Wall clock time and date at job start Tue Mar 31 2020 22:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38673 * 120.79048 * 2 1 4 4 C 1.38178 * 119.17087 * 180.02562 * 3 2 1 5 5 N 1.31892 * 120.76043 * 0.02562 * 4 3 2 6 6 C 1.31862 * 121.72200 * 359.67886 * 5 4 3 7 7 C 1.38220 * 120.76343 * 0.58667 * 6 5 4 8 8 C 1.50700 * 120.41557 * 179.73109 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.71767 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46716 * 64.99947 * 13 12 11 15 15 N 1.46496 * 109.47141 * 305.00435 * 13 12 11 16 16 C 1.36944 * 120.00042 * 154.99672 * 15 13 12 17 17 H 1.07996 * 119.99561 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99744 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47383 * 59.99638 * 20 18 16 22 22 H 1.48504 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47110 * 299.99632 * 20 18 16 24 24 C 1.50699 * 109.47491 * 184.99902 * 13 12 11 25 25 C 1.38234 * 119.99433 * 79.72824 * 24 13 12 26 26 C 1.38237 * 119.99973 * 179.78727 * 25 24 13 27 27 C 1.38244 * 119.99632 * 0.44690 * 26 25 24 28 28 C 1.38228 * 120.00097 * 359.80587 * 27 26 25 29 29 C 1.38228 * 120.00215 * 260.00286 * 24 13 12 30 30 H 1.09000 * 109.47717 * 269.97872 * 1 2 3 31 31 H 1.09005 * 109.47459 * 29.98054 * 1 2 3 32 32 H 1.09001 * 109.47001 * 149.97610 * 1 2 3 33 33 H 1.08006 * 120.41934 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.62715 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.61199 * 180.29594 * 6 5 4 36 36 H 1.09004 * 109.47210 * 144.72060 * 8 7 6 37 37 H 1.08994 * 109.47551 * 24.71712 * 8 7 6 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 40 40 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 41 41 H 0.96998 * 120.00378 * 334.99902 * 15 13 12 42 42 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00442 * 0.02562 * 25 24 13 44 44 H 1.07995 * 120.00942 * 180.27250 * 26 25 24 45 45 H 1.08002 * 119.99728 * 179.83819 * 27 26 25 46 46 H 1.08002 * 120.00338 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00605 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5983 -1.1515 0.0042 7 6 2.2166 -1.1908 -0.0006 8 6 1.4909 -2.5116 -0.0001 9 6 1.1394 -2.8921 -1.4153 10 8 1.4482 -2.1629 -2.3339 11 7 0.4872 -4.0457 -1.6607 12 6 0.1508 -4.4186 -3.0369 13 6 -0.5816 -5.7619 -3.0369 14 1 -1.5381 -5.6541 -2.5253 15 7 0.2331 -6.7624 -2.3432 16 6 -0.3642 -7.8508 -1.7654 17 1 -1.4360 -7.9714 -1.8209 18 6 0.4078 -8.7985 -1.1077 19 7 1.7140 -8.6513 -1.0396 20 14 -0.4069 -10.2836 -0.3202 21 1 -1.1242 -11.0642 -1.3601 22 1 0.6289 -11.1386 0.3133 23 1 -1.3731 -9.8290 0.7118 24 6 -0.8190 -6.2047 -4.4577 25 6 0.2030 -6.7951 -5.1774 26 6 -0.0159 -7.2053 -6.4792 27 6 -1.2541 -7.0167 -7.0644 28 6 -2.2744 -6.4216 -6.3464 29 6 -2.0568 -6.0154 -5.0430 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6966 2.1378 -0.0004 34 1 4.1582 2.0755 -0.0010 35 1 4.1586 -2.0748 0.0080 36 1 0.5786 -2.4246 0.5900 37 1 2.1324 -3.2785 0.4337 38 1 0.2404 -4.6291 -0.9261 39 1 -0.4923 -3.6545 -3.4735 40 1 1.0651 -4.5029 -3.6243 41 1 1.1957 -6.6539 -2.2930 42 1 2.2534 -9.3137 -0.5803 43 1 1.1712 -6.9394 -4.7214 44 1 0.7811 -7.6706 -7.0401 45 1 -1.4243 -7.3349 -8.0823 46 1 -3.2419 -6.2746 -6.8034 47 1 -2.8541 -5.5504 -4.4821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664583562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:22 Heat of formation + Delta-G solvation = 27.446355 kcal Electronic energy + Delta-G solvation = -28402.791330 eV Core-core repulsion = 24550.213722 eV Total energy + Delta-G solvation = -3852.577608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57884 -39.32104 -38.70000 -35.96408 -34.41034 -33.60362 -32.55549 -31.98864 -30.43903 -29.60544 -28.91585 -27.88344 -26.74045 -23.87851 -23.07567 -22.63182 -21.99267 -21.69778 -20.16153 -19.83116 -17.49221 -16.93766 -16.80180 -16.51320 -16.28277 -15.89861 -15.29408 -14.98949 -14.72594 -14.54234 -14.32716 -14.16614 -13.59560 -13.45182 -13.37910 -13.00469 -12.92503 -12.91767 -12.80737 -12.75922 -12.69574 -12.39517 -12.11663 -11.78541 -11.43904 -11.14991 -10.98074 -10.87531 -10.74000 -10.49436 -10.21209 -9.85451 -9.77082 -9.47901 -9.44740 -9.12598 -8.95290 -8.71383 -8.43318 -8.21565 -7.17821 -5.90801 -3.22422 1.07155 1.22875 1.83707 1.90164 2.86709 3.35190 3.41325 3.41855 3.44772 3.85337 4.28171 4.37724 4.46992 4.59004 4.62014 4.81304 4.89789 5.10199 5.21022 5.24914 5.31807 5.34147 5.39252 5.40842 5.41609 5.44268 5.52555 5.56511 5.58162 5.71947 5.76685 5.83879 5.87486 6.00848 6.01184 6.06651 6.23379 6.28658 6.38594 6.46117 6.60037 6.67944 6.76376 6.90991 6.99585 7.25309 7.50267 7.59225 7.85130 7.96007 8.25317 8.50015 9.38437 9.87950 10.24671 11.30388 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003040 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.104471 B = 9207.460093 C =11049.888052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.176 4.176 4 C 0.094 3.906 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.111 4.111 8 C -0.102 4.102 9 C 0.513 3.487 10 O -0.545 6.545 11 N -0.713 5.713 12 C 0.122 3.878 13 C 0.198 3.802 14 H 0.065 0.935 15 N -0.713 5.713 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.004 4.004 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.082 4.082 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.130 4.130 29 C -0.121 4.121 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 14.843 -0.173 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.035 4.035 3 C -0.196 4.196 4 C -0.062 4.062 5 N -0.198 5.198 6 C -0.042 4.042 7 C -0.114 4.114 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.423 6.423 11 N -0.365 5.365 12 C -0.003 4.003 13 C 0.087 3.913 14 H 0.083 0.917 15 N -0.354 5.354 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.085 4.085 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.140 4.140 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.889 15.211 -0.730 15.500 hybrid contribution -1.154 -1.409 0.595 1.916 sum -4.043 13.802 -0.135 14.382 Atomic orbital electron populations 1.20847 0.90477 1.03653 1.02509 1.20128 0.96623 0.92467 0.94310 1.21960 0.95629 0.98380 1.03624 1.22685 0.91758 0.96225 0.95543 1.67682 1.41108 0.98441 1.12554 1.22652 0.90968 0.96338 0.94274 1.20201 0.94955 0.94320 1.01886 1.20620 1.02391 0.95511 0.95766 1.20348 0.77898 0.81264 0.90678 1.90706 1.53605 1.51805 1.46191 1.45964 1.58312 1.21952 1.10244 1.21565 0.99944 0.96041 0.82731 1.19476 0.95406 0.87733 0.88650 0.91712 1.42448 1.06290 1.23505 1.63200 1.19136 0.92014 0.99148 1.27343 0.91165 1.24711 0.95395 0.98852 1.01119 1.69639 1.03524 1.36765 1.47583 0.86309 0.78083 0.82864 0.79128 1.21264 1.21688 1.21178 1.20975 0.93151 0.97285 0.97121 1.21005 0.99700 0.96336 0.93142 1.21114 0.97029 1.00651 0.95766 1.20985 0.93830 1.00970 0.99465 1.20986 0.98549 1.00302 0.94980 1.21006 0.96953 1.00923 0.95071 0.90493 0.91006 0.90936 0.85051 0.83043 0.82817 0.87788 0.87250 0.75214 0.91647 0.91644 0.77840 0.93294 0.85932 0.86844 0.87077 0.86994 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.31 36.00 0.34 -0.76 16 2 C -0.03 -0.32 5.92 -104.32 -0.62 -0.93 16 3 C -0.18 -1.86 9.82 -39.44 -0.39 -2.25 16 4 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 5 N -0.49 -6.76 10.36 -13.25 -0.14 -6.90 16 6 C 0.11 1.54 10.84 -17.55 -0.19 1.35 16 7 C -0.11 -1.41 4.39 -104.49 -0.46 -1.87 16 8 C -0.10 -1.18 5.18 -29.03 -0.15 -1.33 16 9 C 0.51 7.66 7.15 -10.98 -0.08 7.59 16 10 O -0.55 -10.08 16.03 5.55 0.09 -9.99 16 11 N -0.71 -10.67 5.39 -60.29 -0.32 -11.00 16 12 C 0.12 1.96 5.21 -4.04 -0.02 1.94 16 13 C 0.20 3.50 2.64 -69.09 -0.18 3.32 16 14 H 0.07 1.13 7.94 -51.93 -0.41 0.72 16 15 N -0.71 -15.46 3.81 -54.55 -0.21 -15.67 16 16 C -0.25 -6.11 9.92 -15.06 -0.15 -6.26 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 19 N -0.93 -25.74 13.06 55.49 0.72 -25.02 16 20 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.08 -1.44 4.92 -104.63 -0.51 -1.95 16 25 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 26 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 27 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 28 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 29 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.07 0.75 6.36 -51.93 -0.33 0.42 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.10 0.96 7.10 -51.93 -0.37 0.59 16 37 H 0.11 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.41 6.08 8.14 -40.82 -0.33 5.75 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.39 9.10 7.80 -40.82 -0.32 8.78 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.12 2.38 7.73 -52.49 -0.41 1.98 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.56 8.04 -52.49 -0.42 1.14 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -31.27 398.81 -10.30 -41.57 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -6.78 Total: 16.64 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -4.65 Total: -11.73 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.05 Total: -58.59 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.27 -10.30 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664583562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.013 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds