Wall clock time and date at job start Tue Mar 31 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39312 * 119.06046 * 2 1 4 4 C 1.38857 * 119.57747 * 180.25970 * 3 2 1 5 5 C 1.47916 * 121.10955 * 179.76274 * 4 3 2 6 6 O 1.21534 * 119.99784 * 135.03506 * 5 4 3 7 7 N 1.34772 * 119.99654 * 315.03814 * 5 4 3 8 8 C 1.47020 * 125.65297 * 354.75072 * 7 5 4 9 9 C 1.54328 * 107.27113 * 181.09580 * 8 7 5 10 10 C 1.55157 * 102.93993 * 22.19334 * 9 8 7 11 11 H 1.09000 * 111.03461 * 82.58971 * 10 9 8 12 12 C 1.53000 * 111.00183 * 206.41979 * 10 9 8 13 13 N 1.46503 * 109.46942 * 178.65108 * 12 10 9 14 14 C 1.36942 * 119.99660 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00021 * 0.02562 * 14 13 12 16 16 C 1.38813 * 119.99738 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99925 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47052 * 269.99949 * 18 16 14 20 20 H 1.48502 * 109.47251 * 29.99853 * 18 16 14 21 21 H 1.48503 * 109.47289 * 149.99896 * 18 16 14 22 22 C 1.47429 * 125.64475 * 174.79397 * 7 5 4 23 23 C 1.41820 * 117.77814 * 359.49038 * 4 3 2 24 24 C 1.40102 * 121.36610 * 180.29825 * 23 4 3 25 25 C 1.36250 * 119.63941 * 179.97438 * 24 23 4 26 26 C 1.39341 * 120.83657 * 0.02562 * 25 24 23 27 27 C 1.36069 * 121.05157 * 359.97438 * 26 25 24 28 28 C 1.40707 * 119.73941 * 0.02562 * 27 26 25 29 29 N 1.30972 * 119.06193 * 179.75573 * 2 1 3 30 30 H 1.08999 * 109.47529 * 270.23893 * 1 2 3 31 31 H 1.09000 * 109.46891 * 30.24127 * 1 2 3 32 32 H 1.09004 * 109.46686 * 150.24015 * 1 2 3 33 33 H 1.08006 * 120.21105 * 0.04301 * 3 2 1 34 34 H 1.08994 * 109.88510 * 300.51426 * 8 7 5 35 35 H 1.09001 * 109.88143 * 61.52387 * 8 7 5 36 36 H 1.08997 * 110.72125 * 263.83218 * 9 8 7 37 37 H 1.08999 * 110.71917 * 140.56104 * 9 8 7 38 38 H 1.09001 * 109.47123 * 58.65268 * 12 10 9 39 39 H 1.09002 * 109.47662 * 298.65272 * 12 10 9 40 40 H 0.96995 * 120.00359 * 0.02562 * 13 12 10 41 41 H 0.97001 * 119.99466 * 179.97438 * 17 16 14 42 42 H 1.09004 * 110.36769 * 36.99402 * 22 7 5 43 43 H 1.09002 * 110.46357 * 274.72470 * 22 7 5 44 44 H 1.07993 * 120.18055 * 359.95363 * 24 23 4 45 45 H 1.08001 * 119.57990 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.47892 * 180.02562 * 26 25 24 47 47 H 1.07995 * 120.12908 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0055 5 6 4.3250 2.5035 -0.0109 6 8 5.2782 2.6490 0.7289 7 7 3.9537 3.5023 -0.8362 8 6 2.8956 3.4243 -1.8539 9 6 2.8459 4.7911 -2.5688 10 6 4.2574 5.3760 -2.2987 11 1 4.9854 4.9852 -3.0096 12 6 4.2322 6.9055 -2.3291 13 7 5.5721 7.4218 -2.0389 14 6 5.7940 8.7729 -2.0108 15 1 4.9812 9.4577 -2.2022 16 6 7.0638 9.2621 -1.7363 17 7 8.0543 8.4274 -1.5026 18 14 7.3667 11.1049 -1.6987 19 1 7.7508 11.5712 -3.0552 20 1 6.1279 11.8015 -1.2682 21 1 8.4622 11.4071 -0.7427 22 6 4.5420 4.8537 -0.8685 23 6 4.2445 -0.0184 0.0003 24 6 5.6435 -0.0935 0.0016 25 6 6.2529 -1.3121 0.0077 26 6 5.5023 -2.4860 0.0121 27 6 4.1421 -2.4494 0.0110 28 6 3.4773 -1.2093 0.0048 29 7 2.1432 -1.1448 0.0049 30 1 -0.3634 0.0043 1.0276 31 1 -0.3633 0.8878 -0.5176 32 1 -0.3633 -0.8922 -0.5101 33 1 1.6318 2.1462 0.0007 34 1 3.1293 2.6386 -2.5722 35 1 1.9373 3.2176 -1.3773 36 1 2.0752 5.4267 -2.1327 37 1 2.6804 4.6611 -3.6383 38 1 3.5312 7.2723 -1.5793 39 1 3.9183 7.2443 -3.3164 40 1 6.3021 6.8068 -1.8666 41 1 8.9417 8.7693 -1.3112 42 1 5.6161 4.8042 -0.6894 43 1 4.0640 5.4952 -0.1281 44 1 6.2356 0.8097 -0.0026 45 1 7.3314 -1.3688 0.0083 46 1 6.0082 -3.4402 0.0174 47 1 3.5751 -3.3685 0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662717370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:57 Heat of formation + Delta-G solvation = 13.582753 kcal Electronic energy + Delta-G solvation = -28601.500667 eV Core-core repulsion = 24748.321888 eV Total energy + Delta-G solvation = -3853.178779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31492 -40.90462 -38.96025 -38.39916 -36.48688 -34.78894 -33.84254 -33.02130 -32.12745 -31.14387 -30.03026 -28.77139 -27.46981 -25.94501 -24.83999 -23.86568 -23.55795 -23.22217 -21.42143 -20.53094 -19.29916 -19.07558 -18.61430 -18.33728 -17.27143 -17.00298 -16.56363 -16.40995 -15.91167 -15.73956 -15.57983 -15.33062 -15.14240 -15.05940 -14.87916 -14.44059 -14.17802 -14.00040 -13.93943 -13.84866 -13.46776 -13.14719 -13.05061 -13.02401 -12.75540 -12.58063 -12.40928 -12.35951 -12.25641 -12.15597 -11.93828 -11.73934 -11.63716 -11.57762 -11.48936 -10.94885 -10.56198 -9.85837 -9.75348 -9.33451 -9.00924 -7.95555 -5.24955 -0.95287 -0.30521 0.60922 1.43444 1.46506 1.48643 1.56998 1.68044 1.89097 2.55385 2.95845 3.06164 3.13918 3.38190 3.46662 3.56833 3.57256 3.62658 3.77581 3.84382 4.01302 4.10432 4.17398 4.22925 4.31188 4.36108 4.38217 4.45294 4.53258 4.63653 4.65742 4.77544 4.82212 4.83526 4.86319 4.96513 4.97505 5.01208 5.04144 5.13322 5.16804 5.21120 5.31358 5.39443 5.41924 5.48498 5.49816 5.80045 6.25870 6.26673 6.77919 6.79571 7.32139 8.08647 8.29562 9.28190 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.002435 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.360265 B =11495.584261 C =12683.757028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 C -0.125 4.125 4 C -0.076 4.076 5 C 0.568 3.432 6 O -0.572 6.572 7 N -0.605 5.605 8 C 0.092 3.908 9 C -0.109 4.109 10 C -0.098 4.098 11 H 0.074 0.926 12 C 0.164 3.836 13 N -0.750 5.750 14 C -0.242 4.242 15 H 0.081 0.919 16 C -0.080 4.080 17 N -0.973 5.973 18 Si 0.975 3.025 19 H -0.286 1.286 20 H -0.266 1.266 21 H -0.299 1.299 22 C 0.120 3.880 23 C -0.094 4.094 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.089 4.089 27 C -0.101 4.101 28 C 0.115 3.885 29 N -0.476 5.476 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.149 0.851 46 H 0.169 0.831 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 -23.627 -0.530 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.145 4.145 4 C -0.087 4.087 5 C 0.357 3.643 6 O -0.452 6.452 7 N -0.337 5.337 8 C -0.029 4.029 9 C -0.147 4.147 10 C -0.117 4.117 11 H 0.092 0.908 12 C 0.037 3.963 13 N -0.392 5.392 14 C -0.374 4.374 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.624 5.624 18 Si 0.804 3.196 19 H -0.213 1.213 20 H -0.191 1.191 21 H -0.226 1.226 22 C -0.003 4.003 23 C -0.097 4.097 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.007 4.007 29 N -0.186 5.186 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.103 0.897 33 H 0.189 0.811 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.167 0.833 46 H 0.187 0.813 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.341 -24.257 -0.116 30.411 hybrid contribution 1.994 1.935 0.403 2.808 sum -16.347 -22.322 0.287 27.669 Atomic orbital electron populations 1.20936 0.84942 1.05459 1.04673 1.22066 0.99110 0.86797 0.91975 1.22585 0.91998 1.01403 0.98522 1.20235 0.95082 0.91754 1.01611 1.18146 0.83202 0.83143 0.79844 1.90793 1.29434 1.82115 1.42816 1.48523 1.37612 1.11689 1.35903 1.22550 0.90878 0.99538 0.89928 1.22690 0.95024 0.94156 1.02851 1.22418 0.99422 0.95381 0.94503 0.90794 1.20781 0.86645 0.90613 0.98214 1.42653 1.07271 1.03921 1.85390 1.19673 0.94411 0.84762 1.38546 0.90086 1.25628 0.96000 1.02147 1.03458 1.69844 1.00943 1.34843 1.56758 0.85117 0.77393 0.80082 0.77042 1.21274 1.19092 1.22617 1.22154 0.97857 0.81740 0.98521 1.18784 0.95229 0.92877 1.02789 1.21213 0.93220 0.99639 0.99942 1.21342 1.01907 0.91667 0.97804 1.21341 0.93405 0.99637 0.96463 1.21127 0.94889 0.96009 0.99911 1.19100 0.89230 0.93135 0.99209 1.67724 1.08356 1.29726 1.12811 0.88827 0.87582 0.89680 0.81070 0.90416 0.87771 0.88267 0.87148 0.95184 0.94570 0.79765 0.94155 0.93841 0.91336 0.86912 0.83291 0.81306 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.14 71.24 0.72 -0.15 16 2 C 0.15 2.67 6.78 42.95 0.29 2.96 16 3 C -0.13 -2.34 8.16 22.68 0.19 -2.15 16 4 C -0.08 -2.02 5.43 -19.68 -0.11 -2.13 16 5 C 0.57 18.45 6.99 86.81 0.61 19.05 16 6 O -0.57 -23.83 15.39 -3.82 -0.06 -23.89 16 7 N -0.61 -17.05 3.33 -815.13 -2.71 -19.76 16 8 C 0.09 1.64 5.95 86.73 0.52 2.16 16 9 C -0.11 -1.95 6.42 31.78 0.20 -1.74 16 10 C -0.10 -2.88 3.10 -9.40 -0.03 -2.91 16 11 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 12 C 0.16 6.03 5.71 86.38 0.49 6.53 16 13 N -0.75 -37.90 5.45 -343.44 -1.87 -39.77 16 14 C -0.24 -13.48 9.99 84.03 0.84 -12.64 16 15 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 16 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 17 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 18 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 22 C 0.12 4.05 6.11 86.85 0.53 4.58 16 23 C -0.09 -2.59 5.76 -21.10 -0.12 -2.72 16 24 C -0.12 -3.38 9.19 22.26 0.20 -3.17 16 25 C -0.11 -2.23 9.96 22.07 0.22 -2.01 16 26 C -0.09 -1.40 9.94 22.03 0.22 -1.19 16 27 C -0.10 -1.86 9.99 22.37 0.22 -1.64 16 28 C 0.11 2.75 6.61 40.33 0.27 3.01 16 29 N -0.48 -10.45 10.19 -176.85 -1.80 -12.25 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.36 8.07 -2.39 -0.02 0.34 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.17 2.13 6.24 -2.91 -0.02 2.11 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.19 5.81 -2.39 -0.01 1.18 16 36 H 0.10 1.49 8.04 -2.39 -0.02 1.47 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.37 20.50 7.53 -92.71 -0.70 19.80 16 41 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.04 1.82 7.99 -2.39 -0.02 1.80 16 43 H 0.07 2.38 8.00 -2.39 -0.02 2.36 16 44 H 0.11 3.72 6.15 -2.91 -0.02 3.70 16 45 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -80.01 385.10 1.89 -78.11 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.30 Total: 28.28 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.73 Total: 1.62 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -6.10 Total: -132.77 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.89 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -80.01 1.89 -78.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662717370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.697 kcal (2) G-P(sol) polarization free energy of solvation -80.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds