Wall clock time and date at job start Tue Mar 31 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39312 * 119.06046 * 2 1 4 4 C 1.38857 * 119.57747 * 180.25970 * 3 2 1 5 5 C 1.47916 * 121.10955 * 179.76274 * 4 3 2 6 6 O 1.21534 * 119.99784 * 135.03506 * 5 4 3 7 7 N 1.34772 * 119.99654 * 315.03814 * 5 4 3 8 8 C 1.47020 * 125.65297 * 354.75072 * 7 5 4 9 9 C 1.54328 * 107.27113 * 181.09580 * 8 7 5 10 10 C 1.55157 * 102.93993 * 22.19334 * 9 8 7 11 11 H 1.09000 * 111.03461 * 82.58971 * 10 9 8 12 12 C 1.53000 * 111.00183 * 206.41979 * 10 9 8 13 13 N 1.46503 * 109.46942 * 178.65108 * 12 10 9 14 14 C 1.36942 * 119.99660 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99738 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47052 * 269.99949 * 18 16 14 20 20 H 1.48502 * 109.47251 * 29.99853 * 18 16 14 21 21 H 1.48503 * 109.47289 * 149.99896 * 18 16 14 22 22 C 1.47429 * 125.64475 * 174.79397 * 7 5 4 23 23 C 1.41820 * 117.77814 * 359.49038 * 4 3 2 24 24 C 1.40102 * 121.36610 * 180.29825 * 23 4 3 25 25 C 1.36250 * 119.63941 * 179.97438 * 24 23 4 26 26 C 1.39341 * 120.83657 * 0.02562 * 25 24 23 27 27 C 1.36069 * 121.05157 * 359.97438 * 26 25 24 28 28 C 1.40707 * 119.73941 * 0.02562 * 27 26 25 29 29 N 1.30972 * 119.06193 * 179.75573 * 2 1 3 30 30 H 1.08999 * 109.47529 * 270.23893 * 1 2 3 31 31 H 1.09000 * 109.46891 * 30.24127 * 1 2 3 32 32 H 1.09004 * 109.46686 * 150.24015 * 1 2 3 33 33 H 1.08006 * 120.21105 * 0.04301 * 3 2 1 34 34 H 1.08994 * 109.88510 * 300.51426 * 8 7 5 35 35 H 1.09001 * 109.88143 * 61.52387 * 8 7 5 36 36 H 1.08997 * 110.72125 * 263.83218 * 9 8 7 37 37 H 1.08999 * 110.71917 * 140.56104 * 9 8 7 38 38 H 1.09001 * 109.47123 * 58.65268 * 12 10 9 39 39 H 1.09002 * 109.47662 * 298.65272 * 12 10 9 40 40 H 0.96995 * 120.00359 * 0.02562 * 13 12 10 41 41 H 0.97001 * 119.99466 * 179.97438 * 17 16 14 42 42 H 1.09004 * 110.36769 * 36.99402 * 22 7 5 43 43 H 1.09002 * 110.46357 * 274.72470 * 22 7 5 44 44 H 1.07993 * 120.18055 * 359.95363 * 24 23 4 45 45 H 1.08001 * 119.57990 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.47892 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.12908 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0055 5 6 4.3250 2.5035 -0.0109 6 8 5.2782 2.6490 0.7289 7 7 3.9537 3.5023 -0.8362 8 6 2.8956 3.4243 -1.8539 9 6 2.8459 4.7911 -2.5688 10 6 4.2574 5.3760 -2.2987 11 1 4.9854 4.9852 -3.0096 12 6 4.2322 6.9055 -2.3291 13 7 5.5721 7.4218 -2.0389 14 6 5.7940 8.7729 -2.0108 15 1 4.9812 9.4577 -2.2022 16 6 7.0638 9.2621 -1.7363 17 7 8.0543 8.4274 -1.5026 18 14 7.3667 11.1049 -1.6987 19 1 7.7508 11.5712 -3.0552 20 1 6.1279 11.8015 -1.2682 21 1 8.4622 11.4071 -0.7427 22 6 4.5420 4.8537 -0.8685 23 6 4.2445 -0.0184 0.0003 24 6 5.6435 -0.0935 0.0016 25 6 6.2529 -1.3121 0.0077 26 6 5.5023 -2.4860 0.0121 27 6 4.1421 -2.4494 0.0110 28 6 3.4773 -1.2093 0.0048 29 7 2.1432 -1.1448 0.0049 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8922 -0.5101 33 1 1.6318 2.1462 0.0007 34 1 3.1293 2.6386 -2.5722 35 1 1.9373 3.2176 -1.3773 36 1 2.0752 5.4267 -2.1327 37 1 2.6804 4.6611 -3.6383 38 1 3.5312 7.2723 -1.5793 39 1 3.9183 7.2443 -3.3164 40 1 6.3021 6.8068 -1.8666 41 1 8.9417 8.7693 -1.3112 42 1 5.6161 4.8042 -0.6894 43 1 4.0640 5.4952 -0.1281 44 1 6.2356 0.8097 -0.0026 45 1 7.3314 -1.3688 0.0083 46 1 6.0082 -3.4402 0.0174 47 1 3.5751 -3.3685 0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662717370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:58 Heat of formation + Delta-G solvation = 35.299175 kcal Electronic energy + Delta-G solvation = -28600.558972 eV Core-core repulsion = 24748.321888 eV Total energy + Delta-G solvation = -3852.237084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41248 -39.82401 -37.75923 -37.58403 -34.75994 -33.76993 -32.32205 -32.27423 -30.62641 -30.23285 -28.74722 -28.08812 -26.04343 -24.63056 -23.61281 -22.88774 -22.56469 -22.01501 -20.12292 -19.47787 -18.44145 -17.73954 -17.46070 -16.96353 -16.07749 -15.96526 -15.48034 -15.03484 -14.93921 -14.65021 -14.45837 -14.21687 -14.06893 -13.64339 -13.48103 -13.36669 -13.27757 -13.12464 -12.81883 -12.62202 -12.55953 -12.24434 -11.86533 -11.77265 -11.65858 -11.62020 -11.33835 -10.90308 -10.83104 -10.68773 -10.61571 -10.48780 -10.39557 -10.04601 -9.70349 -9.61696 -8.97788 -8.90195 -8.70300 -8.48313 -6.95385 -5.77548 -3.07332 -0.08803 0.49774 1.51087 2.47831 2.66199 2.86477 3.43049 3.47918 3.50091 3.79836 3.81555 4.04580 4.30600 4.40750 4.54260 4.55874 4.56554 4.73294 4.76577 4.87107 4.93065 5.02948 5.06280 5.17154 5.23892 5.24806 5.37429 5.40582 5.50000 5.54107 5.57323 5.60466 5.77841 5.79737 5.80996 5.89693 5.93391 6.03487 6.06463 6.14579 6.22185 6.24225 6.33466 6.35523 6.56508 6.63875 6.76949 7.37557 7.59235 7.68194 7.95645 8.40521 9.51841 10.08158 10.42328 11.45037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.002435 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.360265 B =11495.584261 C =12683.757028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.142 4.142 4 C -0.051 4.051 5 C 0.571 3.429 6 O -0.520 6.520 7 N -0.608 5.608 8 C 0.096 3.904 9 C -0.125 4.125 10 C -0.105 4.105 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.291 1.291 22 C 0.115 3.885 23 C -0.074 4.074 24 C -0.086 4.086 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.100 4.100 28 C 0.134 3.866 29 N -0.466 5.466 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 -22.421 0.456 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 C -0.163 4.163 4 C -0.063 4.063 5 C 0.358 3.642 6 O -0.396 6.396 7 N -0.342 5.342 8 C -0.027 4.027 9 C -0.163 4.163 10 C -0.125 4.125 11 H 0.104 0.896 12 C 0.037 3.963 13 N -0.378 5.378 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.208 1.208 21 H -0.218 1.218 22 C -0.006 4.006 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.135 4.135 26 C -0.115 4.115 27 C -0.118 4.118 28 C 0.012 3.988 29 N -0.176 5.176 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.712 -23.045 0.913 27.356 hybrid contribution 0.964 1.635 0.101 1.901 sum -13.748 -21.410 1.014 25.464 Atomic orbital electron populations 1.20797 0.88052 1.03930 1.03546 1.21406 0.97272 0.87571 0.93377 1.22285 0.93293 0.99944 1.00748 1.20380 0.93957 0.93174 0.98742 1.17687 0.83700 0.82272 0.80553 1.90833 1.27068 1.81114 1.40585 1.48483 1.37117 1.12999 1.35563 1.22242 0.90690 0.99281 0.90472 1.22666 0.98235 0.94486 1.00918 1.22594 0.96247 0.97836 0.95817 0.89633 1.20586 0.89549 0.88261 0.97884 1.42369 1.05232 1.04799 1.85386 1.19200 0.94281 0.83227 1.40658 0.91141 1.24761 0.95925 0.97714 1.02497 1.69665 1.00774 1.32940 1.54575 0.86188 0.77452 0.85188 0.77327 1.21714 1.20755 1.21753 1.22411 1.00337 0.80184 0.97672 1.18607 0.95000 0.92153 1.01950 1.21303 0.92935 0.99489 0.96765 1.21029 1.00703 0.92059 0.99738 1.20973 0.93710 0.98826 0.97983 1.20771 0.94208 0.96031 1.00804 1.18778 0.88765 0.92764 0.98500 1.67629 1.08708 1.28799 1.12432 0.89944 0.90235 0.90052 0.83687 0.91432 0.91208 0.90054 0.89780 0.95982 0.95725 0.78195 0.93440 0.89492 0.90584 0.84016 0.85151 0.85086 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.14 36.01 0.37 -0.29 16 2 C 0.16 1.55 6.78 -82.56 -0.56 0.99 16 3 C -0.14 -1.47 8.16 -38.95 -0.32 -1.79 16 4 C -0.05 -0.67 5.43 -104.34 -0.57 -1.24 16 5 C 0.57 8.76 6.99 -12.30 -0.09 8.67 16 6 O -0.52 -9.83 15.39 5.34 0.08 -9.74 16 7 N -0.61 -8.44 3.33 -171.61 -0.57 -9.01 16 8 C 0.10 0.98 5.95 -3.06 -0.02 0.96 16 9 C -0.12 -1.31 6.42 -24.89 -0.16 -1.47 16 10 C -0.11 -1.57 3.10 -88.47 -0.27 -1.84 16 11 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.17 3.09 5.71 -4.04 -0.02 3.07 16 13 N -0.73 -18.12 5.45 -59.90 -0.33 -18.44 16 14 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 C 0.12 1.85 6.11 -2.53 -0.02 1.83 16 23 C -0.07 -0.99 5.76 -106.52 -0.61 -1.61 16 24 C -0.09 -1.11 9.19 -39.60 -0.36 -1.48 16 25 C -0.12 -1.19 9.96 -39.89 -0.40 -1.59 16 26 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 27 C -0.10 -1.00 9.99 -39.43 -0.39 -1.39 16 28 C 0.13 1.65 6.61 -84.88 -0.56 1.09 16 29 N -0.47 -5.50 10.19 -7.25 -0.07 -5.57 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.15 1.17 6.24 -52.48 -0.33 0.84 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.55 5.81 -51.93 -0.30 0.25 16 36 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.42 8.10 -51.93 -0.42 -0.01 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.38 10.09 7.53 -40.82 -0.31 9.78 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.09 1.64 7.99 -51.93 -0.41 1.23 16 43 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 44 H 0.14 2.03 6.15 -52.49 -0.32 1.71 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -34.17 385.10 -10.71 -44.88 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.70 Total: 6.90 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -4.63 Total: -4.62 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.25 Total: -60.57 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.17 -10.71 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662717370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.180 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds