Wall clock time and date at job start Tue Mar 31 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39315 * 119.06650 * 2 1 4 4 C 1.38849 * 119.58075 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.10893 * 180.02562 * 4 3 2 6 6 O 1.21544 * 120.00034 * 227.25006 * 5 4 3 7 7 N 1.34780 * 120.00183 * 47.25381 * 5 4 3 8 8 C 1.47023 * 125.64545 * 355.14741 * 7 5 4 9 9 C 1.54323 * 107.27146 * 178.90771 * 8 7 5 10 10 C 1.55154 * 103.10004 * 337.71906 * 9 8 7 11 11 H 1.09003 * 110.99996 * 277.51426 * 10 9 8 12 12 C 1.52999 * 111.00360 * 153.66752 * 10 9 8 13 13 N 1.46508 * 109.47116 * 174.99889 * 12 10 9 14 14 C 1.36930 * 119.99932 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00664 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99690 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00126 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99684 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47290 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46997 * 120.00409 * 18 16 14 21 21 H 1.48504 * 109.46840 * 240.00161 * 18 16 14 22 22 C 1.47420 * 125.64852 * 175.10759 * 7 5 4 23 23 C 1.41818 * 117.77775 * 0.26975 * 4 3 2 24 24 C 1.40106 * 121.36900 * 179.68277 * 23 4 3 25 25 C 1.36255 * 119.64081 * 180.02562 * 24 23 4 26 26 C 1.39342 * 120.83537 * 0.02562 * 25 24 23 27 27 C 1.36072 * 121.05098 * 359.40496 * 26 25 24 28 28 C 1.40708 * 119.73658 * 0.89899 * 27 26 25 29 29 N 1.30972 * 119.05680 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47008 * 89.99830 * 1 2 3 31 31 H 1.08993 * 109.47679 * 210.00394 * 1 2 3 32 32 H 1.09004 * 109.46647 * 330.00414 * 1 2 3 33 33 H 1.08007 * 120.20496 * 0.04319 * 3 2 1 34 34 H 1.09000 * 109.88364 * 59.48821 * 8 7 5 35 35 H 1.09006 * 109.88049 * 298.32665 * 8 7 5 36 36 H 1.08994 * 110.72382 * 96.16727 * 9 8 7 37 37 H 1.09000 * 110.72165 * 219.26793 * 9 8 7 38 38 H 1.09002 * 109.46956 * 294.99318 * 12 10 9 39 39 H 1.09000 * 109.47309 * 54.99776 * 12 10 9 40 40 H 0.97003 * 119.99538 * 359.97438 * 13 12 10 41 41 H 0.97001 * 119.99764 * 179.97438 * 17 16 14 42 42 H 1.08993 * 110.36996 * 322.99787 * 22 7 5 43 43 H 1.09001 * 110.36640 * 85.21778 * 22 7 5 44 44 H 1.07996 * 120.17610 * 0.07151 * 24 23 4 45 45 H 1.07998 * 119.57697 * 179.97438 * 25 24 23 46 46 H 1.08002 * 119.47598 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.12945 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2302 -0.0005 5 6 4.3250 2.5033 0.0000 6 8 5.2491 2.6633 -0.7732 7 7 3.9864 3.4861 0.8580 8 6 2.8349 3.4666 1.7718 9 6 2.8641 4.7847 2.5738 10 6 4.3485 5.2246 2.4735 11 1 4.9592 4.7111 3.2163 12 6 4.4813 6.7425 2.6123 13 7 5.8997 7.1089 2.6326 14 6 6.2657 8.4231 2.7498 15 1 5.5089 9.1897 2.8268 16 6 7.6097 8.7702 2.7696 17 7 8.5320 7.8360 2.6753 18 14 8.1090 10.5632 2.9288 19 1 6.8923 11.4100 3.0161 20 1 8.9266 10.7423 4.1555 21 1 8.9052 10.9626 1.7406 22 6 4.7098 4.7582 1.0360 23 6 4.2444 -0.0186 -0.0070 24 6 5.6434 -0.0938 -0.0146 25 6 6.2527 -1.3125 -0.0211 26 6 5.5020 -2.4864 -0.0209 27 6 4.1419 -2.4497 -0.0021 28 6 3.4771 -1.2095 -0.0016 29 7 2.1431 -1.1449 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5138 33 1 1.6319 2.1461 0.0007 34 1 2.9148 2.6177 2.4508 35 1 1.9091 3.4008 1.2002 36 1 2.2100 5.5280 2.1181 37 1 2.5828 4.6106 3.6124 38 1 3.9926 7.2286 1.7678 39 1 4.0093 7.0652 3.5403 40 1 6.5794 6.4203 2.5631 41 1 9.4711 8.0786 2.6887 42 1 5.7844 4.5991 0.9481 43 1 4.3743 5.4913 0.3024 44 1 6.2356 0.8093 -0.0145 45 1 7.3312 -1.3692 -0.0274 46 1 6.0078 -3.4406 -0.0266 47 1 3.5747 -3.3688 -0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662717371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:01 Heat of formation + Delta-G solvation = 13.334923 kcal Electronic energy + Delta-G solvation = -28585.659037 eV Core-core repulsion = 24732.469511 eV Total energy + Delta-G solvation = -3853.189526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31365 -40.89602 -38.94254 -38.39956 -36.49366 -34.79421 -33.84145 -33.02179 -32.12282 -31.16321 -30.03392 -28.77084 -27.46707 -25.96039 -24.81874 -23.84978 -23.56723 -23.23964 -21.45620 -20.53029 -19.30777 -19.07683 -18.60376 -18.30826 -17.26176 -17.09749 -16.55896 -16.42094 -15.87300 -15.73578 -15.52650 -15.35872 -15.12311 -15.08293 -14.89234 -14.43263 -14.17959 -14.00847 -13.92509 -13.88104 -13.49584 -13.13648 -13.04769 -13.02563 -12.79991 -12.59025 -12.41192 -12.35549 -12.21343 -12.13409 -11.92882 -11.75103 -11.65015 -11.57916 -11.49172 -10.96407 -10.55506 -9.86693 -9.75965 -9.33916 -9.01072 -7.95959 -5.25129 -0.94376 -0.30571 0.61559 1.39364 1.46550 1.47732 1.57687 1.68847 1.88983 2.55161 2.95785 3.05442 3.13700 3.37716 3.46898 3.56492 3.56674 3.62247 3.77291 3.83584 4.00464 4.09966 4.16218 4.22337 4.31217 4.35779 4.37759 4.44944 4.52396 4.64094 4.65962 4.77214 4.80903 4.83760 4.86534 4.96040 4.96804 5.01101 5.03939 5.11433 5.16556 5.21625 5.30842 5.38956 5.41247 5.48524 5.50125 5.79651 6.25472 6.26169 6.78102 6.78775 7.32018 8.08292 8.29379 9.27995 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002449 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.131077 B =11428.993126 C =12687.785017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.154 3.846 3 C -0.126 4.126 4 C -0.076 4.076 5 C 0.568 3.432 6 O -0.572 6.572 7 N -0.605 5.605 8 C 0.092 3.908 9 C -0.111 4.111 10 C -0.097 4.097 11 H 0.074 0.926 12 C 0.164 3.836 13 N -0.750 5.750 14 C -0.241 4.241 15 H 0.081 0.919 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.297 1.297 22 C 0.119 3.881 23 C -0.095 4.095 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.089 4.089 27 C -0.101 4.101 28 C 0.115 3.885 29 N -0.477 5.477 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.169 0.831 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.970 -21.808 -3.035 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.146 4.146 4 C -0.087 4.087 5 C 0.357 3.643 6 O -0.452 6.452 7 N -0.337 5.337 8 C -0.029 4.029 9 C -0.149 4.149 10 C -0.116 4.116 11 H 0.092 0.908 12 C 0.038 3.962 13 N -0.392 5.392 14 C -0.373 4.373 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.224 1.224 22 C -0.003 4.003 23 C -0.097 4.097 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.006 4.006 29 N -0.187 5.187 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.129 0.871 45 H 0.167 0.833 46 H 0.187 0.813 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.928 -22.420 -3.459 30.195 hybrid contribution 2.116 1.807 -0.183 2.789 sum -17.811 -20.612 -3.642 27.484 Atomic orbital electron populations 1.20938 0.84915 1.05468 1.04689 1.22079 0.99132 0.86815 0.91906 1.22616 0.91972 1.01485 0.98572 1.20231 0.95169 0.91751 1.01513 1.18128 0.83095 0.83085 0.79974 1.90797 1.31912 1.81639 1.40824 1.48528 1.29765 1.16927 1.38474 1.22574 0.88337 0.99793 0.92176 1.22689 0.93951 0.95756 1.02462 1.22496 0.98785 0.95936 0.94423 0.90781 1.20772 0.85047 0.91749 0.98664 1.42659 1.02747 1.05074 1.88727 1.19703 0.91516 0.85831 1.40233 0.90117 1.25619 0.96064 1.01660 1.03877 1.69841 0.99719 1.33261 1.59528 0.85060 0.78086 0.80014 0.76531 1.18596 1.22070 1.22420 1.22266 0.95999 0.84188 0.97851 1.18774 0.95192 0.92898 1.02856 1.21189 0.93223 0.99578 1.00036 1.21340 1.01903 0.91688 0.97806 1.21340 0.93421 0.99622 0.96484 1.21132 0.94877 0.96030 0.99880 1.19095 0.89246 0.93106 0.99196 1.67725 1.08328 1.29766 1.12883 0.88777 0.89740 0.87525 0.80913 0.90214 0.87685 0.88335 0.87214 0.95363 0.94426 0.79758 0.94143 0.93805 0.91347 0.87056 0.83324 0.81315 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.14 71.23 0.72 -0.13 16 2 C 0.15 2.65 6.78 42.95 0.29 2.94 16 3 C -0.13 -2.32 8.25 22.68 0.19 -2.14 16 4 C -0.08 -2.01 5.47 -19.68 -0.11 -2.11 16 5 C 0.57 18.26 6.94 86.80 0.60 18.86 16 6 O -0.57 -23.52 15.61 -3.85 -0.06 -23.58 16 7 N -0.61 -16.84 3.33 -814.16 -2.71 -19.55 16 8 C 0.09 1.61 5.66 86.73 0.49 2.10 16 9 C -0.11 -1.97 6.41 31.78 0.20 -1.77 16 10 C -0.10 -2.85 3.07 -9.23 -0.03 -2.87 16 11 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 12 C 0.16 6.05 5.73 86.38 0.49 6.54 16 13 N -0.75 -37.81 5.56 -343.43 -1.91 -39.72 16 14 C -0.24 -13.40 9.99 84.04 0.84 -12.56 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 17 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 18 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 C 0.12 3.98 6.33 87.03 0.55 4.53 16 23 C -0.09 -2.62 5.76 -21.09 -0.12 -2.74 16 24 C -0.12 -3.41 9.20 22.26 0.20 -3.20 16 25 C -0.11 -2.27 9.96 22.07 0.22 -2.05 16 26 C -0.09 -1.43 9.94 22.03 0.22 -1.22 16 27 C -0.10 -1.88 9.99 22.37 0.22 -1.66 16 28 C 0.11 2.77 6.61 40.33 0.27 3.04 16 29 N -0.48 -10.47 10.19 -176.85 -1.80 -12.28 16 30 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 0.32 8.07 -2.38 -0.02 0.30 16 33 H 0.17 2.02 6.00 -2.91 -0.02 2.01 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.14 6.06 -2.38 -0.01 1.13 16 36 H 0.10 1.48 8.04 -2.39 -0.02 1.46 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 43 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 44 H 0.11 3.69 6.24 -2.91 -0.02 3.67 16 45 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -79.91 385.55 1.84 -78.07 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.28 Total: 27.79 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.73 Total: 1.36 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -6.14 Total: -132.23 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -79.91 1.84 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662717371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -79.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds