Wall clock time and date at job start Tue Mar 31 2020 22:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38623 * 120.75630 * 2 1 4 4 C 1.38563 * 119.35043 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.54791 * 180.02562 * 4 3 2 6 6 N 1.31518 * 120.90189 * 359.97438 * 4 3 2 7 7 C 1.32720 * 121.64440 * 359.77130 * 6 4 3 8 8 C 1.48173 * 119.72232 * 180.24378 * 7 6 4 9 9 O 1.21508 * 119.99800 * 180.24298 * 8 7 6 10 10 N 1.34776 * 120.00191 * 0.25136 * 8 7 6 11 11 C 1.46492 * 119.99957 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47040 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47409 * 64.99920 * 12 11 10 14 14 N 1.46509 * 109.47012 * 304.99808 * 12 11 10 15 15 C 1.36936 * 119.99500 * 155.00259 * 14 12 11 16 16 H 1.07993 * 120.00593 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99237 * 180.02562 * 15 14 12 18 18 N 1.31610 * 120.00533 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99663 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47373 * 89.99945 * 19 17 15 21 21 H 1.48499 * 109.47556 * 209.99874 * 19 17 15 22 22 H 1.48504 * 109.47298 * 330.00028 * 19 17 15 23 23 C 1.50700 * 109.47442 * 184.99999 * 12 11 10 24 24 C 1.38240 * 120.00230 * 79.72227 * 23 12 11 25 25 C 1.38227 * 119.99699 * 179.79242 * 24 23 12 26 26 C 1.38230 * 120.00637 * 0.44057 * 25 24 23 27 27 C 1.38237 * 119.99630 * 359.81518 * 26 25 24 28 28 C 1.38235 * 120.00375 * 359.97438 * 27 26 25 29 29 C 1.38592 * 120.75290 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47182 * 269.97789 * 1 2 3 31 31 H 1.09007 * 109.47034 * 29.97870 * 1 2 3 32 32 H 1.09000 * 109.47527 * 149.97572 * 1 2 3 33 33 H 1.08004 * 120.32625 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47040 * 89.99803 * 5 4 3 35 35 H 1.08996 * 109.47027 * 209.99595 * 5 4 3 36 36 H 1.09005 * 109.47074 * 330.00339 * 5 4 3 37 37 H 0.97006 * 120.00011 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.46941 * 299.99033 * 11 10 8 39 39 H 1.08997 * 109.47714 * 59.99763 * 11 10 8 40 40 H 0.96996 * 119.99549 * 334.99818 * 14 12 11 41 41 H 0.97000 * 120.00570 * 179.97438 * 18 17 15 42 42 H 1.08005 * 119.99462 * 0.02562 * 24 23 12 43 43 H 1.08002 * 119.99592 * 180.27484 * 25 24 23 44 44 H 1.08003 * 120.00297 * 179.83267 * 26 25 24 45 45 H 1.08003 * 119.99852 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00236 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.46872 * 359.94951 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6012 1.1573 -0.0005 5 6 4.3763 2.4497 0.0000 6 7 4.2487 0.0125 -0.0005 7 6 3.6081 -1.1498 0.0045 8 6 4.3805 -2.4143 0.0097 9 8 3.7992 -3.4813 0.0099 10 7 5.7279 -2.3810 0.0145 11 6 6.4915 -3.6311 0.0191 12 6 7.9883 -3.3144 0.0234 13 1 8.2510 -2.8127 0.9547 14 7 8.3057 -2.4402 -1.1087 15 6 9.4012 -1.6203 -1.0544 16 1 10.0309 -1.6178 -0.1770 17 6 9.7016 -0.7917 -2.1268 18 7 8.9339 -0.7943 -3.1958 19 14 11.1955 0.3273 -2.0525 20 1 12.3779 -0.3888 -2.5951 21 1 10.9414 1.5467 -2.8611 22 1 11.4550 0.7137 -0.6423 23 6 8.7732 -4.5954 -0.0957 24 6 8.9335 -5.1956 -1.3306 25 6 9.6570 -6.3682 -1.4404 26 6 10.2127 -6.9456 -0.3141 27 6 10.0481 -6.3482 0.9216 28 6 9.3281 -5.1732 1.0309 29 6 2.2157 -1.1910 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6937 2.1366 -0.0004 34 1 4.5635 2.7606 1.0278 35 1 5.3262 2.3038 -0.5142 36 1 3.7997 3.2194 -0.5130 37 1 6.1920 -1.5291 0.0141 38 1 6.2393 -4.2076 0.9091 39 1 6.2456 -4.2105 -0.8708 40 1 7.7399 -2.4423 -1.8965 41 1 9.1436 -0.2150 -3.9450 42 1 8.4964 -4.7462 -2.2102 43 1 9.7860 -6.8348 -2.4059 44 1 10.7758 -7.8633 -0.3995 45 1 10.4819 -6.7995 1.8017 46 1 9.1998 -4.7063 1.9962 47 1 1.6958 -2.1377 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664582936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:28 Heat of formation + Delta-G solvation = 9.491851 kcal Electronic energy + Delta-G solvation = -28495.317432 eV Core-core repulsion = 24641.961258 eV Total energy + Delta-G solvation = -3853.356174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75458 -40.49744 -39.87819 -37.43931 -35.47842 -35.00323 -33.95507 -33.40710 -31.70798 -31.19284 -29.26481 -28.96714 -28.29180 -26.13719 -25.13385 -23.86340 -23.19773 -22.25996 -21.51889 -21.23492 -19.38215 -18.74209 -17.82546 -17.58417 -17.00291 -16.87373 -16.68358 -16.41327 -15.97048 -15.73699 -15.59446 -15.38685 -15.04243 -14.72879 -14.45973 -14.19437 -14.12441 -14.07601 -13.84715 -13.74440 -13.43002 -13.40259 -13.10444 -13.05630 -12.90981 -12.78622 -12.58981 -12.46236 -12.16868 -12.02851 -11.83995 -11.64560 -11.44893 -10.99805 -10.53365 -10.50565 -10.22444 -9.92676 -9.68252 -9.53541 -9.03777 -7.91377 -5.21322 -0.38281 0.19762 0.57980 0.64400 1.47668 1.48613 1.56469 1.64406 2.08626 2.56337 2.79120 3.00485 3.06526 3.42631 3.63539 3.68397 3.77513 4.00079 4.01335 4.03195 4.15326 4.20085 4.31378 4.33911 4.38382 4.41367 4.50925 4.61906 4.65704 4.74079 4.77835 4.78424 4.81700 4.82223 4.97480 5.00383 5.13845 5.21122 5.26146 5.27583 5.30025 5.37261 5.53861 5.68025 5.68920 5.72922 5.93759 6.24940 6.28239 6.39834 6.83561 7.09188 7.35479 8.02486 8.29536 9.30927 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.003553 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.611336 B = 7878.640004 C =10290.673399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.141 4.141 4 C 0.114 3.886 5 C -0.103 4.103 6 N -0.489 5.489 7 C 0.063 3.937 8 C 0.562 3.438 9 O -0.573 6.573 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.204 3.796 13 H 0.068 0.932 14 N -0.718 5.718 15 C -0.232 4.232 16 H 0.074 0.926 17 C -0.063 4.063 18 N -0.963 5.963 19 Si 0.964 3.036 20 H -0.294 1.294 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.100 4.100 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.125 4.125 28 C -0.126 4.126 29 C -0.131 4.131 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.133 0.867 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 0.390 9.822 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.026 4.026 5 C -0.160 4.160 6 N -0.202 5.202 7 C -0.074 4.074 8 C 0.348 3.652 9 O -0.453 6.453 10 N -0.341 5.341 11 C 0.004 3.996 12 C 0.095 3.905 13 H 0.086 0.914 14 N -0.357 5.357 15 C -0.363 4.363 16 H 0.092 0.908 17 C -0.255 4.255 18 N -0.614 5.614 19 Si 0.794 3.206 20 H -0.222 1.222 21 H -0.224 1.224 22 H -0.194 1.194 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.145 4.145 29 C -0.152 4.152 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.197 0.803 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.254 0.746 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.151 0.849 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.239 -0.286 9.889 15.737 hybrid contribution 0.347 0.804 -0.947 1.290 sum -11.892 0.518 8.942 14.887 Atomic orbital electron populations 1.20916 0.86678 1.04798 1.04342 1.20762 0.99005 0.91478 0.94100 1.22475 0.93768 1.00441 0.99413 1.21890 0.92735 0.93661 0.94339 1.20826 0.99865 0.91125 1.04188 1.67384 1.42293 0.98390 1.12160 1.20972 0.92427 0.91493 1.02518 1.18289 0.82515 0.88017 0.76368 1.90699 1.70601 1.31133 1.52875 1.45866 1.05569 1.11181 1.71523 1.21555 0.90470 0.85641 1.01915 1.19525 0.90314 0.88404 0.92272 0.91409 1.42458 1.30848 1.45635 1.16793 1.19458 1.02628 1.13827 1.00416 0.90838 1.25374 1.01522 1.02202 0.96434 1.69811 1.41120 1.43419 1.07009 0.85289 0.79578 0.78221 0.77540 1.22179 1.22383 1.19358 1.20817 0.99219 0.96434 0.93864 1.20943 0.99283 0.95505 0.97145 1.21338 0.98428 0.95870 0.99747 1.21398 1.00157 1.00814 0.92387 1.21415 0.98828 0.95530 0.98494 1.21274 0.98509 0.96667 0.98054 1.22111 0.92902 1.00827 0.99375 0.88789 0.88669 0.90479 0.80330 0.88884 0.92338 0.87590 0.74591 0.89838 0.92869 0.79417 0.94251 0.88761 0.85372 0.83661 0.83417 0.84867 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.06 71.24 0.72 -0.53 16 2 C -0.05 -0.91 5.91 -19.69 -0.12 -1.03 16 3 C -0.14 -2.69 9.45 22.44 0.21 -2.47 16 4 C 0.11 2.95 6.78 42.68 0.29 3.24 16 5 C -0.10 -2.11 10.17 71.24 0.72 -1.38 16 6 N -0.49 -16.55 9.45 -173.08 -1.64 -18.19 16 7 C 0.06 2.16 6.75 41.91 0.28 2.44 16 8 C 0.56 21.85 7.81 86.88 0.68 22.53 16 9 O -0.57 -24.02 16.32 -3.74 -0.06 -24.08 16 10 N -0.69 -26.90 5.38 -465.68 -2.50 -29.41 16 11 C 0.13 4.82 5.21 86.38 0.45 5.27 16 12 C 0.20 8.09 2.64 44.24 0.12 8.21 16 13 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 14 N -0.72 -34.99 3.81 -326.48 -1.24 -36.24 16 15 C -0.23 -12.46 9.92 84.03 0.83 -11.62 16 16 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 17 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 18 N -0.96 -58.16 13.06 21.65 0.28 -57.88 16 19 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C -0.10 -3.73 4.92 -19.86 -0.10 -3.83 16 24 C -0.11 -4.27 9.32 22.27 0.21 -4.07 16 25 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 26 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 27 C -0.12 -3.34 10.05 22.27 0.22 -3.11 16 28 C -0.13 -3.94 9.67 22.27 0.22 -3.72 16 29 C -0.13 -3.61 9.34 22.61 0.21 -3.40 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.69 8.10 -2.38 -0.02 0.67 16 32 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.45 8.08 -2.38 -0.02 1.43 16 37 H 0.42 17.21 7.47 -92.70 -0.69 16.52 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.37 20.14 7.80 -92.71 -0.72 19.41 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.09 4.11 7.73 -2.91 -0.02 4.08 16 43 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 45 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 46 H 0.13 3.56 8.04 -2.91 -0.02 3.54 16 47 H 0.15 3.86 7.64 -2.91 -0.02 3.84 16 Total: -1.00 -71.68 402.46 2.30 -69.38 By element: Atomic # 1 Polarization: 52.88 SS G_CDS: -0.42 Total: 52.46 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.86 Total: -3.99 kcal Atomic # 7 Polarization: -136.61 SS G_CDS: -5.10 Total: -141.71 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.68 2.30 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664582936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.873 kcal (2) G-P(sol) polarization free energy of solvation -71.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds