Wall clock time and date at job start Tue Mar 31 2020 22:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38603 * 119.54972 * 2 1 4 4 C 1.38587 * 119.34759 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.28013 * 4 3 2 6 6 C 1.39264 * 119.06364 * 359.45280 * 5 4 3 7 7 C 1.48165 * 119.72722 * 180.25557 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.29946 * 7 6 5 9 9 N 1.34780 * 120.00496 * 180.30043 * 7 6 5 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99730 * 269.72639 * 11 10 9 13 13 C 1.38233 * 120.00194 * 179.74352 * 12 11 10 14 14 C 1.38238 * 119.99794 * 0.55189 * 13 12 11 15 15 C 1.50697 * 120.00437 * 179.72633 * 14 13 12 16 16 H 1.08995 * 109.47324 * 199.98102 * 15 14 13 17 17 C 1.52996 * 109.47213 * 79.97387 * 15 14 13 18 18 N 1.46509 * 109.46825 * 319.97566 * 15 14 13 19 19 C 1.36930 * 119.99904 * 204.99939 * 18 15 14 20 20 H 1.08001 * 120.00191 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99877 * 180.02562 * 19 18 15 22 22 N 1.31620 * 119.99951 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47539 * 59.99722 * 23 21 19 25 25 H 1.48498 * 109.47150 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47256 * 299.99876 * 23 21 19 27 27 C 1.38238 * 119.99836 * 359.70155 * 14 13 12 28 28 C 1.38233 * 120.00078 * 89.99648 * 11 10 9 29 29 N 1.31492 * 119.54650 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47153 * 89.99424 * 1 2 3 31 31 H 1.08997 * 109.47299 * 210.00080 * 1 2 3 32 32 H 1.09001 * 109.46975 * 329.99927 * 1 2 3 33 33 H 1.07992 * 120.32569 * 359.95881 * 3 2 1 34 34 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.46727 * 179.72671 * 5 4 3 36 36 H 0.97001 * 119.99585 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47263 * 299.99710 * 10 9 7 38 38 H 1.08997 * 109.47384 * 60.00321 * 10 9 7 39 39 H 1.08004 * 119.99859 * 0.02562 * 12 11 10 40 40 H 1.07994 * 120.00404 * 180.27560 * 13 12 11 41 41 H 1.09004 * 109.47482 * 300.00320 * 17 15 14 42 42 H 1.09005 * 109.47201 * 60.00680 * 17 15 14 43 43 H 1.08998 * 109.46999 * 180.02562 * 17 15 14 44 44 H 0.96999 * 119.99467 * 24.99954 * 18 15 14 45 45 H 0.96997 * 119.99678 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.00257 * 180.02562 * 27 14 13 47 47 H 1.07994 * 120.00089 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0199 -0.0049 6 6 3.4821 -1.1925 0.0010 7 6 4.1691 -2.5052 0.0010 8 8 5.3832 -2.5556 0.0015 9 7 3.4475 -3.6436 0.0005 10 6 4.1268 -4.9415 0.0000 11 6 3.1009 -6.0455 -0.0011 12 6 2.6341 -6.5563 1.1956 13 6 1.6892 -7.5653 1.1947 14 6 1.2195 -8.0712 -0.0030 15 6 0.1939 -9.1754 -0.0041 16 1 0.2045 -9.6801 -0.9700 17 6 -1.1941 -8.5825 0.2465 18 7 0.5118 -10.1382 1.0535 19 6 0.0836 -11.4347 0.9503 20 1 -0.4883 -11.7476 0.0892 21 6 0.3844 -12.3468 1.9526 22 7 1.0817 -11.9656 3.0017 23 14 -0.1993 -14.1157 1.8115 24 1 0.3712 -14.7289 0.5853 25 1 0.2495 -14.8814 3.0021 26 1 -1.6820 -14.1431 1.7348 27 6 1.6901 -7.5639 -1.1997 28 6 2.6309 -6.5510 -1.1987 29 7 2.1555 -1.1439 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6486 2.1398 -0.0007 34 1 4.1320 2.1271 0.0001 35 1 5.3126 -0.0610 -0.0091 36 1 2.4783 -3.6034 0.0005 37 1 4.7506 -5.0248 -0.8900 38 1 4.7505 -5.0256 0.8900 39 1 3.0044 -6.1640 2.1312 40 1 1.3212 -7.9613 2.1296 41 1 -1.2047 -8.0777 1.2126 42 1 -1.4307 -7.8662 -0.5403 43 1 -1.9358 -9.3812 0.2462 44 1 1.0257 -9.8571 1.8266 45 1 1.2915 -12.6028 3.7022 46 1 1.3229 -7.9588 -2.1353 47 1 2.9991 -6.1551 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672933419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:42 Heat of formation + Delta-G solvation = 9.213751 kcal Electronic energy + Delta-G solvation = -27393.043924 eV Core-core repulsion = 23539.675691 eV Total energy + Delta-G solvation = -3853.368233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71048 -40.70112 -39.93791 -37.45886 -35.86440 -34.20486 -33.97745 -33.48677 -31.93408 -31.62059 -30.04747 -28.72646 -27.43596 -25.95921 -25.18305 -23.81223 -23.21320 -22.82254 -21.77686 -21.10861 -19.41271 -19.21538 -17.74066 -17.32844 -17.00405 -16.79823 -16.57254 -16.45583 -16.10138 -15.89667 -15.46007 -15.27223 -14.99562 -14.93484 -14.60610 -14.44554 -14.27332 -14.01900 -13.84370 -13.65506 -13.44942 -13.18895 -13.09269 -12.97714 -12.88371 -12.76843 -12.71854 -12.47510 -12.20025 -12.02848 -11.60668 -11.57801 -11.49478 -10.99191 -10.93792 -10.57680 -10.28499 -9.93748 -9.80100 -9.56383 -9.02460 -7.93661 -5.22211 -0.38588 0.22433 0.29059 0.52193 1.47162 1.50186 1.56087 1.64518 2.07127 2.56371 2.80935 2.86658 3.07317 3.40420 3.62352 3.72285 3.85887 3.87571 3.97733 4.02171 4.03713 4.09249 4.14378 4.33399 4.44786 4.53278 4.58569 4.59945 4.64822 4.77236 4.77348 4.78142 4.83187 5.01027 5.05631 5.11009 5.11647 5.13019 5.21485 5.21949 5.26825 5.41593 5.50379 5.54971 5.61655 5.65272 5.82843 6.08404 6.28298 6.33451 6.78007 7.05151 7.34346 8.09245 8.33326 9.29732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001930 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.865899 B =14505.631103 C =15178.112674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.074 4.074 5 C -0.129 4.129 6 C 0.056 3.944 7 C 0.567 3.433 8 O -0.569 6.569 9 N -0.696 5.696 10 C 0.169 3.831 11 C -0.117 4.117 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.073 4.073 15 C 0.199 3.801 16 H 0.055 0.945 17 C -0.148 4.148 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.973 3.027 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.277 1.277 27 C -0.120 4.120 28 C -0.093 4.093 29 N -0.481 5.481 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.146 0.854 36 H 0.416 0.584 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.140 0.860 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 31.274 -9.451 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.029 4.029 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.150 4.150 6 C -0.081 4.081 7 C 0.353 3.647 8 O -0.448 6.448 9 N -0.347 5.347 10 C 0.047 3.953 11 C -0.118 4.118 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.074 4.074 15 C 0.091 3.909 16 H 0.073 0.927 17 C -0.208 4.208 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.802 3.198 24 H -0.205 1.205 25 H -0.224 1.224 26 H -0.203 1.203 27 C -0.139 4.139 28 C -0.111 4.111 29 N -0.194 5.194 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.195 0.805 34 H 0.194 0.806 35 H 0.163 0.837 36 H 0.253 0.747 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.123 0.877 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.157 0.843 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.510 30.225 -9.524 31.726 hybrid contribution 0.075 -0.744 0.778 1.079 sum 1.586 29.481 -8.746 30.792 Atomic orbital electron populations 1.20840 0.86500 1.04588 1.04187 1.21912 0.98515 0.88019 0.94496 1.22651 0.95100 1.00235 0.97863 1.22049 0.94881 0.98498 0.94479 1.22265 1.02389 0.92372 0.97953 1.20958 0.90322 0.93685 1.03098 1.18242 0.86203 0.84150 0.76146 1.90759 1.14267 1.87646 1.52136 1.45933 1.11494 1.04622 1.72637 1.20165 0.92676 0.79188 1.03302 1.19721 0.99725 0.98837 0.93490 1.21118 0.96221 0.96045 0.98333 1.20959 0.98211 0.97138 0.97814 1.20340 0.96945 0.96077 0.93993 1.19422 0.91752 0.87505 0.92218 0.92664 1.22251 0.97512 1.00089 1.00942 1.42726 1.65199 1.06885 1.22816 1.19607 1.26597 0.87223 1.03642 0.90431 1.25563 1.01971 1.02335 0.97130 1.69817 1.45633 1.35417 1.11253 0.85212 0.78029 0.80013 0.76515 1.20458 1.22389 1.20319 1.21193 0.97812 0.97411 0.97457 1.21212 0.96038 0.95816 0.98029 1.67335 1.08287 1.31858 1.11923 0.89240 0.91245 0.87951 0.80533 0.80564 0.83651 0.74667 0.89860 0.90767 0.85214 0.87739 0.94117 0.91105 0.93813 0.79268 0.94119 0.84257 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 71.24 0.72 -0.15 16 2 C 0.11 1.53 6.78 42.70 0.29 1.82 16 3 C -0.14 -1.21 9.75 22.44 0.22 -0.99 16 4 C -0.07 -0.72 10.17 22.45 0.23 -0.49 16 5 C -0.13 -2.16 9.63 22.61 0.22 -1.94 16 6 C 0.06 1.22 6.75 41.89 0.28 1.50 16 7 C 0.57 14.41 7.81 86.88 0.68 15.09 16 8 O -0.57 -17.42 16.32 -3.75 -0.06 -17.49 16 9 N -0.70 -15.91 5.54 -469.40 -2.60 -18.51 16 10 C 0.17 3.89 5.80 85.64 0.50 4.39 16 11 C -0.12 -2.94 5.25 -19.87 -0.10 -3.05 16 12 C -0.10 -2.86 9.70 22.27 0.22 -2.64 16 13 C -0.12 -4.28 9.06 22.27 0.20 -4.08 16 14 C -0.07 -2.51 4.95 -19.87 -0.10 -2.61 16 15 C 0.20 7.94 3.09 44.24 0.14 8.08 16 16 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 17 C -0.15 -5.28 9.47 71.98 0.68 -4.60 16 18 N -0.73 -37.45 5.07 -326.50 -1.66 -39.10 16 19 C -0.24 -13.32 9.93 84.04 0.83 -12.48 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.11 13.06 21.65 0.28 -59.82 16 23 Si 0.97 46.54 29.55 68.60 2.03 48.56 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 C -0.12 -3.38 9.67 22.27 0.22 -3.17 16 28 C -0.09 -2.24 9.70 22.27 0.22 -2.03 16 29 N -0.48 -9.53 9.45 -173.08 -1.64 -11.17 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.32 8.08 -2.39 -0.02 0.30 16 33 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 34 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.15 2.41 7.64 -2.91 -0.02 2.39 16 36 H 0.42 9.03 7.79 -92.71 -0.72 8.31 16 37 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 38 H 0.07 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.10 4.08 6.92 -2.91 -0.02 4.06 16 41 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.37 20.47 6.07 -92.71 -0.56 19.90 16 45 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 46 H 0.14 3.34 8.04 -2.91 -0.02 3.32 16 47 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -73.17 401.21 1.97 -71.20 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.29 Total: 37.72 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.90 Total: -11.40 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -5.61 Total: -128.61 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.06 Total: -17.49 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.17 1.97 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.418 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds