Wall clock time and date at job start Tue Mar 31 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38352 * 120.34435 * 2 1 4 4 N 1.31931 * 121.07506 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.88047 * 359.68270 * 4 3 2 6 6 C 1.39518 * 120.56640 * 0.58579 * 5 4 3 7 7 C 1.47842 * 120.55920 * 179.72860 * 6 5 4 8 8 O 1.21553 * 120.00066 * 179.71771 * 7 6 5 9 9 N 1.34777 * 120.00010 * 359.72068 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27787 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.38237 * 119.99855 * 269.71968 * 11 10 9 13 13 C 1.38234 * 120.00010 * 179.77103 * 12 11 10 14 14 C 1.38235 * 119.99828 * 0.48492 * 13 12 11 15 15 C 1.50700 * 120.00111 * 179.77105 * 14 13 12 16 16 C 1.52998 * 109.47338 * 270.02590 * 15 14 13 17 17 N 1.46491 * 109.47426 * 179.97438 * 16 15 14 18 18 C 1.36943 * 120.00230 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99499 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47294 * 119.99869 * 22 20 18 25 25 H 1.48501 * 109.47011 * 239.99635 * 22 20 18 26 26 C 1.38232 * 119.99976 * 359.78971 * 14 13 12 27 27 C 1.38232 * 120.00339 * 359.96267 * 26 14 13 28 28 C 1.38355 * 120.34950 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46826 * 269.97050 * 1 2 3 30 30 H 1.08997 * 109.47550 * 29.97206 * 1 2 3 31 31 H 1.08997 * 109.46978 * 149.97829 * 1 2 3 32 32 H 1.08000 * 119.46559 * 0.02914 * 3 2 1 33 33 H 1.08003 * 119.72026 * 180.28669 * 5 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 36 36 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 37 37 H 1.08000 * 119.99739 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.00050 * 180.25519 * 13 12 11 39 39 H 1.09004 * 109.46780 * 30.02398 * 15 14 13 40 40 H 1.08994 * 109.47121 * 150.02109 * 15 14 13 41 41 H 1.09004 * 109.46552 * 299.99891 * 16 15 14 42 42 H 1.09000 * 109.47098 * 59.99037 * 16 15 14 43 43 H 0.97005 * 119.99981 * 359.97438 * 17 16 15 44 44 H 0.97004 * 120.00399 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00137 * 179.97438 * 26 14 13 46 46 H 1.08002 * 120.00459 * 179.97438 * 27 26 14 47 47 H 1.07998 * 120.85653 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 0.0052 6 6 3.6054 -1.1436 -0.0003 7 6 4.4024 -2.3888 0.0000 8 8 3.8434 -3.4681 0.0004 9 7 5.7487 -2.3272 0.0000 10 6 6.5384 -3.5611 -0.0059 11 6 8.0059 -3.2182 -0.0115 12 6 8.6751 -3.0643 -1.2113 13 6 10.0200 -2.7451 -1.2166 14 6 10.6982 -2.5897 -0.0221 15 6 12.1656 -2.2468 -0.0277 16 6 12.9905 -3.5354 -0.0339 17 7 14.4170 -3.2021 -0.0400 18 6 15.3536 -4.2012 -0.0456 19 1 15.0405 -5.2348 -0.0459 20 6 16.7053 -3.8853 -0.0509 21 7 17.0867 -2.6257 -0.0510 22 14 17.9828 -5.2481 -0.0578 23 1 17.2999 -6.5668 -0.0559 24 1 18.8270 -5.1291 -1.2737 25 1 18.8371 -5.1318 1.1512 26 6 10.0303 -2.7492 1.1777 27 6 8.6842 -3.0633 1.1830 28 6 2.2061 -1.1939 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6629 2.1275 0.0005 33 1 5.3135 0.1560 0.0092 34 1 6.1948 -1.4658 -0.0007 35 1 6.3053 -4.1458 0.8841 36 1 6.2977 -4.1424 -0.8959 37 1 8.1461 -3.1894 -2.1445 38 1 10.5419 -2.6209 -2.1539 39 1 12.3986 -1.6621 -0.9177 40 1 12.4064 -1.6655 0.8623 41 1 12.7574 -4.1201 0.8561 42 1 12.7496 -4.1167 -0.9239 43 1 14.6981 -2.2737 -0.0401 44 1 18.0313 -2.4049 -0.0543 45 1 10.5602 -2.6282 2.1109 46 1 8.1624 -3.1883 2.1203 47 1 1.6859 -2.1404 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662801064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:18 Heat of formation + Delta-G solvation = 22.810465 kcal Electronic energy + Delta-G solvation = -26509.337571 eV Core-core repulsion = 22656.558936 eV Total energy + Delta-G solvation = -3852.778635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15339 -39.86956 -39.13571 -35.92519 -34.89789 -34.18715 -33.09981 -32.43735 -30.97483 -30.86019 -28.65206 -27.82884 -26.11399 -24.49297 -23.37383 -23.24332 -22.76691 -21.61565 -20.89327 -20.49264 -18.41414 -17.43837 -17.25244 -17.09817 -16.04198 -15.98869 -15.68471 -15.33036 -15.11967 -14.66776 -14.64840 -14.62383 -13.85973 -13.67776 -13.61169 -13.56095 -13.44987 -13.28877 -13.27187 -13.15795 -12.74257 -12.59815 -12.47876 -12.34187 -11.25311 -11.23119 -11.12470 -10.90943 -10.71161 -10.69971 -10.62120 -10.33626 -10.04881 -9.94607 -9.73360 -9.62424 -9.42961 -8.96639 -8.87542 -8.60542 -6.93699 -5.77612 -3.06593 0.10865 0.64268 1.14490 1.37761 2.39998 2.75991 3.31369 3.43005 3.48727 3.51028 3.71345 3.77754 4.12312 4.24339 4.31077 4.38143 4.43601 4.57876 4.59259 4.71914 4.91269 4.94655 5.00677 5.01511 5.09063 5.10644 5.35124 5.39332 5.46068 5.48818 5.51478 5.58792 5.62641 5.74622 5.83112 5.89177 5.92443 6.02126 6.05546 6.18050 6.26338 6.42665 6.45572 6.59153 6.79930 6.91403 6.96333 7.03071 7.30766 7.70093 7.72128 8.41261 9.52481 10.09669 10.44532 11.45382 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.001468 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.873703 B =19073.761850 C =19600.216710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.482 5.482 5 C 0.129 3.871 6 C -0.182 4.182 7 C 0.563 3.437 8 O -0.535 6.535 9 N -0.718 5.718 10 C 0.166 3.834 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.118 4.118 14 C -0.050 4.050 15 C -0.095 4.095 16 C 0.161 3.839 17 N -0.734 5.734 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.118 4.118 27 C -0.098 4.098 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.402 0.598 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.580 7.079 0.160 35.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C -0.036 4.036 4 N -0.189 5.189 5 C -0.030 4.030 6 C -0.187 4.187 7 C 0.349 3.651 8 O -0.412 6.412 9 N -0.370 5.370 10 C 0.044 3.956 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.136 4.136 14 C -0.051 4.051 15 C -0.133 4.133 16 C 0.033 3.967 17 N -0.379 5.379 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.045 4.045 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.238 0.762 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -34.452 6.908 0.157 35.138 hybrid contribution 0.818 -0.821 -0.002 1.159 sum -33.634 6.087 0.155 34.181 Atomic orbital electron populations 1.20754 0.89456 1.03585 1.03036 1.20975 0.98155 0.93705 1.01843 1.22963 0.89897 0.97817 0.92947 1.67720 1.08088 1.30895 1.12240 1.22994 1.00342 0.86823 0.92824 1.20999 0.95190 0.94727 1.07781 1.18046 0.82079 0.88426 0.76565 1.90796 1.71106 1.29620 1.49711 1.46052 1.05566 1.10416 1.74922 1.20205 0.86285 0.85865 1.03275 1.19679 0.94547 1.04975 0.93870 1.21018 0.94578 0.98877 0.97149 1.21131 0.94102 1.00203 0.98171 1.20099 0.96110 0.95941 0.92941 1.20881 0.89526 0.99636 1.03226 1.20584 0.85006 0.93014 0.98058 1.42379 0.99158 1.06742 1.89584 1.19286 0.86776 0.88451 1.42546 0.91109 1.24745 0.97017 0.96242 1.03006 1.69670 1.15082 1.15603 1.57893 0.86108 0.81784 0.81069 0.77205 1.20523 1.21829 1.21834 1.21129 0.94145 1.00216 0.98117 1.21018 0.94506 0.98893 0.97205 1.21652 0.92418 0.99102 0.91368 0.90515 0.90793 0.90918 0.82160 0.82380 0.76204 0.90385 0.90394 0.86129 0.85655 0.90745 0.90746 0.96242 0.96248 0.78276 0.93550 0.85656 0.86125 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.34 10.03 36.01 0.36 0.02 16 2 C -0.14 -0.84 5.89 -104.54 -0.62 -1.46 16 3 C 0.12 0.76 10.85 -17.47 -0.19 0.57 16 4 N -0.48 -4.01 10.35 -12.91 -0.13 -4.14 16 5 C 0.13 0.97 10.71 -17.13 -0.18 0.78 16 6 C -0.18 -1.50 5.89 -104.82 -0.62 -2.11 16 7 C 0.56 5.48 7.78 -12.33 -0.10 5.38 16 8 O -0.53 -6.96 16.42 5.32 0.09 -6.87 16 9 N -0.72 -5.73 5.50 -62.43 -0.34 -6.07 16 10 C 0.17 1.46 5.80 -5.19 -0.03 1.43 16 11 C -0.13 -1.26 5.25 -104.62 -0.55 -1.81 16 12 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 13 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 14 C -0.05 -0.67 5.13 -104.63 -0.54 -1.21 16 15 C -0.10 -1.50 5.46 -27.88 -0.15 -1.66 16 16 C 0.16 3.25 6.24 -4.05 -0.03 3.23 16 17 N -0.73 -18.77 5.60 -59.91 -0.34 -19.11 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C -0.12 -1.42 9.70 -39.59 -0.38 -1.80 16 27 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 28 C -0.02 -0.14 9.39 -38.87 -0.37 -0.51 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 31 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 32 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.16 0.84 6.42 -52.48 -0.34 0.50 16 34 H 0.40 2.48 6.53 -40.82 -0.27 2.22 16 35 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 40 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.15 1.04 7.74 -52.49 -0.41 0.63 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -34.34 402.27 -10.52 -44.85 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.77 Total: 6.55 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -4.78 Total: -11.15 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.09 Total: -56.93 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.09 Total: -6.87 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.34 -10.52 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662801064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.664 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds