Wall clock time and date at job start Tue Mar 31 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39312 * 119.11511 * 2 1 4 4 C 1.36579 * 119.90208 * 180.02562 * 3 2 1 5 5 C 1.40885 * 118.16269 * 359.97438 * 4 3 2 6 6 C 1.40186 * 121.23077 * 180.29474 * 5 4 3 7 7 C 1.38552 * 119.40169 * 180.25811 * 6 5 4 8 8 C 1.47766 * 119.79993 * 179.73786 * 7 6 5 9 9 O 1.21563 * 120.00216 * 359.72978 * 8 7 6 10 10 N 1.34777 * 119.99501 * 179.72674 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72380 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08992 * 109.46993 * 295.00086 * 12 11 10 14 14 N 1.46506 * 109.46943 * 54.99919 * 12 11 10 15 15 C 1.36929 * 119.99909 * 205.00011 * 14 12 11 16 16 H 1.08006 * 120.00094 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00176 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47137 * 90.00133 * 19 17 15 21 21 H 1.48503 * 109.46884 * 210.00261 * 19 17 15 22 22 H 1.48502 * 109.47201 * 329.99762 * 19 17 15 23 23 C 1.52995 * 109.47195 * 174.99817 * 12 11 10 24 24 C 1.52999 * 117.50225 * 248.74775 * 23 12 11 25 25 C 1.52999 * 117.49761 * 180.08552 * 23 12 11 26 26 C 1.40632 * 120.39338 * 359.46256 * 7 6 5 27 27 C 1.35702 * 120.91504 * 0.25364 * 26 7 6 28 28 C 1.40749 * 120.11744 * 0.02562 * 27 26 7 29 29 N 1.31123 * 119.11175 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46816 * 89.99823 * 1 2 3 31 31 H 1.08996 * 109.47097 * 209.99930 * 1 2 3 32 32 H 1.08995 * 109.47131 * 330.00033 * 1 2 3 33 33 H 1.07999 * 120.04817 * 0.04563 * 3 2 1 34 34 H 1.08004 * 120.91702 * 180.02562 * 4 3 2 35 35 H 1.07998 * 120.29543 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 37 37 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 38 38 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 39 39 H 0.97002 * 119.99781 * 25.00223 * 14 12 11 40 40 H 0.96996 * 119.99816 * 180.02562 * 18 17 15 41 41 H 1.09006 * 115.55266 * 34.42181 * 23 12 11 42 42 H 1.08993 * 117.49781 * 359.97438 * 24 23 12 43 43 H 1.09000 * 117.50138 * 145.02405 * 24 23 12 44 44 H 1.09009 * 117.50018 * 214.98040 * 25 23 12 45 45 H 1.08999 * 117.50301 * 359.97438 * 25 23 12 46 46 H 1.07999 * 119.54057 * 180.27256 * 26 7 6 47 47 H 1.08004 * 119.93617 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0005 6 6 5.6332 -0.0528 0.0051 7 6 6.2649 -1.2859 -0.0005 8 6 7.7409 -1.3550 -0.0005 9 8 8.3973 -0.3318 -0.0005 10 7 8.3594 -2.5524 -0.0004 11 6 9.8228 -2.6209 -0.0065 12 6 10.2648 -4.0857 -0.0120 13 1 9.9577 -4.5614 0.9193 14 7 9.6428 -4.7792 -1.1428 15 6 9.4509 -6.1341 -1.0933 16 1 9.7577 -6.6915 -0.2205 17 6 8.8620 -6.7913 -2.1649 18 7 8.4886 -6.1121 -3.2286 19 14 8.5995 -8.6395 -2.0971 20 1 7.2675 -8.9290 -1.5081 21 1 8.6657 -9.1996 -3.4708 22 1 9.6569 -9.2592 -1.2584 23 6 11.7873 -4.1585 -0.1442 24 6 12.3573 -4.7120 -1.4517 25 6 12.4284 -5.5475 -0.1709 26 6 5.5096 -2.4722 -0.0004 27 6 4.1531 -2.4350 0.0001 28 6 3.4804 -1.1987 -0.0001 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6313 2.1444 0.0007 34 1 4.0927 2.1700 -0.0001 35 1 6.2147 0.8573 0.0100 36 1 7.8357 -3.3689 -0.0007 37 1 10.2062 -2.1224 -0.8968 38 1 10.2134 -2.1270 0.8832 39 1 9.3669 -4.2785 -1.9264 40 1 8.0767 -6.5713 -3.9772 41 1 12.3407 -3.3582 0.3472 42 1 11.6477 -5.0247 -2.2176 43 1 13.2859 -4.2762 -1.8203 44 1 13.4038 -5.6608 0.3024 45 1 11.7656 -6.4094 -0.0940 46 1 6.0162 -3.4260 -0.0003 47 1 3.5887 -3.3559 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661177621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:06 Heat of formation + Delta-G solvation = 36.707489 kcal Electronic energy + Delta-G solvation = -28256.839273 eV Core-core repulsion = 24404.663257 eV Total energy + Delta-G solvation = -3852.176015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99970 -40.78224 -39.19336 -37.96138 -35.99182 -35.09598 -34.54743 -33.26047 -32.44626 -31.14304 -30.10904 -28.74403 -25.75321 -25.00889 -24.76148 -23.53770 -23.08166 -22.90776 -21.76535 -20.66834 -19.48463 -19.07461 -18.82774 -17.58805 -17.06699 -16.73359 -16.71861 -16.29848 -16.16969 -15.70651 -15.53176 -15.44160 -15.26357 -14.83651 -14.64018 -14.50983 -14.46226 -13.94669 -13.89745 -13.65951 -13.10206 -13.00798 -12.95023 -12.86118 -12.66897 -12.60937 -12.44398 -12.26075 -12.12029 -11.94676 -11.62835 -11.58764 -11.18547 -11.02475 -10.81857 -10.61028 -10.52563 -10.11609 -9.73226 -9.33532 -8.98856 -7.87624 -5.15155 -0.82648 -0.37482 0.84682 1.36336 1.49130 1.51301 1.57233 2.15075 2.27177 2.58849 3.02755 3.13904 3.14309 3.47054 3.52374 3.63637 3.65168 3.85277 3.87841 3.96222 3.99449 4.02393 4.24616 4.28750 4.34615 4.39075 4.50688 4.58480 4.65346 4.68377 4.79828 4.81616 4.85027 4.92931 4.94321 4.97927 4.99886 5.18246 5.19053 5.19987 5.23231 5.25083 5.41182 5.48883 5.53983 5.67767 5.69724 5.74338 6.32014 6.51676 6.89561 7.13493 7.40842 8.11230 8.36769 9.34513 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012823 B = 0.002756 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.035350 B =10156.871397 C =11976.169109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.171 4.171 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.020 4.020 7 C -0.150 4.150 8 C 0.556 3.444 9 O -0.578 6.578 10 N -0.704 5.704 11 C 0.127 3.873 12 C 0.191 3.809 13 H 0.062 0.938 14 N -0.720 5.720 15 C -0.217 4.217 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.963 5.963 19 Si 0.955 3.045 20 H -0.290 1.290 21 H -0.306 1.306 22 H -0.273 1.273 23 C -0.167 4.167 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.070 4.070 27 C -0.110 4.110 28 C 0.133 3.867 29 N -0.514 5.514 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.410 0.590 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.246 0.754 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 15.392 9.460 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.006 3.994 3 C -0.190 4.190 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.040 4.040 7 C -0.153 4.153 8 C 0.344 3.656 9 O -0.461 6.461 10 N -0.355 5.355 11 C 0.003 3.997 12 C 0.082 3.918 13 H 0.080 0.920 14 N -0.360 5.360 15 C -0.348 4.348 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.614 5.614 19 Si 0.786 3.214 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.198 1.198 23 C -0.189 4.189 24 C -0.211 4.211 25 C -0.208 4.208 26 C -0.091 4.091 27 C -0.129 4.129 28 C 0.012 3.988 29 N -0.224 5.224 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.198 0.802 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.248 0.752 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.206 0.794 40 H 0.055 0.945 41 H 0.134 0.866 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.155 0.845 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.887 15.026 9.543 20.866 hybrid contribution 0.282 -1.058 -0.836 1.378 sum -10.605 13.967 8.707 19.580 Atomic orbital electron populations 1.20933 0.86097 1.04897 1.04394 1.22331 0.99000 0.88233 0.89827 1.22154 0.94756 1.00228 1.01903 1.21952 0.95221 0.97190 0.92631 1.18981 0.94056 0.95359 1.05358 1.21547 0.92743 0.97724 0.91948 1.19905 0.92382 0.95005 1.08037 1.18404 0.87790 0.83407 0.75975 1.90705 1.67541 1.35073 1.52753 1.45911 1.08303 1.08385 1.72882 1.21538 0.79159 0.97089 1.01938 1.20150 0.90191 0.89899 0.91555 0.92015 1.42532 1.71376 1.04740 1.17384 1.19394 1.30429 0.84857 1.00169 0.90579 1.25284 1.02982 1.00672 0.96831 1.69793 1.48780 1.35500 1.07304 0.85415 0.77824 0.82316 0.75842 1.21789 1.23319 1.19829 1.23049 0.96735 0.97295 1.01786 1.22773 1.01577 1.04661 0.92064 1.22848 1.01570 0.94631 1.01704 1.21043 0.94043 0.97845 0.96147 1.20783 0.93730 0.97189 1.01166 1.19148 0.89762 0.93333 0.96596 1.67947 1.08134 1.30565 1.15772 0.88911 0.90905 0.87402 0.80249 0.80943 0.82948 0.75220 0.92718 0.89769 0.79375 0.94479 0.86557 0.90452 0.89121 0.88058 0.90321 0.84490 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.14 71.24 0.72 -0.41 16 2 C 0.16 2.92 6.78 42.92 0.29 3.21 16 3 C -0.17 -2.37 9.64 22.14 0.21 -2.16 16 4 C -0.04 -0.75 9.89 22.53 0.22 -0.53 16 5 C -0.14 -3.33 5.74 -21.29 -0.12 -3.45 16 6 C -0.02 -0.53 9.35 22.82 0.21 -0.31 16 7 C -0.15 -4.56 5.87 -20.10 -0.12 -4.68 16 8 C 0.56 19.03 7.77 86.76 0.67 19.70 16 9 O -0.58 -22.32 16.31 -3.91 -0.06 -22.38 16 10 N -0.70 -23.45 5.34 -466.03 -2.49 -25.94 16 11 C 0.13 4.15 5.22 86.38 0.45 4.60 16 12 C 0.19 6.72 2.86 44.99 0.13 6.85 16 13 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 14 N -0.72 -31.71 3.08 -322.94 -0.99 -32.70 16 15 C -0.22 -10.66 8.15 84.04 0.69 -9.97 16 16 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 17 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 18 N -0.96 -55.67 13.06 21.65 0.28 -55.38 16 19 Si 0.95 44.28 29.55 68.60 2.03 46.30 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 C -0.17 -5.41 5.70 -10.80 -0.06 -5.47 16 24 C -0.17 -6.26 9.74 30.62 0.30 -5.96 16 25 C -0.17 -5.69 9.87 30.62 0.30 -5.39 16 26 C -0.07 -2.06 9.44 22.27 0.21 -1.85 16 27 C -0.11 -3.13 9.95 22.30 0.22 -2.90 16 28 C 0.13 3.70 6.61 40.35 0.27 3.97 16 29 N -0.51 -13.37 10.23 -176.58 -1.81 -15.17 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.49 8.07 -2.39 -0.02 0.47 16 33 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.15 3.67 7.62 -2.91 -0.02 3.65 16 36 H 0.41 13.78 6.12 -92.71 -0.57 13.21 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.37 18.54 7.80 -92.71 -0.72 17.82 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.12 3.13 8.11 -2.38 -0.02 3.11 16 42 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 43 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 45 H 0.08 3.02 6.22 -2.39 -0.01 3.01 16 46 H 0.14 3.92 6.35 -2.91 -0.02 3.91 16 47 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -66.90 390.39 1.75 -65.15 By element: Atomic # 1 Polarization: 48.15 SS G_CDS: -0.28 Total: 47.87 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.07 Total: -7.75 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -5.00 Total: -129.20 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.90 1.75 -65.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661177621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.861 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds