64 -39.78 -0.38 -1.96 16 4 C -0.04 -0.42 9.89 -39.18 -0.39 -0.81 16 5 C -0.12 -1.52 5.74 -106.82 -0.61 -2.13 16 6 C -0.03 -0.40 9.35 -38.73 -0.36 -0.76 16 7 C -0.13 -1.87 5.87 -104.98 -0.62 -2.48 16 8 C 0.55 9.31 7.77 -12.37 -0.10 9.21 16 9 O -0.55 -10.57 16.31 5.31 0.09 -10.48 16 10 N -0.70 -11.53 5.34 -61.27 -0.33 -11.85 16 11 C 0.12 1.97 5.22 -4.04 -0.02 1.95 16 12 C 0.19 3.42 2.86 -67.93 -0.19 3.22 16 13 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 14 N -0.72 -15.54 3.08 -53.42 -0.16 -15.70 16 15 C -0.24 -5.87 8.15 -15.06 -0.12 -5.99 16 16 H 0.07 1.72 6.91 -52.48 -0.36 1.36 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -25.83 13.06 55.49 0.72 -25.10 16 19 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.18 -3.04 5.70 -90.62 -0.52 -3.55 16 24 C -0.16 -3.00 9.74 -26.69 -0.26 -3.26 16 25 C -0.18 -3.09 9.87 -26.69 -0.26 -3.35 16 26 C -0.07 -0.92 9.44 -39.59 -0.37 -1.29 16 27 C -0.10 -1.35 9.95 -39.54 -0.39 -1.74 16 28 C 0.15 2.07 6.61 -84.78 -0.56 1.51 16 29 N -0.48 -6.34 10.23 -7.16 -0.07 -6.42 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.14 1.78 7.62 -52.49 -0.40 1.38 16 36 H 0.41 6.67 6.12 -40.82 -0.25 6.42 16 37 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.39 9.26 7.80 -40.82 -0.32 8.95 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 42 H 0.12 2.62 6.68 -51.93 -0.35 2.28 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 45 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 46 H 0.14 1.87 6.35 -52.49 -0.33 1.53 16 47 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -29.87 390.39 -10.88 -40.76 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -6.53 Total: 17.84 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -5.45 Total: -10.97 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.16 Total: -59.07 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.87 -10.88 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661177621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.266 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds