Wall clock time and date at job start Tue Mar 31 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38352 * 120.34435 * 2 1 4 4 N 1.31931 * 121.07506 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.88047 * 359.68270 * 4 3 2 6 6 C 1.39518 * 120.56640 * 0.58579 * 5 4 3 7 7 C 1.47842 * 120.55920 * 179.72860 * 6 5 4 8 8 O 1.21553 * 120.00066 * 179.71771 * 7 6 5 9 9 N 1.34777 * 120.00010 * 359.72068 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27787 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 C 1.38237 * 119.99855 * 269.71968 * 11 10 9 13 13 C 1.38234 * 120.00010 * 179.77103 * 12 11 10 14 14 C 1.38235 * 119.99828 * 0.48492 * 13 12 11 15 15 C 1.50700 * 120.00111 * 179.77105 * 14 13 12 16 16 C 1.52998 * 109.47338 * 270.02590 * 15 14 13 17 17 N 1.46491 * 109.47426 * 179.97438 * 16 15 14 18 18 C 1.36943 * 120.00230 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99499 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47294 * 119.99869 * 22 20 18 25 25 H 1.48501 * 109.47011 * 239.99635 * 22 20 18 26 26 C 1.38232 * 119.99976 * 359.78971 * 14 13 12 27 27 C 1.38232 * 120.00339 * 359.96267 * 26 14 13 28 28 C 1.38355 * 120.34950 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46826 * 269.97050 * 1 2 3 30 30 H 1.08997 * 109.47550 * 29.97206 * 1 2 3 31 31 H 1.08997 * 109.46978 * 149.97829 * 1 2 3 32 32 H 1.08000 * 119.46559 * 0.02914 * 3 2 1 33 33 H 1.08003 * 119.72026 * 180.28669 * 5 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 36 36 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 37 37 H 1.08000 * 119.99739 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.00050 * 180.25519 * 13 12 11 39 39 H 1.09004 * 109.46780 * 30.02398 * 15 14 13 40 40 H 1.08994 * 109.47121 * 150.02109 * 15 14 13 41 41 H 1.09004 * 109.46552 * 299.99891 * 16 15 14 42 42 H 1.09000 * 109.47098 * 59.99037 * 16 15 14 43 43 H 0.97005 * 119.99981 * 359.97438 * 17 16 15 44 44 H 0.97004 * 120.00399 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00137 * 179.97438 * 26 14 13 46 46 H 1.08002 * 120.00459 * 179.97438 * 27 26 14 47 47 H 1.07998 * 120.85653 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 0.0052 6 6 3.6054 -1.1436 -0.0003 7 6 4.4024 -2.3888 0.0000 8 8 3.8434 -3.4681 0.0004 9 7 5.7487 -2.3272 0.0000 10 6 6.5384 -3.5611 -0.0059 11 6 8.0059 -3.2182 -0.0115 12 6 8.6751 -3.0643 -1.2113 13 6 10.0200 -2.7451 -1.2166 14 6 10.6982 -2.5897 -0.0221 15 6 12.1656 -2.2468 -0.0277 16 6 12.9905 -3.5354 -0.0339 17 7 14.4170 -3.2021 -0.0400 18 6 15.3536 -4.2012 -0.0456 19 1 15.0405 -5.2348 -0.0459 20 6 16.7053 -3.8853 -0.0509 21 7 17.0867 -2.6257 -0.0510 22 14 17.9828 -5.2481 -0.0578 23 1 17.2999 -6.5668 -0.0559 24 1 18.8270 -5.1291 -1.2737 25 1 18.8371 -5.1318 1.1512 26 6 10.0303 -2.7492 1.1777 27 6 8.6842 -3.0633 1.1830 28 6 2.2061 -1.1939 -0.0005 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6629 2.1275 0.0005 33 1 5.3135 0.1560 0.0092 34 1 6.1948 -1.4658 -0.0007 35 1 6.3053 -4.1458 0.8841 36 1 6.2977 -4.1424 -0.8959 37 1 8.1461 -3.1894 -2.1445 38 1 10.5419 -2.6209 -2.1539 39 1 12.3986 -1.6621 -0.9177 40 1 12.4064 -1.6655 0.8623 41 1 12.7574 -4.1201 0.8561 42 1 12.7496 -4.1167 -0.9239 43 1 14.6981 -2.2737 -0.0401 44 1 18.0313 -2.4049 -0.0543 45 1 10.5602 -2.6282 2.1109 46 1 8.1624 -3.1883 2.1203 47 1 1.6859 -2.1404 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662801064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:18 Heat of formation + Delta-G solvation = 1.824777 kcal Electronic energy + Delta-G solvation = -26510.247579 eV Core-core repulsion = 22656.558936 eV Total energy + Delta-G solvation = -3853.688643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75222 -40.66492 -39.93501 -37.23698 -36.14929 -34.73537 -34.30843 -33.34462 -32.37370 -31.84899 -29.92842 -28.25003 -27.24107 -25.65897 -24.64476 -23.78699 -23.64501 -23.10460 -21.63740 -21.47936 -19.23240 -19.03491 -18.01284 -17.73933 -16.91200 -16.89678 -16.61183 -16.46712 -16.17211 -15.93457 -15.43775 -15.29756 -15.22247 -15.07379 -14.93494 -14.36930 -14.28820 -14.15062 -13.75665 -13.73560 -13.53844 -13.51880 -13.46021 -12.96819 -12.89974 -12.81988 -12.52021 -12.37780 -12.11702 -12.02697 -11.80945 -11.69466 -11.46875 -10.96998 -10.91564 -10.52563 -10.28201 -9.96366 -9.82500 -9.57319 -9.03531 -7.97583 -5.27281 -0.44397 0.12978 0.24307 0.50172 1.46961 1.47671 1.58099 1.72593 2.04824 2.54434 2.76165 2.85995 3.26671 3.36254 3.60357 3.63504 3.76775 3.80096 3.83670 3.87294 3.90618 4.13894 4.17037 4.17460 4.37479 4.44853 4.47120 4.49001 4.56046 4.68215 4.74370 4.75736 4.77921 4.82467 4.94093 5.06048 5.10889 5.15372 5.22054 5.23092 5.24971 5.26817 5.45161 5.49409 5.56836 5.60682 5.78201 6.06208 6.25043 6.36095 6.79476 7.02141 7.31190 8.05557 8.29905 9.26072 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.001468 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.873703 B =19073.761850 C =19600.216710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.505 5.505 5 C 0.126 3.874 6 C -0.194 4.194 7 C 0.565 3.435 8 O -0.573 6.573 9 N -0.707 5.707 10 C 0.170 3.830 11 C -0.117 4.117 12 C -0.095 4.095 13 C -0.126 4.126 14 C -0.070 4.070 15 C -0.080 4.080 16 C 0.162 3.838 17 N -0.747 5.747 18 C -0.250 4.250 19 H 0.074 0.926 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.126 4.126 27 C -0.095 4.095 28 C -0.032 4.032 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.188 0.812 33 H 0.175 0.825 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.375 0.625 44 H 0.252 0.748 45 H 0.127 0.873 46 H 0.141 0.859 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.547 7.110 0.166 37.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.039 4.039 4 N -0.213 5.213 5 C -0.032 4.032 6 C -0.199 4.199 7 C 0.352 3.648 8 O -0.454 6.454 9 N -0.358 5.358 10 C 0.047 3.953 11 C -0.117 4.117 12 C -0.113 4.113 13 C -0.144 4.144 14 C -0.071 4.071 15 C -0.117 4.117 16 C 0.035 3.965 17 N -0.390 5.390 18 C -0.381 4.381 19 H 0.092 0.908 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.803 3.197 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.144 4.144 27 C -0.113 4.113 28 C -0.059 4.059 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.205 0.795 33 H 0.192 0.808 34 H 0.250 0.750 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.207 0.793 44 H 0.061 0.939 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -36.439 6.941 0.163 37.095 hybrid contribution 1.275 -0.807 -0.002 1.509 sum -35.164 6.134 0.161 35.696 Atomic orbital electron populations 1.20831 0.87382 1.04588 1.03897 1.21241 0.99574 0.92848 1.00457 1.23468 0.89534 0.99118 0.91796 1.67766 1.09190 1.31199 1.13152 1.23212 1.01166 0.86379 0.92483 1.20930 0.95477 0.94280 1.09233 1.18256 0.82392 0.88388 0.75757 1.90773 1.71833 1.30999 1.51764 1.45934 1.05116 1.10731 1.74062 1.20140 0.85604 0.86125 1.03392 1.19757 0.94835 1.03596 0.93556 1.21212 0.93882 0.97962 0.98262 1.21219 0.94944 1.00425 0.97778 1.19911 0.94673 0.98305 0.94173 1.20642 0.90826 0.97241 1.03033 1.20699 0.82959 0.95322 0.97497 1.42597 1.01072 1.05865 1.89498 1.19673 0.87707 0.89211 1.41531 0.90810 1.25582 0.99046 0.98529 1.03428 1.69819 1.15203 1.17549 1.59342 0.85058 0.78971 0.78823 0.76817 1.19119 1.21808 1.21816 1.21218 0.94996 1.00433 0.97718 1.21211 0.93799 0.97969 0.98325 1.21820 0.92433 0.99828 0.91789 0.89590 0.89088 0.90659 0.79528 0.80804 0.75011 0.90347 0.90366 0.84176 0.85493 0.90958 0.90956 0.96458 0.96468 0.79304 0.93877 0.85489 0.84162 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.03 71.24 0.71 0.28 16 2 C -0.14 -1.40 5.89 -19.81 -0.12 -1.51 16 3 C 0.12 1.26 10.85 84.71 0.92 2.18 16 4 N -0.51 -7.70 10.35 -194.75 -2.01 -9.71 16 5 C 0.13 1.75 10.71 85.02 0.91 2.66 16 6 C -0.19 -3.06 5.89 -19.99 -0.12 -3.18 16 7 C 0.56 10.60 7.78 86.79 0.68 11.28 16 8 O -0.57 -14.83 16.42 -3.88 -0.06 -14.89 16 9 N -0.71 -10.22 5.50 -469.72 -2.58 -12.81 16 10 C 0.17 2.68 5.80 85.63 0.50 3.18 16 11 C -0.12 -2.02 5.25 -19.86 -0.10 -2.12 16 12 C -0.09 -1.75 9.70 22.27 0.22 -1.54 16 13 C -0.13 -2.88 9.70 22.27 0.22 -2.67 16 14 C -0.07 -1.82 5.13 -19.87 -0.10 -1.92 16 15 C -0.08 -2.54 5.46 29.85 0.16 -2.38 16 16 C 0.16 6.59 6.24 86.38 0.54 7.13 16 17 N -0.75 -38.80 5.60 -343.47 -1.92 -40.72 16 18 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 22 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 C -0.13 -2.88 9.70 22.27 0.22 -2.67 16 27 C -0.09 -1.75 9.70 22.27 0.22 -1.53 16 28 C -0.03 -0.46 9.39 22.73 0.21 -0.25 16 29 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.09 0.07 8.09 -2.39 -0.02 0.05 16 31 H 0.07 0.28 8.09 -2.39 -0.02 0.26 16 32 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.18 1.60 6.42 -2.91 -0.02 1.58 16 34 H 0.41 4.33 6.53 -92.71 -0.61 3.72 16 35 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 36 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.07 2.30 8.09 -2.38 -0.02 2.28 16 40 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 41 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.37 20.43 7.67 -92.70 -0.71 19.72 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 46 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 47 H 0.15 2.05 7.74 -2.91 -0.02 2.02 16 Total: -1.00 -73.72 402.27 1.76 -71.96 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.32 Total: 27.30 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 6.36 Total: -10.25 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -6.24 Total: -122.55 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.06 Total: -14.89 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.72 1.76 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662801064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.784 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds