Wall clock time and date at job start Tue Mar 31 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38354 * 119.46176 * 2 1 4 4 C 1.38349 * 119.30424 * 180.02562 * 3 2 1 5 5 C 1.40030 * 118.29127 * 0.27265 * 4 3 2 6 6 C 1.47840 * 120.56061 * 179.70332 * 5 4 3 7 7 O 1.21549 * 119.99813 * 329.80955 * 6 5 4 8 8 N 1.34778 * 119.99857 * 149.80692 * 6 5 4 9 9 C 1.46499 * 119.99736 * 6.34455 * 8 6 5 10 10 C 1.52996 * 109.46889 * 98.91614 * 9 8 6 11 11 N 1.46504 * 109.47021 * 179.97438 * 10 9 8 12 12 C 1.36939 * 120.00072 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99933 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31618 * 119.99815 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47193 * 119.99661 * 16 14 12 19 19 H 1.48502 * 109.47325 * 240.00170 * 16 14 12 20 20 C 1.46502 * 119.99791 * 186.34653 * 8 6 5 21 21 C 1.50703 * 109.46923 * 93.09623 * 20 8 6 22 22 C 1.38231 * 120.00256 * 269.44953 * 21 20 8 23 23 C 1.38236 * 119.99907 * 179.76960 * 22 21 20 24 24 C 1.38224 * 120.00021 * 0.50976 * 23 22 21 25 25 C 1.38238 * 120.00344 * 359.74309 * 24 23 22 26 26 C 1.38232 * 119.99570 * 89.72859 * 21 20 8 27 27 C 1.39520 * 118.87496 * 359.43475 * 5 4 3 28 28 N 1.31688 * 120.57264 * 0.58121 * 27 5 4 29 29 H 1.08988 * 109.47054 * 90.00502 * 1 2 3 30 30 H 1.09005 * 109.46611 * 210.00329 * 1 2 3 31 31 H 1.09001 * 109.47036 * 329.99578 * 1 2 3 32 32 H 1.08001 * 120.34215 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.85720 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47112 * 218.91136 * 9 8 6 35 35 H 1.08998 * 109.47382 * 338.91046 * 9 8 6 36 36 H 1.08997 * 109.47216 * 299.99407 * 10 9 8 37 37 H 1.08998 * 109.47572 * 59.99549 * 10 9 8 38 38 H 0.96995 * 120.00244 * 0.02562 * 11 10 9 39 39 H 0.97008 * 119.99949 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46676 * 213.09837 * 20 8 6 41 41 H 1.09000 * 109.46967 * 333.09918 * 20 8 6 42 42 H 1.08006 * 119.99872 * 0.02562 * 22 21 20 43 43 H 1.08006 * 119.99719 * 180.23065 * 23 22 21 44 44 H 1.07998 * 120.00151 * 179.72650 * 24 23 22 45 45 H 1.08004 * 120.00294 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00533 * 359.97438 * 26 21 20 47 47 H 1.08005 * 119.71366 * 180.29447 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2313 -0.0340 -0.0069 6 6 5.7083 -0.0966 -0.0144 7 8 6.3514 0.7881 -0.5447 8 7 6.3418 -1.1346 0.5669 9 6 5.5698 -2.2678 1.0827 10 6 5.5932 -3.4075 0.0622 11 7 4.8218 -4.5410 0.5783 12 6 4.7008 -5.6831 -0.1674 13 1 5.1737 -5.7482 -1.1362 14 6 3.9694 -6.7569 0.3213 15 7 3.3918 -6.6771 1.5013 16 14 3.8038 -8.3147 -0.6962 17 1 4.5405 -8.1512 -1.9752 18 1 4.3710 -9.4612 0.0580 19 1 2.3687 -8.5702 -0.9802 20 6 7.8022 -1.1295 0.6828 21 6 8.1981 -0.5528 2.0177 22 6 8.4253 0.8049 2.1441 23 6 8.7837 1.3345 3.3697 24 6 8.9253 0.5050 4.4663 25 6 8.7031 -0.8535 4.3387 26 6 8.3396 -1.3823 3.1143 27 6 3.4716 -1.2043 -0.0004 28 7 2.1559 -1.1487 0.0000 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6443 2.1381 0.0004 33 1 4.1275 2.1264 -0.0010 34 1 6.0091 -2.6102 2.0197 35 1 4.5398 -1.9568 1.2566 36 1 5.1540 -3.0652 -0.8748 37 1 6.6233 -3.7185 -0.1117 38 1 4.3961 -4.4822 1.4479 39 1 2.8810 -7.4277 1.8431 40 1 8.1765 -2.1500 0.6024 41 1 8.2279 -0.5222 -0.1160 42 1 8.3187 1.4524 1.2863 43 1 8.9576 2.3958 3.4693 44 1 9.2096 0.9181 5.4227 45 1 8.8141 -1.5016 5.1955 46 1 8.1660 -2.4436 3.0147 47 1 3.9669 -2.1640 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672384962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:18 Heat of formation + Delta-G solvation = 69.527556 kcal Electronic energy + Delta-G solvation = -29097.809979 eV Core-core repulsion = 25247.057149 eV Total energy + Delta-G solvation = -3850.752830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00225 -39.59877 -38.67499 -36.56192 -34.43026 -33.36056 -32.44188 -31.84490 -31.04447 -30.92921 -28.45438 -27.93828 -26.01412 -24.06704 -23.55277 -22.67611 -22.57384 -21.72024 -21.36948 -19.61697 -17.76190 -17.36314 -16.93360 -16.55979 -16.18701 -15.70205 -15.55826 -15.15790 -15.00704 -14.59238 -14.46198 -14.25150 -13.84702 -13.48840 -13.36846 -13.31628 -13.15828 -12.99811 -12.95521 -12.56999 -12.41337 -12.24848 -11.92109 -11.75522 -11.64230 -11.30907 -11.04880 -11.00860 -10.92067 -10.82176 -10.13777 -10.07516 -9.88478 -9.80854 -9.30721 -8.99476 -8.96536 -8.88585 -8.83918 -8.63725 -7.03267 -5.81438 -3.12485 0.70566 1.20721 1.23995 1.35912 2.78604 2.97037 3.42003 3.48241 3.49965 3.78179 3.81017 4.23016 4.48331 4.60843 4.66090 4.74099 4.80412 4.85204 4.94615 4.95472 5.07936 5.12549 5.23140 5.30869 5.43400 5.45955 5.47826 5.53020 5.54548 5.59787 5.67348 5.71496 5.75878 5.89678 5.93127 5.95948 6.01614 6.03285 6.09699 6.29937 6.40260 6.44846 6.53674 6.55868 6.60541 6.65991 6.94311 7.34708 7.66771 7.99276 8.12452 8.35110 9.47608 9.98587 10.33907 11.40794 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007228 B = 0.004198 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3873.027968 B = 6668.799640 C = 9518.029314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.145 3.855 3 C -0.188 4.188 4 C -0.019 4.019 5 C -0.201 4.201 6 C 0.571 3.429 7 O -0.540 6.540 8 N -0.592 5.592 9 C 0.065 3.935 10 C 0.131 3.869 11 N -0.728 5.728 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.007 4.007 15 N -0.928 5.928 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.152 3.848 21 C -0.104 4.104 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.102 4.102 27 C 0.119 3.881 28 N -0.476 5.476 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 18.299 3.113 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.008 3.992 3 C -0.208 4.208 4 C -0.045 4.045 5 C -0.206 4.206 6 C 0.360 3.640 7 O -0.419 6.419 8 N -0.323 5.323 9 C -0.057 4.057 10 C 0.002 3.998 11 N -0.374 5.374 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.576 5.576 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C 0.030 3.970 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.038 4.038 28 N -0.185 5.185 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.174 17.859 2.684 18.536 hybrid contribution 0.229 -0.148 -0.083 0.285 sum 4.403 17.711 2.601 18.435 Atomic orbital electron populations 1.20789 0.88657 1.03752 1.03333 1.21677 0.97469 0.88527 0.91538 1.21888 0.94409 0.99442 1.05071 1.21570 0.94093 0.97302 0.91516 1.20939 0.94416 0.95821 1.09411 1.18087 0.86824 0.81414 0.77675 1.90723 1.67485 1.38717 1.44948 1.47720 1.06661 1.19395 1.58514 1.22713 0.97927 0.86398 0.98684 1.21060 0.96480 0.87664 0.94557 1.42219 1.61263 1.12058 1.21824 1.19197 1.27141 0.91331 0.99773 0.91021 1.24729 1.00183 0.98455 0.97006 1.69665 1.38254 1.31625 1.18092 0.86127 0.77441 0.83392 0.79254 1.20514 1.21833 1.21740 1.20419 0.79745 1.02450 0.94411 1.20244 1.00153 0.94059 0.96037 1.21182 0.98071 0.94744 0.97807 1.21135 1.00629 0.99651 0.93043 1.21157 1.00188 0.93896 0.98546 1.21162 1.00053 0.95349 0.97564 1.21190 0.98460 1.00045 0.92401 1.24684 0.89556 0.99712 0.89861 1.67807 1.09650 1.28460 1.12560 0.90077 0.89887 0.90674 0.84381 0.84144 0.89725 0.87868 0.95646 0.95026 0.78023 0.93444 0.88941 0.88522 0.85711 0.86296 0.86341 0.86016 0.85623 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.16 36.01 0.37 -0.72 16 2 C 0.15 1.96 6.78 -82.50 -0.56 1.40 16 3 C -0.19 -2.19 9.72 -39.50 -0.38 -2.57 16 4 C -0.02 -0.24 9.74 -38.87 -0.38 -0.62 16 5 C -0.20 -3.08 5.59 -104.82 -0.59 -3.67 16 6 C 0.57 9.02 7.47 -12.33 -0.09 8.93 16 7 O -0.54 -9.32 16.29 5.32 0.09 -9.24 16 8 N -0.59 -8.60 2.46 -176.18 -0.43 -9.03 16 9 C 0.07 1.02 4.99 -4.04 -0.02 1.00 16 10 C 0.13 2.45 5.49 -4.04 -0.02 2.43 16 11 N -0.73 -17.29 5.60 -59.91 -0.34 -17.63 16 12 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 13 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 15 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 16 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 C 0.15 1.95 5.62 -5.19 -0.03 1.92 16 21 C -0.10 -1.29 5.46 -104.63 -0.57 -1.87 16 22 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 23 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 24 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 25 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.10 -1.22 9.49 -39.58 -0.38 -1.60 16 27 C 0.12 1.99 8.68 -17.14 -0.15 1.84 16 28 N -0.48 -8.06 10.25 -9.16 -0.09 -8.16 16 29 H 0.08 0.72 8.14 -51.94 -0.42 0.30 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.61 7.99 -52.49 -0.42 1.19 16 34 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 35 H 0.10 1.68 4.00 -51.98 -0.21 1.47 16 36 H 0.03 0.51 7.08 -51.93 -0.37 0.14 16 37 H 0.03 0.59 7.84 -51.93 -0.41 0.19 16 38 H 0.39 9.61 7.67 -40.82 -0.31 9.30 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.09 1.09 7.74 -51.93 -0.40 0.69 16 41 H 0.10 1.25 7.20 -51.93 -0.37 0.88 16 42 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 46 H 0.13 1.43 7.99 -52.49 -0.42 1.01 16 47 H 0.20 3.61 2.64 -52.48 -0.14 3.47 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -32.17 391.87 -10.18 -42.35 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.38 Total: 12.55 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -4.63 Total: -7.24 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.14 Total: -61.30 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.17 -10.18 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672384962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.874 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds