Wall clock time and date at job start Tue Mar 31 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38603 * 119.54972 * 2 1 4 4 C 1.38587 * 119.34759 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.28013 * 4 3 2 6 6 C 1.39264 * 119.06364 * 359.45280 * 5 4 3 7 7 C 1.48165 * 119.72722 * 180.25557 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.29946 * 7 6 5 9 9 N 1.34780 * 120.00496 * 180.30043 * 7 6 5 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99730 * 269.72639 * 11 10 9 13 13 C 1.38237 * 120.00174 * 179.80734 * 12 11 10 14 14 C 1.38235 * 119.99758 * 0.42424 * 13 12 11 15 15 C 1.50697 * 120.00311 * 179.79015 * 14 13 12 16 16 H 1.08991 * 109.47504 * 160.02090 * 15 14 13 17 17 C 1.53004 * 109.46754 * 280.02021 * 15 14 13 18 18 N 1.46498 * 109.47134 * 40.01686 * 15 14 13 19 19 C 1.36936 * 120.00122 * 155.00601 * 18 15 14 20 20 H 1.08002 * 119.99873 * 359.97438 * 19 18 15 21 21 C 1.38817 * 119.99937 * 180.02562 * 19 18 15 22 22 N 1.31611 * 120.00033 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47042 * 59.99943 * 23 21 19 25 25 H 1.48493 * 109.47101 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46988 * 300.00240 * 23 21 19 27 27 C 1.38238 * 119.99947 * 359.80478 * 14 13 12 28 28 C 1.38233 * 120.00078 * 89.99648 * 11 10 9 29 29 N 1.31492 * 119.54650 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47153 * 89.99424 * 1 2 3 31 31 H 1.08997 * 109.47299 * 210.00080 * 1 2 3 32 32 H 1.09001 * 109.46975 * 329.99927 * 1 2 3 33 33 H 1.07992 * 120.32569 * 359.95881 * 3 2 1 34 34 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.46727 * 179.72671 * 5 4 3 36 36 H 0.97001 * 119.99585 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47263 * 299.99710 * 10 9 7 38 38 H 1.08997 * 109.47384 * 60.00321 * 10 9 7 39 39 H 1.08004 * 119.99859 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.00025 * 180.20708 * 13 12 11 41 41 H 1.08998 * 109.46968 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.47185 * 299.99499 * 17 15 14 43 43 H 1.09004 * 109.47393 * 59.99749 * 17 15 14 44 44 H 0.97010 * 120.00159 * 335.00444 * 18 15 14 45 45 H 0.97005 * 119.99736 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.00410 * 179.97438 * 27 14 13 47 47 H 1.07995 * 119.99897 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0199 -0.0049 6 6 3.4821 -1.1925 0.0010 7 6 4.1691 -2.5052 0.0010 8 8 5.3832 -2.5556 0.0015 9 7 3.4475 -3.6436 0.0005 10 6 4.1268 -4.9415 0.0000 11 6 3.1009 -6.0455 -0.0011 12 6 2.6341 -6.5563 1.1956 13 6 1.6902 -7.5662 1.1947 14 6 1.2195 -8.0712 -0.0030 15 6 0.1939 -9.1754 -0.0041 16 1 -0.3109 -9.2015 -0.9697 17 6 0.8878 -10.5161 0.2451 18 7 -0.7889 -8.9300 1.0543 19 6 -2.0504 -9.4528 0.9517 20 1 -2.3210 -10.0456 0.0904 21 6 -2.9819 -9.2198 1.9543 22 7 -2.6523 -8.4970 3.0037 23 14 -4.7030 -9.9323 1.8141 24 1 -4.6210 -11.4131 1.7375 25 1 -5.4988 -9.5421 3.0055 26 1 -5.3570 -9.4087 0.5880 27 6 1.6898 -7.5636 -1.1996 28 6 2.6309 -6.5510 -1.1987 29 7 2.1555 -1.1439 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6486 2.1398 -0.0007 34 1 4.1320 2.1271 0.0001 35 1 5.3126 -0.0610 -0.0091 36 1 2.4783 -3.6034 0.0005 37 1 4.7506 -5.0248 -0.8900 38 1 4.7505 -5.0256 0.8900 39 1 3.0044 -6.1640 2.1312 40 1 1.3230 -7.9630 2.1296 41 1 0.1461 -11.3148 0.2439 42 1 1.6190 -10.6986 -0.5423 43 1 1.3926 -10.4900 1.2109 44 1 -0.5461 -8.3973 1.8278 45 1 -3.3034 -8.3340 3.7041 46 1 1.3224 -7.9584 -2.1354 47 1 2.9985 -6.1545 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672933420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:46 Heat of formation + Delta-G solvation = 29.084075 kcal Electronic energy + Delta-G solvation = -27534.377601 eV Core-core repulsion = 23681.871009 eV Total energy + Delta-G solvation = -3852.506591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93363 -39.60641 -38.89588 -35.98519 -34.57806 -33.34254 -32.96015 -32.22053 -30.69386 -30.24134 -28.38581 -28.06775 -26.36252 -24.54945 -23.79997 -22.62997 -22.43270 -21.58998 -20.84596 -19.71018 -18.36108 -17.42620 -16.93031 -16.47199 -15.82269 -15.73695 -15.60325 -15.12897 -14.95854 -14.49853 -14.49454 -14.23640 -13.81549 -13.46503 -13.45109 -13.37376 -13.12961 -12.89212 -12.76349 -12.55716 -12.37665 -12.29799 -12.23260 -11.93262 -11.64059 -11.14768 -10.90143 -10.82594 -10.60284 -10.57041 -10.31151 -10.30871 -10.01067 -9.83294 -9.67438 -9.39909 -9.14012 -8.97339 -8.61374 -8.30303 -6.99899 -5.78607 -3.07338 0.32713 0.84337 1.48902 1.71513 2.50683 3.02423 3.42960 3.47399 3.48280 3.54869 3.75013 4.10592 4.30872 4.49141 4.57980 4.61028 4.69571 4.74397 5.00786 5.04328 5.20976 5.23924 5.24796 5.31263 5.32615 5.41200 5.56012 5.57055 5.66389 5.73053 5.73984 5.77994 5.80438 5.98199 6.03623 6.21910 6.25733 6.27184 6.33113 6.37232 6.51490 6.63484 6.73864 6.79444 6.96260 7.17561 7.24881 7.30647 7.54997 7.67898 8.00427 8.39695 9.50976 10.06758 10.42092 11.43970 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.002390 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.463712 B =11714.798700 C =13625.165417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.130 3.870 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.120 4.120 6 C 0.085 3.915 7 C 0.570 3.430 8 O -0.538 6.538 9 N -0.702 5.702 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.106 4.106 14 C -0.053 4.053 15 C 0.204 3.796 16 H 0.056 0.944 17 C -0.159 4.159 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C -0.101 4.101 29 N -0.457 5.457 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.415 0.585 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 18.041 -7.635 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.011 4.011 3 C -0.171 4.171 4 C -0.105 4.105 5 C -0.141 4.141 6 C -0.053 4.053 7 C 0.354 3.646 8 O -0.415 6.415 9 N -0.353 5.353 10 C 0.043 3.957 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.124 4.124 14 C -0.054 4.054 15 C 0.094 3.906 16 H 0.074 0.926 17 C -0.220 4.220 18 N -0.363 5.363 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.140 4.140 28 C -0.119 4.119 29 N -0.170 5.170 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.139 0.861 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.370 17.089 -7.660 23.010 hybrid contribution -0.935 0.634 0.282 1.165 sum 12.435 17.723 -7.378 22.873 Atomic orbital electron populations 1.20784 0.88039 1.04116 1.03552 1.21378 0.97348 0.87810 0.94516 1.22220 0.95047 0.99519 1.00361 1.21627 0.94434 0.98308 0.96120 1.22105 1.02278 0.91797 0.97948 1.21134 0.89710 0.94117 1.00375 1.17894 0.86443 0.83323 0.76916 1.90779 1.12981 1.87128 1.50642 1.46021 1.11572 1.04832 1.72863 1.20214 0.93081 0.79548 1.02867 1.19619 1.00504 0.99102 0.93907 1.21015 0.96976 0.96568 0.97049 1.21078 0.96144 0.96483 0.98685 1.20526 0.95566 0.96491 0.92804 1.19248 0.87766 0.89690 0.93896 0.92634 1.22422 0.99809 0.99532 1.00207 1.42515 1.09385 1.62691 1.21753 1.19197 0.88187 1.25748 1.03969 0.91141 1.24736 0.98389 1.00690 0.97016 1.69646 1.34724 1.43314 1.10359 0.86265 0.84450 0.78645 0.76807 1.21259 1.21699 1.21259 1.21008 0.97871 0.97324 0.97798 1.20916 0.97262 0.96834 0.96932 1.67415 1.08493 1.30276 1.10833 0.90026 0.89790 0.90435 0.84205 0.83999 0.83441 0.74837 0.90647 0.90571 0.86332 0.85380 0.92403 0.94316 0.93309 0.77983 0.93422 0.86130 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.17 36.01 0.37 -0.39 16 2 C 0.13 1.20 6.78 -82.60 -0.56 0.64 16 3 C -0.15 -1.07 9.75 -39.32 -0.38 -1.45 16 4 C -0.08 -0.56 10.17 -39.31 -0.40 -0.96 16 5 C -0.12 -1.15 9.63 -39.06 -0.38 -1.53 16 6 C 0.08 1.00 6.75 -83.01 -0.56 0.44 16 7 C 0.57 7.55 7.81 -12.18 -0.10 7.45 16 8 O -0.54 -8.27 16.32 5.36 0.09 -8.18 16 9 N -0.70 -8.69 5.54 -62.33 -0.35 -9.03 16 10 C 0.17 1.98 5.80 -5.19 -0.03 1.95 16 11 C -0.13 -1.72 5.25 -104.62 -0.55 -2.27 16 12 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 13 C -0.11 -1.79 9.06 -39.58 -0.36 -2.15 16 14 C -0.05 -0.92 4.95 -104.62 -0.52 -1.43 16 15 C 0.20 4.04 3.09 -69.08 -0.21 3.83 16 16 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 17 C -0.16 -2.88 9.47 37.16 0.35 -2.53 16 18 N -0.72 -17.82 5.07 -54.55 -0.28 -18.10 16 19 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 23 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.12 -1.81 9.67 -39.58 -0.38 -2.19 16 28 C -0.10 -1.33 9.70 -39.58 -0.38 -1.72 16 29 N -0.46 -5.29 9.45 -6.06 -0.06 -5.35 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.15 1.31 7.64 -52.49 -0.40 0.91 16 36 H 0.41 5.15 7.79 -40.82 -0.32 4.83 16 37 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.13 2.33 6.92 -52.49 -0.36 1.97 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.39 10.02 6.07 -40.82 -0.25 9.77 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 47 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -32.50 401.21 -10.34 -42.84 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -6.77 Total: 12.99 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.72 Total: -11.27 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.05 Total: -59.58 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.50 -10.34 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.922 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds