Wall clock time and date at job start Tue Mar 31 2020 22:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38354 * 119.46176 * 2 1 4 4 C 1.38349 * 119.30424 * 180.02562 * 3 2 1 5 5 C 1.40030 * 118.29127 * 0.27265 * 4 3 2 6 6 C 1.47840 * 120.56061 * 179.70332 * 5 4 3 7 7 O 1.21549 * 119.99813 * 329.80955 * 6 5 4 8 8 N 1.34778 * 119.99857 * 149.80692 * 6 5 4 9 9 C 1.46499 * 119.99736 * 6.34455 * 8 6 5 10 10 C 1.52996 * 109.46889 * 98.91614 * 9 8 6 11 11 N 1.46504 * 109.47021 * 179.97438 * 10 9 8 12 12 C 1.36939 * 120.00072 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99933 * 359.97438 * 12 11 10 14 14 C 1.38810 * 120.00056 * 180.02562 * 12 11 10 15 15 N 1.31618 * 119.99815 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47193 * 119.99661 * 16 14 12 19 19 H 1.48502 * 109.47325 * 240.00170 * 16 14 12 20 20 C 1.46502 * 119.99791 * 186.34653 * 8 6 5 21 21 C 1.50703 * 109.46923 * 93.09623 * 20 8 6 22 22 C 1.38231 * 120.00256 * 269.44953 * 21 20 8 23 23 C 1.38236 * 119.99907 * 179.76960 * 22 21 20 24 24 C 1.38224 * 120.00021 * 0.50976 * 23 22 21 25 25 C 1.38238 * 120.00344 * 359.74309 * 24 23 22 26 26 C 1.38232 * 119.99570 * 89.72859 * 21 20 8 27 27 C 1.39520 * 118.87496 * 359.43475 * 5 4 3 28 28 N 1.31688 * 120.57264 * 0.58121 * 27 5 4 29 29 H 1.08988 * 109.47054 * 90.00502 * 1 2 3 30 30 H 1.09005 * 109.46611 * 210.00329 * 1 2 3 31 31 H 1.09001 * 109.47036 * 329.99578 * 1 2 3 32 32 H 1.08001 * 120.34215 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.85720 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.47112 * 218.91136 * 9 8 6 35 35 H 1.08998 * 109.47382 * 338.91046 * 9 8 6 36 36 H 1.08997 * 109.47216 * 299.99407 * 10 9 8 37 37 H 1.08998 * 109.47572 * 59.99549 * 10 9 8 38 38 H 0.96995 * 120.00244 * 0.02562 * 11 10 9 39 39 H 0.97008 * 119.99949 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.46676 * 213.09837 * 20 8 6 41 41 H 1.09000 * 109.46967 * 333.09918 * 20 8 6 42 42 H 1.08006 * 119.99872 * 0.02562 * 22 21 20 43 43 H 1.08006 * 119.99719 * 180.23065 * 23 22 21 44 44 H 1.07998 * 120.00151 * 179.72650 * 24 23 22 45 45 H 1.08004 * 120.00294 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00533 * 359.97438 * 26 21 20 47 47 H 1.08005 * 119.71366 * 180.29447 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.2313 -0.0340 -0.0069 6 6 5.7083 -0.0966 -0.0144 7 8 6.3514 0.7881 -0.5447 8 7 6.3418 -1.1346 0.5669 9 6 5.5698 -2.2678 1.0827 10 6 5.5932 -3.4075 0.0622 11 7 4.8218 -4.5410 0.5783 12 6 4.7008 -5.6831 -0.1674 13 1 5.1737 -5.7482 -1.1362 14 6 3.9694 -6.7569 0.3213 15 7 3.3918 -6.6771 1.5013 16 14 3.8038 -8.3147 -0.6962 17 1 4.5405 -8.1512 -1.9752 18 1 4.3710 -9.4612 0.0580 19 1 2.3687 -8.5702 -0.9802 20 6 7.8022 -1.1295 0.6828 21 6 8.1981 -0.5528 2.0177 22 6 8.4253 0.8049 2.1441 23 6 8.7837 1.3345 3.3697 24 6 8.9253 0.5050 4.4663 25 6 8.7031 -0.8535 4.3387 26 6 8.3396 -1.3823 3.1143 27 6 3.4716 -1.2043 -0.0004 28 7 2.1559 -1.1487 0.0000 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6443 2.1381 0.0004 33 1 4.1275 2.1264 -0.0010 34 1 6.0091 -2.6102 2.0197 35 1 4.5398 -1.9568 1.2566 36 1 5.1540 -3.0652 -0.8748 37 1 6.6233 -3.7185 -0.1117 38 1 4.3961 -4.4822 1.4479 39 1 2.8810 -7.4277 1.8431 40 1 8.1765 -2.1500 0.6024 41 1 8.2279 -0.5222 -0.1160 42 1 8.3187 1.4524 1.2863 43 1 8.9576 2.3958 3.4693 44 1 9.2096 0.9181 5.4227 45 1 8.8141 -1.5016 5.1955 46 1 8.1660 -2.4436 3.0147 47 1 3.9669 -2.1640 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672384962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:17 Heat of formation + Delta-G solvation = 51.430391 kcal Electronic energy + Delta-G solvation = -29098.594731 eV Core-core repulsion = 25247.057149 eV Total energy + Delta-G solvation = -3851.537582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16238 -40.61892 -39.69076 -37.96518 -36.07513 -34.47430 -33.62562 -33.21204 -32.42427 -31.79765 -29.68715 -29.27038 -27.04964 -25.81531 -24.75851 -23.77502 -23.54487 -23.16510 -22.35149 -20.79794 -19.34343 -18.77496 -18.04636 -17.76232 -17.31130 -16.87577 -16.78549 -16.35359 -16.08844 -15.91290 -15.64216 -15.40322 -15.27201 -15.03467 -14.71237 -14.37740 -14.28240 -14.11960 -14.04014 -13.50475 -13.35319 -13.18820 -13.09858 -13.04578 -12.94393 -12.87012 -12.74099 -12.37116 -12.14235 -12.05383 -11.87764 -11.83598 -11.30935 -11.01113 -10.95769 -10.43993 -9.99501 -9.89791 -9.83176 -9.71254 -9.04129 -7.94399 -5.24658 -0.39863 0.17058 0.32108 0.48682 1.49030 1.49907 1.58631 1.59495 1.81374 2.56659 2.67679 2.91773 3.13124 3.38593 3.41953 3.68622 3.73922 3.78371 3.84951 3.91651 3.97819 4.05057 4.13703 4.17355 4.26629 4.29237 4.32739 4.43933 4.56491 4.63184 4.68586 4.69780 4.73772 4.78773 4.85096 4.93121 5.04168 5.05853 5.07728 5.14921 5.15988 5.31971 5.51180 5.55416 5.60262 5.61044 5.65763 6.09287 6.12056 6.26321 6.85703 6.93796 7.34292 8.02070 8.27878 9.28483 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007228 B = 0.004198 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3873.027968 B = 6668.799640 C = 9518.029314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.134 3.866 3 C -0.170 4.170 4 C -0.021 4.021 5 C -0.213 4.213 6 C 0.570 3.430 7 O -0.558 6.558 8 N -0.587 5.587 9 C 0.084 3.916 10 C 0.138 3.862 11 N -0.736 5.736 12 C -0.246 4.246 13 H 0.074 0.926 14 C -0.064 4.064 15 N -0.962 5.962 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.294 1.294 20 C 0.151 3.849 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.129 4.129 26 C -0.115 4.115 27 C 0.102 3.898 28 N -0.515 5.515 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.183 0.817 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.378 0.622 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.125 0.875 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 20.206 3.485 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.004 4.004 3 C -0.189 4.189 4 C -0.047 4.047 5 C -0.218 4.218 6 C 0.359 3.641 7 O -0.438 6.438 8 N -0.317 5.317 9 C -0.039 4.039 10 C 0.011 3.989 11 N -0.380 5.380 12 C -0.377 4.377 13 H 0.092 0.908 14 C -0.258 4.258 15 N -0.612 5.612 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.218 1.218 19 H -0.222 1.222 20 C 0.030 3.970 21 C -0.116 4.116 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.134 4.134 27 C -0.055 4.055 28 N -0.225 5.225 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.200 0.800 33 H 0.176 0.824 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.143 0.857 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.137 19.783 3.036 20.438 hybrid contribution 0.246 -0.621 -0.208 0.699 sum 4.383 19.162 2.828 19.859 Atomic orbital electron populations 1.20910 0.86245 1.04761 1.04382 1.22322 0.99119 0.88282 0.90636 1.22317 0.93813 1.00469 1.02277 1.21889 0.95031 0.96972 0.90841 1.20958 0.93990 0.96450 1.10443 1.18237 0.87152 0.81318 0.77357 1.90703 1.67913 1.39378 1.45824 1.47702 1.07287 1.18648 1.58017 1.22383 0.98119 0.85645 0.97737 1.21079 0.95593 0.87265 0.94994 1.42304 1.61727 1.12657 1.21318 1.19542 1.26079 0.92215 0.99878 0.90799 1.25469 1.00674 1.01422 0.98191 1.69804 1.39489 1.32271 1.19667 0.85157 0.76985 0.79825 0.78264 1.19288 1.21834 1.22160 1.20511 0.78627 1.02915 0.94992 1.20190 1.01165 0.94446 0.95792 1.21238 0.98938 0.94565 0.98426 1.21424 0.99789 1.00947 0.92517 1.21503 0.99073 0.93580 0.99533 1.21453 0.99431 0.96154 0.97640 1.21293 0.99103 1.00099 0.92889 1.24346 0.89989 0.99461 0.91717 1.67751 1.09846 1.30843 1.14086 0.88852 0.91326 0.87218 0.79953 0.82387 0.89029 0.88279 0.96357 0.94474 0.78970 0.93914 0.88238 0.88854 0.86428 0.84162 0.83650 0.84245 0.85668 0.80249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 10.16 71.24 0.72 -1.17 16 2 C 0.13 3.41 6.78 42.57 0.29 3.70 16 3 C -0.17 -3.46 9.72 22.32 0.22 -3.25 16 4 C -0.02 -0.52 9.74 22.73 0.22 -0.30 16 5 C -0.21 -6.55 5.59 -19.99 -0.11 -6.67 16 6 C 0.57 18.18 7.47 86.78 0.65 18.83 16 7 O -0.56 -19.31 16.29 -3.87 -0.06 -19.38 16 8 N -0.59 -17.33 2.46 -829.58 -2.04 -19.37 16 9 C 0.08 2.69 4.99 86.38 0.43 3.13 16 10 C 0.14 5.32 5.49 86.38 0.47 5.80 16 11 N -0.74 -35.86 5.60 -343.45 -1.92 -37.79 16 12 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 13 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 14 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 15 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16 16 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 C 0.15 3.93 5.62 85.63 0.48 4.41 16 21 C -0.11 -2.85 5.46 -19.87 -0.11 -2.96 16 22 C -0.11 -2.69 9.70 22.27 0.22 -2.48 16 23 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 24 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 26 C -0.12 -2.69 9.49 22.27 0.21 -2.48 16 27 C 0.10 3.51 8.68 85.02 0.74 4.25 16 28 N -0.52 -17.72 10.25 -182.88 -1.88 -19.60 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 32 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.16 3.28 7.99 -2.91 -0.02 3.25 16 34 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 35 H 0.10 3.37 4.00 -2.43 -0.01 3.36 16 36 H 0.02 0.76 7.08 -2.39 -0.02 0.74 16 37 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 38 H 0.38 19.47 7.67 -92.71 -0.71 18.76 16 39 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 40 H 0.10 2.39 7.74 -2.39 -0.02 2.37 16 41 H 0.09 2.48 7.20 -2.39 -0.02 2.46 16 42 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.13 2.84 7.99 -2.91 -0.02 2.82 16 47 H 0.18 6.80 2.64 -2.91 -0.01 6.79 16 Total: -1.00 -70.36 391.87 3.10 -67.26 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: 0.29 Total: 40.02 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 6.41 Total: -1.56 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -5.56 Total: -134.04 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.38 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.36 3.10 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672384962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.695 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds