Wall clock time and date at job start Tue Mar 31 2020 22:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36355 * 119.95884 * 2 1 4 4 C 1.38869 * 121.05942 * 179.97438 * 3 2 1 5 5 C 1.38742 * 120.72474 * 359.97438 * 4 3 2 6 6 C 1.47434 * 120.33260 * 179.97438 * 5 4 3 7 7 O 1.21604 * 120.00338 * 226.96712 * 6 5 4 8 8 N 1.34781 * 119.99702 * 46.97328 * 6 5 4 9 9 C 1.47020 * 125.64811 * 355.18219 * 8 6 5 10 10 C 1.54318 * 107.27075 * 178.92360 * 9 8 6 11 11 C 1.55158 * 102.94161 * 337.80714 * 10 9 8 12 12 H 1.08998 * 111.00492 * 277.38958 * 11 10 9 13 13 C 1.53006 * 111.00556 * 153.57572 * 11 10 9 14 14 N 1.46503 * 109.47156 * 174.99652 * 13 11 10 15 15 C 1.36936 * 120.00093 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99767 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00206 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99908 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00108 * 179.97438 * 17 15 14 20 20 H 1.48510 * 109.47032 * 90.00334 * 19 17 15 21 21 H 1.48494 * 109.47213 * 209.99877 * 19 17 15 22 22 H 1.48504 * 109.47253 * 330.00651 * 19 17 15 23 23 C 1.47422 * 125.64542 * 175.16230 * 8 6 5 24 24 C 1.41777 * 119.33315 * 0.26453 * 5 4 3 25 25 N 1.33355 * 121.04821 * 179.74262 * 24 5 4 26 26 C 1.31232 * 121.35079 * 179.97438 * 25 24 5 27 27 C 1.39235 * 121.69742 * 359.97438 * 26 25 24 28 28 C 1.36638 * 119.90610 * 359.50004 * 27 26 25 29 29 C 1.40442 * 119.95639 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46839 * 90.00244 * 1 2 3 31 31 H 1.08993 * 109.47390 * 210.00788 * 1 2 3 32 32 H 1.09006 * 109.46999 * 330.00768 * 1 2 3 33 33 H 1.08001 * 119.46802 * 359.94701 * 3 2 1 34 34 H 1.08000 * 119.63782 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.88231 * 59.50709 * 9 8 6 36 36 H 1.09007 * 109.88056 * 298.34090 * 9 8 6 37 37 H 1.08998 * 110.72170 * 219.44455 * 10 9 8 38 38 H 1.09000 * 110.87741 * 96.23766 * 10 9 8 39 39 H 1.08997 * 109.46762 * 55.00313 * 13 11 10 40 40 H 1.08996 * 109.47341 * 294.99892 * 13 11 10 41 41 H 0.97001 * 119.99998 * 0.02562 * 14 13 11 42 42 H 0.96998 * 120.00324 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.37120 * 85.30744 * 23 8 6 44 44 H 1.09003 * 110.36805 * 322.98528 * 23 8 6 45 45 H 1.08005 * 119.15069 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.04030 * 180.02562 * 27 26 25 47 47 H 1.07997 * 120.91803 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2080 0.0005 5 6 4.3080 0.0292 0.0016 6 6 5.7818 0.0676 0.0016 7 8 6.4084 -0.6357 -0.7675 8 7 6.4346 0.8821 0.8542 9 6 5.8065 1.8527 1.7624 10 6 6.9390 2.5339 2.5593 11 6 8.0990 1.5083 2.4603 12 1 7.9909 0.7227 3.2081 13 6 9.4567 2.2018 2.5902 14 7 10.5198 1.1939 2.6122 15 6 11.8285 1.5814 2.7224 16 1 12.0770 2.6300 2.7935 17 6 12.8358 0.6265 2.7427 18 7 12.5330 -0.6514 2.6555 19 14 14.6211 1.1552 2.8924 20 1 14.9984 1.2238 4.3271 21 1 15.4889 0.1697 2.1990 22 1 14.7952 2.4923 2.2703 23 6 7.8968 0.9470 1.0307 24 6 3.6241 -1.2127 -0.0035 25 7 4.2931 -2.3663 -0.0078 26 6 3.6661 -3.5191 -0.0121 27 6 2.2759 -3.5959 -0.0118 28 6 1.5304 -2.4509 0.0033 29 6 2.2083 -1.2168 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 1.6386 2.1112 -0.0009 34 1 4.0923 2.1568 0.0001 35 1 5.1306 1.3379 2.4452 36 1 5.2581 2.5983 1.1865 37 1 6.6438 2.6833 3.5979 38 1 7.2216 3.4812 2.1001 39 1 9.4833 2.7780 3.5150 40 1 9.6064 2.8693 1.7417 41 1 10.2966 0.2521 2.5479 42 1 13.2367 -1.3187 2.6701 43 1 8.3386 1.6178 0.2938 44 1 8.3334 -0.0484 0.9487 45 1 4.2434 -4.4320 -0.0150 46 1 1.7875 -4.5592 -0.0150 47 1 0.4512 -2.4914 0.0041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662661302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:46 Heat of formation + Delta-G solvation = 38.253849 kcal Electronic energy + Delta-G solvation = -28551.111558 eV Core-core repulsion = 24699.002598 eV Total energy + Delta-G solvation = -3852.108960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33347 -39.71716 -37.59546 -37.34541 -34.65643 -34.33012 -32.25606 -31.41163 -30.89617 -30.33771 -28.80628 -27.77945 -25.34322 -24.62412 -23.87419 -23.62175 -22.06786 -21.56528 -20.02330 -19.46620 -18.60380 -17.49589 -17.37743 -16.90280 -16.17540 -15.96916 -15.25462 -14.98116 -14.81086 -14.58232 -14.39115 -14.14383 -13.78687 -13.71170 -13.57852 -13.42678 -13.24681 -13.16254 -12.69485 -12.56613 -12.43962 -12.24739 -12.06682 -11.73634 -11.67692 -11.53635 -11.18576 -10.82385 -10.71799 -10.58340 -10.53126 -10.37056 -10.00069 -9.91822 -9.63866 -9.44001 -9.10440 -8.83369 -8.50953 -8.36120 -6.87916 -5.70832 -3.00280 -0.07988 0.52497 1.53122 2.48546 2.90162 3.16994 3.47508 3.52147 3.54558 3.84798 4.00839 4.14931 4.33108 4.41582 4.46579 4.54989 4.62727 4.70081 4.70492 4.85182 4.91707 4.98195 5.06695 5.10705 5.16464 5.31804 5.38294 5.42849 5.48532 5.63108 5.64051 5.64534 5.68407 5.71738 5.88954 5.92427 6.01242 6.04283 6.06936 6.16077 6.19861 6.34386 6.44483 6.48325 6.53924 6.73900 6.87324 7.64834 7.74204 7.77345 8.34583 8.47295 9.58379 10.15897 10.50195 11.51872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002363 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.145629 B =11846.817879 C =12899.895875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.099 4.099 6 C 0.577 3.423 7 O -0.509 6.509 8 N -0.616 5.616 9 C 0.099 3.901 10 C -0.125 4.125 11 C -0.105 4.105 12 H 0.085 0.915 13 C 0.165 3.835 14 N -0.733 5.733 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.119 3.881 24 C 0.164 3.836 25 N -0.453 5.453 26 C 0.136 3.864 27 C -0.175 4.175 28 C -0.060 4.060 29 C -0.106 4.106 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.162 0.838 46 H 0.139 0.861 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.378 1.798 -3.934 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.048 4.048 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.102 4.102 6 C 0.364 3.636 7 O -0.384 6.384 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.164 4.164 11 C -0.125 4.125 12 H 0.103 0.897 13 C 0.037 3.963 14 N -0.378 5.378 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.003 4.003 24 C 0.041 3.959 25 N -0.160 5.160 26 C -0.037 4.037 27 C -0.195 4.195 28 C -0.086 4.086 29 C -0.108 4.108 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.179 0.821 46 H 0.157 0.843 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -29.972 1.595 -4.413 30.337 hybrid contribution 0.023 -0.158 0.104 0.190 sum -29.950 1.437 -4.309 30.292 Atomic orbital electron populations 1.20904 0.90410 1.03435 1.02935 1.19845 0.96247 0.91937 0.96759 1.20692 0.93697 0.97991 1.01920 1.21500 0.94078 0.97517 0.95622 1.19790 0.93620 0.92149 1.04684 1.17490 0.86181 0.79390 0.80529 1.90837 1.67974 1.41031 1.38508 1.48474 1.08457 1.38630 1.39557 1.22174 0.96493 0.91343 0.92359 1.22655 0.94421 0.98854 1.00425 1.22595 0.95639 0.98005 0.96258 0.89679 1.20583 0.85506 0.92087 0.98076 1.42381 1.01779 1.04720 1.88875 1.19205 0.83132 0.92437 1.42428 0.91172 1.24758 0.98003 0.95280 1.02955 1.69663 1.31799 0.99206 1.57311 0.86189 0.85161 0.77329 0.77489 1.21769 1.21781 1.20776 1.22331 0.78491 1.02844 0.96621 1.18534 0.88985 0.91727 0.96657 1.68163 1.39500 0.97583 1.10715 1.23152 0.92024 0.96201 0.92296 1.21959 0.95570 0.99655 1.02274 1.21492 1.00440 0.91240 0.95437 1.18624 0.93566 0.94410 1.04188 0.90426 0.91044 0.90701 0.84836 0.84317 0.91648 0.91577 0.90000 0.90231 0.95831 0.96013 0.78174 0.93478 0.91076 0.89852 0.82116 0.84324 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.53 36.00 0.34 -0.21 16 2 C -0.05 -0.38 5.89 -104.47 -0.62 -1.00 16 3 C -0.13 -0.99 9.57 -40.03 -0.38 -1.37 16 4 C -0.07 -0.68 8.50 -39.16 -0.33 -1.01 16 5 C -0.10 -1.40 5.46 -104.61 -0.57 -1.97 16 6 C 0.58 10.10 7.15 -12.51 -0.09 10.01 16 7 O -0.51 -11.10 16.74 5.27 0.09 -11.01 16 8 N -0.62 -9.65 3.33 -171.79 -0.57 -10.22 16 9 C 0.10 1.13 5.62 -3.07 -0.02 1.12 16 10 C -0.13 -1.47 6.42 -24.90 -0.16 -1.63 16 11 C -0.11 -1.72 3.05 -88.47 -0.27 -1.99 16 12 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 13 C 0.17 3.29 5.72 -4.04 -0.02 3.26 16 14 N -0.73 -18.91 5.55 -59.91 -0.33 -19.24 16 15 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 19 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.12 2.10 6.31 -2.53 -0.02 2.09 16 24 C 0.16 2.34 6.59 -84.58 -0.56 1.78 16 25 N -0.45 -7.03 9.33 -10.76 -0.10 -7.13 16 26 C 0.14 1.52 11.15 -17.44 -0.19 1.32 16 27 C -0.17 -1.41 10.03 -39.79 -0.40 -1.81 16 28 C -0.06 -0.49 9.36 -39.19 -0.37 -0.85 16 29 C -0.11 -1.12 5.74 -106.82 -0.61 -1.74 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.26 6.41 -51.93 -0.33 -0.07 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.14 1.15 5.86 -52.49 -0.31 0.84 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.59 5.97 -51.93 -0.31 0.28 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.44 7.96 -51.93 -0.41 0.02 16 41 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 44 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 45 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 46 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.14 0.66 6.42 -52.49 -0.34 0.33 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -37.56 383.87 -10.55 -48.11 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.61 Total: 5.67 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -4.51 Total: -1.53 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.28 Total: -64.90 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.56 -10.55 -48.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662661302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.368 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds