Wall clock time and date at job start Tue Mar 31 2020 22:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38673 * 120.79048 * 2 1 4 4 C 1.38178 * 119.17087 * 180.02562 * 3 2 1 5 5 N 1.31892 * 120.76043 * 0.02562 * 4 3 2 6 6 C 1.31862 * 121.72200 * 359.67886 * 5 4 3 7 7 C 1.38220 * 120.76343 * 0.58667 * 6 5 4 8 8 C 1.50700 * 120.41557 * 179.73109 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.71767 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.46716 * 64.99947 * 13 12 11 15 15 N 1.46496 * 109.47141 * 305.00435 * 13 12 11 16 16 C 1.36944 * 120.00042 * 154.99672 * 15 13 12 17 17 H 1.07996 * 119.99561 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99744 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00400 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47383 * 59.99638 * 20 18 16 22 22 H 1.48504 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47110 * 299.99632 * 20 18 16 24 24 C 1.50699 * 109.47491 * 184.99902 * 13 12 11 25 25 C 1.38234 * 119.99433 * 79.72824 * 24 13 12 26 26 C 1.38237 * 119.99973 * 179.78727 * 25 24 13 27 27 C 1.38244 * 119.99632 * 0.44690 * 26 25 24 28 28 C 1.38228 * 120.00097 * 359.80587 * 27 26 25 29 29 C 1.38228 * 120.00215 * 260.00286 * 24 13 12 30 30 H 1.09000 * 109.47717 * 269.97872 * 1 2 3 31 31 H 1.09005 * 109.47459 * 29.98054 * 1 2 3 32 32 H 1.09001 * 109.47001 * 149.97610 * 1 2 3 33 33 H 1.08006 * 120.41934 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.62715 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.61199 * 180.29594 * 6 5 4 36 36 H 1.09004 * 109.47210 * 144.72060 * 8 7 6 37 37 H 1.08994 * 109.47551 * 24.71712 * 8 7 6 38 38 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 39 39 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 40 40 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 41 41 H 0.96998 * 120.00378 * 334.99902 * 15 13 12 42 42 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 43 43 H 1.07996 * 120.00442 * 0.02562 * 25 24 13 44 44 H 1.07995 * 120.00942 * 180.27250 * 26 25 24 45 45 H 1.08002 * 119.99728 * 179.83819 * 27 26 25 46 46 H 1.08002 * 120.00338 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00605 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1522 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5983 -1.1515 0.0042 7 6 2.2166 -1.1908 -0.0006 8 6 1.4909 -2.5116 -0.0001 9 6 1.1394 -2.8921 -1.4153 10 8 1.4482 -2.1629 -2.3339 11 7 0.4872 -4.0457 -1.6607 12 6 0.1508 -4.4186 -3.0369 13 6 -0.5816 -5.7619 -3.0369 14 1 -1.5381 -5.6541 -2.5253 15 7 0.2331 -6.7624 -2.3432 16 6 -0.3642 -7.8508 -1.7654 17 1 -1.4360 -7.9714 -1.8209 18 6 0.4078 -8.7985 -1.1077 19 7 1.7140 -8.6513 -1.0396 20 14 -0.4069 -10.2836 -0.3202 21 1 -1.1242 -11.0642 -1.3601 22 1 0.6289 -11.1386 0.3133 23 1 -1.3731 -9.8290 0.7118 24 6 -0.8190 -6.2047 -4.4577 25 6 0.2030 -6.7951 -5.1774 26 6 -0.0159 -7.2053 -6.4792 27 6 -1.2541 -7.0167 -7.0644 28 6 -2.2744 -6.4216 -6.3464 29 6 -2.0568 -6.0154 -5.0430 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6966 2.1378 -0.0004 34 1 4.1582 2.0755 -0.0010 35 1 4.1586 -2.0748 0.0080 36 1 0.5786 -2.4246 0.5900 37 1 2.1324 -3.2785 0.4337 38 1 0.2404 -4.6291 -0.9261 39 1 -0.4923 -3.6545 -3.4735 40 1 1.0651 -4.5029 -3.6243 41 1 1.1957 -6.6539 -2.2930 42 1 2.2534 -9.3137 -0.5803 43 1 1.1712 -6.9394 -4.7214 44 1 0.7811 -7.6706 -7.0401 45 1 -1.4243 -7.3349 -8.0823 46 1 -3.2419 -6.2746 -6.8034 47 1 -2.8541 -5.5504 -4.4821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664583562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:21 Heat of formation + Delta-G solvation = 9.337076 kcal Electronic energy + Delta-G solvation = -28403.576607 eV Core-core repulsion = 24550.213722 eV Total energy + Delta-G solvation = -3853.362885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55142 -40.54539 -39.93144 -37.40060 -35.35070 -35.15664 -33.73284 -33.30553 -31.70103 -31.17773 -29.97620 -28.86595 -27.90173 -25.61421 -24.34035 -23.65416 -23.22188 -22.67019 -21.47995 -21.07055 -19.29817 -18.13453 -17.75583 -17.64826 -17.37966 -17.05010 -16.78044 -16.20886 -15.98068 -15.73065 -15.64005 -15.40957 -15.06811 -14.75398 -14.45146 -14.20187 -14.14822 -14.04702 -13.91375 -13.72068 -13.59537 -13.50744 -13.36837 -12.96063 -12.81512 -12.71777 -12.44106 -12.26211 -12.17606 -12.00985 -11.83176 -11.62273 -11.08146 -10.92612 -10.40022 -10.30750 -10.02619 -9.89721 -9.67952 -9.51978 -9.01950 -7.90548 -5.19897 0.17019 0.34355 0.58957 0.64630 1.50238 1.52153 1.57145 1.66680 2.29037 2.57860 2.89854 3.02664 3.43849 3.50779 3.70592 3.80192 3.83698 3.93404 4.03380 4.04958 4.07852 4.16791 4.23423 4.36278 4.38249 4.41848 4.48934 4.51607 4.61745 4.71636 4.72903 4.76180 4.79789 4.84651 4.91270 5.04752 5.06843 5.20700 5.23216 5.30671 5.42889 5.48894 5.57017 5.69414 5.73341 5.82735 5.94051 6.25844 6.29618 6.62101 7.05120 7.28119 7.37779 8.05365 8.32033 9.31137 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003040 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.104471 B = 9207.460093 C =11049.888052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.174 4.174 4 C 0.084 3.916 5 N -0.519 5.519 6 C 0.091 3.909 7 C -0.126 4.126 8 C -0.094 4.094 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.709 5.709 12 C 0.134 3.866 13 C 0.205 3.795 14 H 0.073 0.927 15 N -0.718 5.718 16 C -0.231 4.231 17 H 0.074 0.926 18 C -0.061 4.061 19 N -0.962 5.962 20 Si 0.961 3.039 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.274 1.274 24 C -0.101 4.101 25 C -0.111 4.111 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 16.025 -0.551 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.072 4.072 5 N -0.228 5.228 6 C -0.065 4.065 7 C -0.128 4.128 8 C -0.134 4.134 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.361 5.361 12 C 0.009 3.991 13 C 0.095 3.905 14 H 0.091 0.909 15 N -0.357 5.357 16 C -0.363 4.363 17 H 0.092 0.908 18 C -0.254 4.254 19 N -0.612 5.612 20 Si 0.791 3.209 21 H -0.215 1.215 22 H -0.228 1.228 23 H -0.200 1.200 24 C -0.105 4.105 25 C -0.130 4.130 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.145 4.145 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.181 0.819 34 H 0.196 0.804 35 H 0.171 0.829 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.732 16.406 -1.115 17.414 hybrid contribution -0.337 -1.670 0.585 1.802 sum -6.069 14.735 -0.531 15.945 Atomic orbital electron populations 1.20890 0.88758 1.03648 1.03917 1.20535 0.98025 0.92431 0.93606 1.22331 0.95405 0.99443 1.02186 1.23230 0.92749 0.96444 0.94801 1.67665 1.42136 0.99258 1.13729 1.22790 0.91722 0.96581 0.95381 1.20322 0.94773 0.95190 1.02562 1.20621 1.03705 0.95478 0.93594 1.20892 0.76737 0.80453 0.91726 1.90683 1.55007 1.52885 1.47704 1.45945 1.58303 1.22091 1.09763 1.21361 0.98900 0.95568 0.83272 1.19544 0.95035 0.87169 0.88701 0.90870 1.42474 1.05935 1.23708 1.63595 1.19417 0.92115 0.99275 1.25472 0.90802 1.25325 0.95828 1.01399 1.02830 1.69784 1.04667 1.37439 1.49327 0.85415 0.77017 0.80117 0.78359 1.21520 1.22801 1.20005 1.20905 0.94181 0.98469 0.96909 1.20952 0.98987 0.98467 0.94577 1.21346 0.98532 1.00665 0.95079 1.21387 0.92900 0.99838 1.00863 1.21423 0.99943 0.98712 0.94348 1.21293 0.96417 1.00759 0.96023 0.88258 0.89763 0.92154 0.81868 0.80375 0.82902 0.85052 0.86352 0.74943 0.90552 0.93848 0.79240 0.94226 0.88726 0.85583 0.83896 0.83522 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.31 71.23 0.66 -1.21 16 2 C -0.04 -0.82 5.92 -19.67 -0.12 -0.94 16 3 C -0.17 -3.35 9.82 22.36 0.22 -3.13 16 4 C 0.08 1.83 11.18 84.67 0.95 2.78 16 5 N -0.52 -14.50 10.36 -195.84 -2.03 -16.53 16 6 C 0.09 2.53 10.84 84.68 0.92 3.44 16 7 C -0.13 -3.16 4.39 -19.78 -0.09 -3.24 16 8 C -0.09 -2.13 5.18 29.10 0.15 -1.98 16 9 C 0.51 15.48 7.15 87.66 0.63 16.10 16 10 O -0.58 -21.92 16.03 -3.04 -0.05 -21.96 16 11 N -0.71 -21.40 5.39 -463.06 -2.49 -23.90 16 12 C 0.13 4.39 5.21 86.38 0.45 4.84 16 13 C 0.20 7.24 2.64 44.24 0.12 7.36 16 14 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 15 N -0.72 -31.73 3.81 -326.51 -1.24 -32.97 16 16 C -0.23 -11.53 9.92 84.03 0.83 -10.70 16 17 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 18 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 19 N -0.96 -54.88 13.06 21.65 0.28 -54.60 16 20 Si 0.96 43.70 29.55 68.60 2.03 45.72 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C -0.10 -3.53 4.92 -19.87 -0.10 -3.63 16 25 C -0.11 -4.14 9.32 22.27 0.21 -3.93 16 26 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 27 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 28 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 29 C -0.13 -3.68 9.67 22.27 0.22 -3.46 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.15 8.10 -2.38 -0.02 1.13 16 32 H 0.06 1.14 6.36 -2.39 -0.02 1.12 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 36 H 0.13 2.21 7.10 -2.38 -0.02 2.20 16 37 H 0.12 2.46 8.06 -2.39 -0.02 2.44 16 38 H 0.41 12.22 8.14 -92.71 -0.75 11.46 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.37 18.38 7.80 -92.71 -0.72 17.66 16 42 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 43 H 0.09 3.95 7.73 -2.91 -0.02 3.93 16 44 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 45 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 46 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 47 H 0.14 3.29 8.04 -2.91 -0.02 3.26 16 Total: -1.00 -69.06 398.81 2.19 -66.86 By element: Atomic # 1 Polarization: 48.74 SS G_CDS: -0.48 Total: 48.25 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 6.19 Total: -10.88 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -5.49 Total: -128.00 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.96 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.06 2.19 -66.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664583562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.201 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds