Wall clock time and date at job start Tue Mar 31 2020 22:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38603 * 119.54972 * 2 1 4 4 C 1.38587 * 119.34759 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.28013 * 4 3 2 6 6 C 1.39264 * 119.06364 * 359.45280 * 5 4 3 7 7 C 1.48165 * 119.72722 * 180.25557 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.29946 * 7 6 5 9 9 N 1.34780 * 120.00496 * 180.30043 * 7 6 5 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99730 * 269.72639 * 11 10 9 13 13 C 1.38233 * 120.00194 * 179.74352 * 12 11 10 14 14 C 1.38238 * 119.99794 * 0.55189 * 13 12 11 15 15 C 1.50697 * 120.00437 * 179.72633 * 14 13 12 16 16 H 1.08995 * 109.47324 * 199.98102 * 15 14 13 17 17 C 1.52996 * 109.47213 * 79.97387 * 15 14 13 18 18 N 1.46509 * 109.46825 * 319.97566 * 15 14 13 19 19 C 1.36930 * 119.99904 * 204.99939 * 18 15 14 20 20 H 1.08001 * 120.00191 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99877 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99951 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47539 * 59.99722 * 23 21 19 25 25 H 1.48498 * 109.47150 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47256 * 299.99876 * 23 21 19 27 27 C 1.38238 * 119.99836 * 359.70155 * 14 13 12 28 28 C 1.38233 * 120.00078 * 89.99648 * 11 10 9 29 29 N 1.31492 * 119.54650 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47153 * 89.99424 * 1 2 3 31 31 H 1.08997 * 109.47299 * 210.00080 * 1 2 3 32 32 H 1.09001 * 109.46975 * 329.99927 * 1 2 3 33 33 H 1.07992 * 120.32569 * 359.95881 * 3 2 1 34 34 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.46727 * 179.72671 * 5 4 3 36 36 H 0.97001 * 119.99585 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47263 * 299.99710 * 10 9 7 38 38 H 1.08997 * 109.47384 * 60.00321 * 10 9 7 39 39 H 1.08004 * 119.99859 * 0.02562 * 12 11 10 40 40 H 1.07994 * 120.00404 * 180.27560 * 13 12 11 41 41 H 1.09004 * 109.47482 * 300.00320 * 17 15 14 42 42 H 1.09005 * 109.47201 * 60.00680 * 17 15 14 43 43 H 1.08998 * 109.46999 * 180.02562 * 17 15 14 44 44 H 0.96999 * 119.99467 * 24.99954 * 18 15 14 45 45 H 0.96997 * 119.99678 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.00257 * 180.02562 * 27 14 13 47 47 H 1.07994 * 120.00089 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0199 -0.0049 6 6 3.4821 -1.1925 0.0010 7 6 4.1691 -2.5052 0.0010 8 8 5.3832 -2.5556 0.0015 9 7 3.4475 -3.6436 0.0005 10 6 4.1268 -4.9415 0.0000 11 6 3.1009 -6.0455 -0.0011 12 6 2.6341 -6.5563 1.1956 13 6 1.6892 -7.5653 1.1947 14 6 1.2195 -8.0712 -0.0030 15 6 0.1939 -9.1754 -0.0041 16 1 0.2045 -9.6801 -0.9700 17 6 -1.1941 -8.5825 0.2465 18 7 0.5118 -10.1382 1.0535 19 6 0.0836 -11.4347 0.9503 20 1 -0.4883 -11.7476 0.0892 21 6 0.3844 -12.3468 1.9526 22 7 1.0817 -11.9656 3.0017 23 14 -0.1993 -14.1157 1.8115 24 1 0.3712 -14.7289 0.5853 25 1 0.2495 -14.8814 3.0021 26 1 -1.6820 -14.1431 1.7348 27 6 1.6901 -7.5639 -1.1997 28 6 2.6309 -6.5510 -1.1987 29 7 2.1555 -1.1439 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6486 2.1398 -0.0007 34 1 4.1320 2.1271 0.0001 35 1 5.3126 -0.0610 -0.0091 36 1 2.4783 -3.6034 0.0005 37 1 4.7506 -5.0248 -0.8900 38 1 4.7505 -5.0256 0.8900 39 1 3.0044 -6.1640 2.1312 40 1 1.3212 -7.9613 2.1296 41 1 -1.2047 -8.0777 1.2126 42 1 -1.4307 -7.8662 -0.5403 43 1 -1.9358 -9.3812 0.2462 44 1 1.0257 -9.8571 1.8266 45 1 1.2915 -12.6028 3.7022 46 1 1.3229 -7.9588 -2.1353 47 1 2.9991 -6.1551 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672933419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:43 Heat of formation + Delta-G solvation = 29.175349 kcal Electronic energy + Delta-G solvation = -27392.178324 eV Core-core repulsion = 23539.675691 eV Total energy + Delta-G solvation = -3852.502633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99792 -39.62930 -38.92230 -35.99553 -34.60188 -33.42480 -33.01841 -32.23062 -30.69443 -30.25049 -28.40244 -28.14175 -26.38626 -24.59328 -23.80467 -22.66525 -22.47085 -21.59881 -20.89976 -19.71306 -18.41500 -17.42683 -16.98925 -16.52263 -15.84727 -15.76980 -15.63934 -15.15903 -14.99196 -14.54057 -14.52835 -14.25262 -13.87798 -13.54909 -13.38593 -13.36615 -13.11443 -12.99172 -12.82756 -12.67217 -12.40304 -12.37287 -12.28499 -11.91882 -11.51613 -11.22549 -10.90132 -10.82653 -10.64242 -10.57768 -10.38101 -10.30801 -10.00508 -9.90180 -9.67344 -9.46301 -9.18233 -8.97038 -8.61296 -8.30274 -6.99576 -5.78157 -3.06965 0.26057 0.76968 1.48662 1.71565 2.45566 2.97789 3.43514 3.47925 3.48251 3.48903 3.67732 4.09314 4.23027 4.43590 4.53851 4.58430 4.63155 4.73575 4.97139 5.00993 5.11854 5.15860 5.19052 5.24346 5.32819 5.41321 5.54846 5.56469 5.58886 5.67355 5.68636 5.73955 5.80184 5.98321 6.03593 6.14907 6.21757 6.27103 6.32821 6.37185 6.51387 6.63352 6.73744 6.79413 6.96151 7.17581 7.19305 7.30342 7.48452 7.68238 7.96422 8.40144 9.51368 10.07100 10.42391 11.44411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001930 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.865899 B =14505.631103 C =15178.112674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.152 4.152 4 C -0.078 4.078 5 C -0.120 4.120 6 C 0.086 3.914 7 C 0.568 3.432 8 O -0.536 6.536 9 N -0.702 5.702 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.106 4.106 14 C -0.053 4.053 15 C 0.204 3.796 16 H 0.056 0.944 17 C -0.159 4.159 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.122 4.122 28 C -0.101 4.101 29 N -0.459 5.459 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 28.627 -7.627 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.012 4.012 3 C -0.172 4.172 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.052 4.052 7 C 0.353 3.647 8 O -0.413 6.413 9 N -0.353 5.353 10 C 0.042 3.958 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.124 4.124 14 C -0.054 4.054 15 C 0.094 3.906 16 H 0.074 0.926 17 C -0.219 4.219 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.140 4.140 28 C -0.119 4.119 29 N -0.172 5.172 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.166 27.558 -7.653 28.683 hybrid contribution -0.095 -0.129 0.276 0.319 sum 2.072 27.429 -7.377 28.479 Atomic orbital electron populations 1.20766 0.88126 1.03964 1.03489 1.21356 0.97288 0.87860 0.94744 1.22214 0.95062 0.99503 1.00391 1.21638 0.94437 0.98344 0.96005 1.22124 1.02362 0.91788 0.97766 1.21144 0.89664 0.94159 1.00271 1.17895 0.86481 0.83303 0.77032 1.90792 1.12973 1.87075 1.50440 1.46008 1.11425 1.04880 1.72943 1.20231 0.93115 0.79407 1.03029 1.19611 1.00387 0.99203 0.93908 1.21014 0.96832 0.96688 0.97052 1.21079 0.96800 0.95840 0.98687 1.20528 0.96327 0.95717 0.92804 1.19250 0.90015 0.87439 0.93909 0.92633 1.22418 0.99251 1.00083 1.00185 1.42517 1.65314 1.06707 1.21812 1.19194 1.27875 0.86059 1.03988 0.91126 1.24747 1.00844 0.98273 0.97033 1.69648 1.43561 1.34461 1.10366 0.86255 0.78239 0.84787 0.76817 1.21267 1.21699 1.21258 1.21006 0.97880 0.97328 0.97799 1.20917 0.97198 0.96889 0.96932 1.67399 1.08546 1.30233 1.10975 0.90065 0.89972 0.90451 0.84215 0.83962 0.83382 0.75026 0.90574 0.90472 0.86327 0.85379 0.93321 0.94321 0.92410 0.77984 0.93413 0.86131 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.17 36.01 0.37 -0.20 16 2 C 0.13 1.01 6.78 -82.60 -0.56 0.45 16 3 C -0.15 -0.92 9.75 -39.32 -0.38 -1.30 16 4 C -0.08 -0.49 10.17 -39.31 -0.40 -0.89 16 5 C -0.12 -1.06 9.63 -39.06 -0.38 -1.44 16 6 C 0.09 0.94 6.75 -83.01 -0.56 0.38 16 7 C 0.57 7.19 7.81 -12.18 -0.10 7.09 16 8 O -0.54 -8.09 16.32 5.36 0.09 -8.00 16 9 N -0.70 -8.17 5.54 -62.33 -0.35 -8.51 16 10 C 0.16 1.97 5.80 -5.19 -0.03 1.94 16 11 C -0.13 -1.72 5.25 -104.62 -0.55 -2.27 16 12 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 13 C -0.11 -1.79 9.06 -39.58 -0.36 -2.15 16 14 C -0.05 -0.91 4.95 -104.62 -0.52 -1.43 16 15 C 0.20 4.04 3.09 -69.08 -0.21 3.83 16 16 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 17 C -0.16 -2.86 9.47 37.16 0.35 -2.50 16 18 N -0.72 -17.90 5.07 -54.55 -0.28 -18.17 16 19 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.12 -1.81 9.67 -39.58 -0.38 -2.19 16 28 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 29 N -0.46 -4.72 9.45 -6.06 -0.06 -4.78 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 36 H 0.41 4.58 7.79 -40.82 -0.32 4.27 16 37 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.13 2.33 6.92 -52.49 -0.36 1.97 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 10.07 6.07 -40.82 -0.25 9.82 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 47 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -32.77 401.21 -10.34 -43.11 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.77 Total: 11.69 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.72 Total: -11.41 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.05 Total: -58.73 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.77 -10.34 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.286 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds