Wall clock time and date at job start Tue Mar 31 2020 22:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36353 * 119.96331 * 2 1 4 4 C 1.38856 * 121.06615 * 179.97438 * 3 2 1 5 5 C 1.38744 * 120.72593 * 0.02562 * 4 3 2 6 6 C 1.47427 * 120.33739 * 180.02562 * 5 4 3 7 7 O 1.21599 * 120.00212 * 135.64373 * 6 5 4 8 8 N 1.34781 * 120.00146 * 315.64023 * 6 5 4 9 9 C 1.47019 * 125.64411 * 354.74201 * 8 6 5 10 10 C 1.54330 * 107.26694 * 181.02043 * 9 8 6 11 11 C 1.55150 * 102.94539 * 22.19395 * 10 9 8 12 12 H 1.08996 * 111.04045 * 82.58077 * 11 10 9 13 13 C 1.53002 * 111.00770 * 206.42431 * 11 10 9 14 14 N 1.46492 * 109.47181 * 178.64499 * 13 11 10 15 15 C 1.36943 * 119.99606 * 179.97438 * 14 13 11 16 16 H 1.07995 * 120.00288 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00288 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99826 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47317 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47020 * 300.00368 * 19 17 15 22 22 H 1.48500 * 109.47152 * 59.99910 * 19 17 15 23 23 C 1.47418 * 125.64993 * 174.69359 * 8 6 5 24 24 C 1.41775 * 119.32942 * 0.28083 * 5 4 3 25 25 N 1.33358 * 121.04430 * 180.27742 * 24 5 4 26 26 C 1.31230 * 121.35347 * 179.67543 * 25 24 5 27 27 C 1.39234 * 121.69261 * 359.74623 * 26 25 24 28 28 C 1.36630 * 119.91126 * 359.97438 * 27 26 25 29 29 C 1.40441 * 119.95912 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47063 * 89.99749 * 1 2 3 31 31 H 1.09001 * 109.46933 * 210.00322 * 1 2 3 32 32 H 1.08999 * 109.46735 * 330.00073 * 1 2 3 33 33 H 1.08006 * 119.46351 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.64105 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.88601 * 300.43549 * 9 8 6 36 36 H 1.08998 * 109.88471 * 61.45331 * 9 8 6 37 37 H 1.08999 * 110.72008 * 263.82068 * 10 9 8 38 38 H 1.09003 * 110.71758 * 140.55823 * 10 9 8 39 39 H 1.09007 * 109.46671 * 58.64531 * 13 11 10 40 40 H 1.08994 * 109.46603 * 298.64991 * 13 11 10 41 41 H 0.96998 * 120.00355 * 359.97438 * 14 13 11 42 42 H 0.96997 * 119.99798 * 0.02562 * 18 17 15 43 43 H 1.09000 * 110.36808 * 37.07637 * 23 8 6 44 44 H 1.09002 * 110.46207 * 274.79828 * 23 8 6 45 45 H 1.07995 * 119.15472 * 179.72336 * 26 25 24 46 46 H 1.08004 * 120.04120 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.91733 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5763 1.2080 0.0005 5 6 4.3080 0.0292 0.0005 6 6 5.7818 0.0676 0.0017 7 8 6.4087 -0.6696 0.7380 8 7 6.4344 0.9197 -0.8135 9 6 5.8106 1.7835 -1.8265 10 6 6.9451 2.5592 -2.5286 11 6 8.1899 1.6728 -2.2604 12 1 8.2499 0.8549 -2.9783 13 6 9.4717 2.5080 -2.2766 14 7 10.6202 1.6455 -1.9883 15 6 11.8822 2.1759 -1.9499 16 1 12.0307 3.2300 -2.1317 17 6 12.9705 1.3585 -1.6774 18 7 12.7895 0.0739 -1.4553 19 14 14.6919 2.0821 -1.6243 20 1 15.6707 1.0089 -1.3151 21 1 15.0166 2.6843 -2.9423 22 1 14.7568 3.1285 -0.5726 23 6 7.8917 1.1408 -0.8363 24 6 3.6241 -1.2127 -0.0060 25 7 4.2932 -2.3663 -0.0007 26 6 3.6663 -3.5192 -0.0004 27 6 2.2761 -3.5959 -0.0004 28 6 1.5305 -2.4509 -0.0001 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6386 2.1112 -0.0004 34 1 4.0923 2.1569 0.0009 35 1 5.2732 1.1742 -2.5533 36 1 5.1234 2.4806 -1.3470 37 1 7.0708 3.5459 -2.0830 38 1 6.7524 2.6399 -3.5985 39 1 9.4055 3.2898 -1.5198 40 1 9.5964 2.9630 -3.2591 41 1 10.4869 0.6988 -1.8247 42 1 11.8956 -0.3018 -1.4825 43 1 8.4204 0.2034 -0.6633 44 1 8.1768 1.8801 -0.0878 45 1 4.2436 -4.4319 -0.0006 46 1 1.7877 -4.5592 -0.0006 47 1 0.4513 -2.4915 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662661301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:41 Heat of formation + Delta-G solvation = 11.915594 kcal Electronic energy + Delta-G solvation = -28607.184205 eV Core-core repulsion = 24753.933132 eV Total energy + Delta-G solvation = -3853.251072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18620 -40.95295 -38.89450 -38.25756 -36.76461 -35.22385 -34.03356 -32.33410 -31.77329 -31.64670 -30.07666 -28.63138 -26.75524 -25.47430 -25.18323 -24.63870 -23.79624 -22.51087 -21.47633 -20.56657 -19.43829 -19.27322 -18.49040 -18.18200 -17.47733 -17.20419 -16.44511 -16.28395 -15.89714 -15.74500 -15.63000 -15.37143 -15.17008 -15.11332 -14.67894 -14.44478 -14.27166 -14.13146 -13.96468 -13.89479 -13.59031 -13.15253 -13.06523 -12.84256 -12.79407 -12.57454 -12.47950 -12.29355 -12.11440 -12.00960 -11.87380 -11.70671 -11.45541 -11.25890 -11.19108 -10.95359 -10.36383 -9.87125 -9.80092 -9.18822 -9.15208 -8.43250 -5.37384 -0.85276 -0.22969 0.71663 1.55984 1.57495 1.67555 1.78014 1.83551 2.02199 2.70336 3.02290 3.18871 3.27036 3.37737 3.48349 3.54289 3.65472 3.73847 3.77918 3.84435 3.90875 3.98911 4.02143 4.16910 4.30298 4.34271 4.38623 4.44837 4.52035 4.56375 4.68838 4.72318 4.74320 4.82782 4.85141 4.88956 4.93794 4.97841 5.04107 5.08529 5.13859 5.17899 5.22961 5.30781 5.40715 5.55014 5.55597 5.80447 6.38350 6.43730 6.96007 7.03315 7.05095 7.94924 8.07740 9.08339 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002348 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.816618 B =11921.922270 C =12921.477910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 C -0.131 4.131 4 C -0.043 4.043 5 C -0.149 4.149 6 C 0.570 3.430 7 O -0.574 6.574 8 N -0.617 5.617 9 C 0.097 3.903 10 C -0.108 4.108 11 C -0.098 4.098 12 H 0.070 0.930 13 C 0.171 3.829 14 N -0.762 5.762 15 C -0.333 4.333 16 H 0.073 0.927 17 C -0.111 4.111 18 N -0.978 5.978 19 Si 1.132 2.868 20 H -0.295 1.295 21 H -0.272 1.272 22 H -0.276 1.276 23 C 0.122 3.878 24 C 0.134 3.866 25 N -0.522 5.522 26 C 0.121 3.879 27 C -0.174 4.174 28 C -0.048 4.048 29 C -0.124 4.124 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.175 0.825 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.356 0.644 42 H 0.240 0.760 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.169 0.831 46 H 0.178 0.822 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.681 2.729 -0.669 36.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.029 4.029 3 C -0.149 4.149 4 C -0.063 4.063 5 C -0.153 4.153 6 C 0.361 3.639 7 O -0.454 6.454 8 N -0.350 5.350 9 C -0.024 4.024 10 C -0.146 4.146 11 C -0.118 4.118 12 H 0.088 0.912 13 C 0.044 3.956 14 N -0.406 5.406 15 C -0.465 4.465 16 H 0.091 0.909 17 C -0.302 4.302 18 N -0.626 5.626 19 Si 0.956 3.044 20 H -0.222 1.222 21 H -0.198 1.198 22 H -0.202 1.202 23 C -0.001 4.001 24 C 0.012 3.988 25 N -0.231 5.231 26 C -0.050 4.050 27 C -0.194 4.194 28 C -0.074 4.074 29 C -0.127 4.127 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.193 0.807 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.188 0.812 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.186 0.814 46 H 0.195 0.805 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -33.850 2.359 -0.044 33.932 hybrid contribution -1.367 -0.736 0.086 1.555 sum -35.217 1.623 0.042 35.254 Atomic orbital electron populations 1.21057 0.87052 1.05086 1.04462 1.20394 0.98430 0.90876 0.93224 1.21120 0.92533 0.99791 1.01414 1.21741 0.95311 0.96475 0.92810 1.19633 0.91119 0.94148 1.10434 1.18274 0.88025 0.78333 0.79313 1.90774 1.69714 1.41863 1.43002 1.48541 1.07713 1.41442 1.37323 1.22467 0.96663 0.93198 0.90067 1.22684 0.90470 0.98509 1.02975 1.22422 0.95898 0.98917 0.94560 0.91164 1.20702 0.84488 0.92316 0.98075 1.42691 1.03615 1.07516 1.86813 1.20439 0.86492 0.95368 1.44172 0.90861 1.27392 1.07445 0.95214 1.00126 1.70996 1.22931 1.13312 1.55352 0.82599 0.70450 0.74070 0.77312 1.22157 1.19792 1.20189 1.22026 0.80485 0.99304 0.98261 1.18861 0.90932 0.91269 0.97741 1.68084 1.41936 0.99279 1.13791 1.23565 0.94150 0.95541 0.91742 1.22287 0.93986 1.01731 1.01347 1.22026 1.02376 0.89979 0.92981 1.18958 0.92174 0.96783 1.04741 0.88603 0.89773 0.88830 0.80746 0.82761 0.90749 0.87816 0.88352 0.87100 0.95368 0.94608 0.81217 0.94978 0.94851 0.91947 0.81362 0.80473 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 9.53 71.24 0.68 0.28 16 2 C -0.03 -0.35 5.89 -19.77 -0.12 -0.47 16 3 C -0.13 -1.56 9.56 21.98 0.21 -1.35 16 4 C -0.04 -0.81 8.40 22.54 0.19 -0.62 16 5 C -0.15 -4.42 5.42 -19.86 -0.11 -4.52 16 6 C 0.57 21.83 7.18 86.66 0.62 22.45 16 7 O -0.57 -28.35 16.58 -4.03 -0.07 -28.42 16 8 N -0.62 -20.42 3.33 -815.65 -2.71 -23.14 16 9 C 0.10 2.08 5.90 86.73 0.51 2.59 16 10 C -0.11 -2.30 6.42 31.78 0.20 -2.09 16 11 C -0.10 -3.29 3.11 -9.40 -0.03 -3.32 16 12 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 13 C 0.17 6.92 5.71 86.38 0.49 7.41 16 14 N -0.76 -41.06 5.45 -343.46 -1.87 -42.93 16 15 C -0.33 -19.67 9.99 84.03 0.84 -18.84 16 16 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.11 -6.83 5.50 84.86 0.47 -6.37 16 18 N -0.98 -65.60 13.70 21.65 0.30 -65.30 16 19 Si 1.13 54.19 29.92 68.60 2.05 56.24 16 20 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.12 4.72 6.11 86.86 0.53 5.25 16 24 C 0.13 3.97 6.59 40.61 0.27 4.24 16 25 N -0.52 -17.61 9.26 -187.96 -1.74 -19.35 16 26 C 0.12 2.85 11.15 85.02 0.95 3.80 16 27 C -0.17 -2.49 10.03 22.13 0.22 -2.27 16 28 C -0.05 -0.62 9.36 22.52 0.21 -0.41 16 29 C -0.12 -2.40 5.74 -21.29 -0.12 -2.53 16 30 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.08 0.11 6.42 -2.39 -0.02 0.10 16 32 H 0.09 0.05 8.08 -2.39 -0.02 0.03 16 33 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.15 2.20 6.09 -2.91 -0.02 2.18 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.50 5.71 -2.39 -0.01 1.49 16 37 H 0.10 1.79 8.04 -2.39 -0.02 1.77 16 38 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.03 1.13 8.10 -2.38 -0.02 1.11 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.36 20.57 6.36 -92.71 -0.59 19.98 16 42 H 0.24 16.33 6.77 -92.71 -0.63 15.70 16 43 H 0.03 1.57 7.99 -2.39 -0.02 1.56 16 44 H 0.06 2.47 8.00 -2.39 -0.02 2.46 16 45 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 46 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.18 0.69 6.42 -2.91 -0.02 0.67 16 Total: -1.00 -95.46 381.83 2.53 -92.94 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.55 Total: 26.72 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 6.02 Total: 3.24 kcal Atomic # 7 Polarization: -144.69 SS G_CDS: -6.03 Total: -150.72 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 54.19 SS G_CDS: 2.05 Total: 56.24 kcal Total: -95.46 2.53 -92.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662661301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.852 kcal (2) G-P(sol) polarization free energy of solvation -95.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds