Wall clock time and date at job start Tue Mar 31 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39315 * 119.06650 * 2 1 4 4 C 1.38849 * 119.58075 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.10893 * 180.02562 * 4 3 2 6 6 O 1.21544 * 120.00034 * 227.25006 * 5 4 3 7 7 N 1.34780 * 120.00183 * 47.25381 * 5 4 3 8 8 C 1.47023 * 125.64545 * 355.14741 * 7 5 4 9 9 C 1.54323 * 107.27146 * 178.90771 * 8 7 5 10 10 C 1.55154 * 103.10004 * 337.71906 * 9 8 7 11 11 H 1.09003 * 110.99996 * 277.51426 * 10 9 8 12 12 C 1.52999 * 111.00360 * 153.66752 * 10 9 8 13 13 N 1.46508 * 109.47116 * 174.99889 * 12 10 9 14 14 C 1.36930 * 119.99932 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00664 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99690 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00126 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99684 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47290 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46997 * 120.00409 * 18 16 14 21 21 H 1.48504 * 109.46840 * 240.00161 * 18 16 14 22 22 C 1.47420 * 125.64852 * 175.10759 * 7 5 4 23 23 C 1.41818 * 117.77775 * 0.26975 * 4 3 2 24 24 C 1.40106 * 121.36900 * 179.68277 * 23 4 3 25 25 C 1.36255 * 119.64081 * 180.02562 * 24 23 4 26 26 C 1.39342 * 120.83537 * 0.02562 * 25 24 23 27 27 C 1.36072 * 121.05098 * 359.40496 * 26 25 24 28 28 C 1.40708 * 119.73658 * 0.89899 * 27 26 25 29 29 N 1.30972 * 119.05680 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47008 * 89.99830 * 1 2 3 31 31 H 1.08993 * 109.47679 * 210.00394 * 1 2 3 32 32 H 1.09004 * 109.46647 * 330.00414 * 1 2 3 33 33 H 1.08007 * 120.20496 * 0.04319 * 3 2 1 34 34 H 1.09000 * 109.88364 * 59.48821 * 8 7 5 35 35 H 1.09006 * 109.88049 * 298.32665 * 8 7 5 36 36 H 1.08994 * 110.72382 * 96.16727 * 9 8 7 37 37 H 1.09000 * 110.72165 * 219.26793 * 9 8 7 38 38 H 1.09002 * 109.46956 * 294.99318 * 12 10 9 39 39 H 1.09000 * 109.47309 * 54.99776 * 12 10 9 40 40 H 0.97003 * 119.99538 * 359.97438 * 13 12 10 41 41 H 0.97001 * 119.99764 * 179.97438 * 17 16 14 42 42 H 1.08993 * 110.36996 * 322.99787 * 22 7 5 43 43 H 1.09001 * 110.36640 * 85.21778 * 22 7 5 44 44 H 1.07996 * 120.17610 * 0.07151 * 24 23 4 45 45 H 1.07998 * 119.57697 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.47598 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.12945 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2302 -0.0005 5 6 4.3250 2.5033 0.0000 6 8 5.2491 2.6633 -0.7732 7 7 3.9864 3.4861 0.8580 8 6 2.8349 3.4666 1.7718 9 6 2.8641 4.7847 2.5738 10 6 4.3485 5.2246 2.4735 11 1 4.9592 4.7111 3.2163 12 6 4.4813 6.7425 2.6123 13 7 5.8997 7.1089 2.6326 14 6 6.2657 8.4231 2.7498 15 1 5.5089 9.1897 2.8268 16 6 7.6097 8.7702 2.7696 17 7 8.5320 7.8360 2.6753 18 14 8.1090 10.5632 2.9288 19 1 6.8923 11.4100 3.0161 20 1 8.9266 10.7423 4.1555 21 1 8.9052 10.9626 1.7406 22 6 4.7098 4.7582 1.0360 23 6 4.2444 -0.0186 -0.0070 24 6 5.6434 -0.0938 -0.0146 25 6 6.2527 -1.3125 -0.0211 26 6 5.5020 -2.4864 -0.0209 27 6 4.1419 -2.4497 -0.0021 28 6 3.4771 -1.2095 -0.0016 29 7 2.1431 -1.1449 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6319 2.1461 0.0007 34 1 2.9148 2.6177 2.4508 35 1 1.9091 3.4008 1.2002 36 1 2.2100 5.5280 2.1181 37 1 2.5828 4.6106 3.6124 38 1 3.9926 7.2286 1.7678 39 1 4.0093 7.0652 3.5403 40 1 6.5794 6.4203 2.5631 41 1 9.4711 8.0786 2.6887 42 1 5.7844 4.5991 0.9481 43 1 4.3743 5.4913 0.3024 44 1 6.2356 0.8093 -0.0145 45 1 7.3312 -1.3692 -0.0274 46 1 6.0078 -3.4406 -0.0266 47 1 3.5747 -3.3688 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662717371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:02 Heat of formation + Delta-G solvation = 35.092254 kcal Electronic energy + Delta-G solvation = -28584.715568 eV Core-core repulsion = 24732.469511 eV Total energy + Delta-G solvation = -3852.246057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41523 -39.82491 -37.75303 -37.58329 -34.76661 -33.78043 -32.32429 -32.27651 -30.62087 -30.25431 -28.76794 -28.08821 -26.04550 -24.65328 -23.59781 -22.88945 -22.55600 -22.02856 -20.16132 -19.49214 -18.45491 -17.72770 -17.44528 -16.95435 -16.06860 -16.06284 -15.49752 -15.02924 -14.94649 -14.65660 -14.36494 -14.24197 -14.10319 -13.64441 -13.49067 -13.36796 -13.27515 -13.13262 -12.84009 -12.64700 -12.55673 -12.24925 -11.88218 -11.78919 -11.65279 -11.63052 -11.32264 -10.90987 -10.85046 -10.68280 -10.63179 -10.48703 -10.40945 -10.02451 -9.71565 -9.62129 -8.97910 -8.91034 -8.72904 -8.48735 -6.95719 -5.78266 -3.07814 -0.08247 0.49695 1.51707 2.46279 2.63108 2.85835 3.42564 3.47876 3.50422 3.79491 3.81591 4.02683 4.30285 4.40300 4.53833 4.55026 4.56245 4.71810 4.75953 4.87181 4.91907 5.02961 5.05782 5.16546 5.22958 5.23324 5.36222 5.40005 5.49697 5.52644 5.56564 5.60223 5.77635 5.79145 5.80571 5.89182 5.92184 6.01645 6.06564 6.13370 6.21242 6.23954 6.31730 6.32993 6.56388 6.63955 6.76318 7.35492 7.59208 7.68336 7.93682 8.39816 9.51317 10.07630 10.41855 11.44448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002449 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.131077 B =11428.993126 C =12687.785017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.145 4.145 4 C -0.050 4.050 5 C 0.571 3.429 6 O -0.521 6.521 7 N -0.608 5.608 8 C 0.096 3.904 9 C -0.125 4.125 10 C -0.105 4.105 11 H 0.086 0.914 12 C 0.165 3.835 13 N -0.733 5.733 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.115 3.885 23 C -0.074 4.074 24 C -0.086 4.086 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.099 4.099 28 C 0.134 3.866 29 N -0.466 5.466 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 -20.836 -3.725 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.004 3.996 3 C -0.165 4.165 4 C -0.062 4.062 5 C 0.358 3.642 6 O -0.397 6.397 7 N -0.341 5.341 8 C -0.026 4.026 9 C -0.164 4.164 10 C -0.124 4.124 11 H 0.105 0.895 12 C 0.037 3.963 13 N -0.378 5.378 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.006 4.006 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.135 4.135 26 C -0.115 4.115 27 C -0.118 4.118 28 C 0.012 3.988 29 N -0.176 5.176 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.220 -21.449 -4.179 27.214 hybrid contribution 1.070 1.567 0.046 1.898 sum -15.151 -19.882 -4.133 25.336 Atomic orbital electron populations 1.20796 0.88061 1.03936 1.03530 1.21403 0.97267 0.87574 0.93356 1.22299 0.93296 0.99983 1.00920 1.20362 0.93993 0.93167 0.98637 1.17690 0.83602 0.82269 0.80635 1.90839 1.29599 1.80683 1.38576 1.48487 1.29072 1.18142 1.38393 1.22257 0.88595 0.99542 0.92248 1.22667 0.97681 0.95491 1.00537 1.22685 0.95230 0.98656 0.95846 0.89533 1.20582 0.88314 0.89154 0.98218 1.42378 1.00384 1.06169 1.88847 1.19247 0.91245 0.84377 1.42390 0.91082 1.24760 0.95785 0.97545 1.02840 1.69670 0.99786 1.31203 1.57317 0.86119 0.78194 0.84616 0.77257 1.20549 1.21857 1.21839 1.22509 0.98025 0.83018 0.97030 1.18593 0.94987 0.92123 1.01999 1.21276 0.92903 0.99454 0.96856 1.21031 1.00726 0.92047 0.99660 1.20975 0.93709 0.98833 0.97947 1.20776 0.94212 0.96030 1.00784 1.18775 0.88760 0.92748 0.98478 1.67629 1.08706 1.28794 1.12464 0.89959 0.90045 0.90239 0.83707 0.91336 0.91222 0.90078 0.89759 0.95948 0.95679 0.78224 0.93501 0.89663 0.90656 0.84145 0.85120 0.85064 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.14 36.00 0.37 -0.28 16 2 C 0.16 1.55 6.78 -82.56 -0.56 0.99 16 3 C -0.14 -1.48 8.25 -38.96 -0.32 -1.80 16 4 C -0.05 -0.66 5.47 -104.34 -0.57 -1.23 16 5 C 0.57 8.69 6.94 -12.30 -0.09 8.61 16 6 O -0.52 -9.75 15.61 5.33 0.08 -9.67 16 7 N -0.61 -8.36 3.33 -171.30 -0.57 -8.93 16 8 C 0.10 0.97 5.66 -3.06 -0.02 0.96 16 9 C -0.13 -1.32 6.41 -24.90 -0.16 -1.48 16 10 C -0.10 -1.55 3.07 -88.21 -0.27 -1.82 16 11 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.17 3.09 5.73 -4.04 -0.02 3.07 16 13 N -0.73 -18.09 5.56 -59.90 -0.33 -18.43 16 14 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.12 1.83 6.33 -2.27 -0.01 1.81 16 23 C -0.07 -0.99 5.76 -106.52 -0.61 -1.61 16 24 C -0.09 -1.12 9.20 -39.59 -0.36 -1.48 16 25 C -0.12 -1.19 9.96 -39.88 -0.40 -1.59 16 26 C -0.09 -0.84 9.94 -39.95 -0.40 -1.24 16 27 C -0.10 -1.00 9.99 -39.43 -0.39 -1.39 16 28 C 0.13 1.66 6.61 -84.87 -0.56 1.10 16 29 N -0.47 -5.50 10.19 -7.25 -0.07 -5.58 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.15 1.13 6.00 -52.48 -0.31 0.82 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.54 6.06 -51.93 -0.31 0.23 16 36 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.38 10.06 7.67 -40.82 -0.31 9.74 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 43 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.14 2.02 6.24 -52.49 -0.33 1.69 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -34.19 385.55 -10.71 -44.91 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.70 Total: 6.71 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -4.63 Total: -4.68 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.25 Total: -60.40 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.19 -10.71 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662717371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.001 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds