Wall clock time and date at job start Tue Mar 31 2020 22:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38603 * 119.54972 * 2 1 4 4 C 1.38587 * 119.34759 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.28013 * 4 3 2 6 6 C 1.39264 * 119.06364 * 359.45280 * 5 4 3 7 7 C 1.48165 * 119.72722 * 180.25557 * 6 5 4 8 8 O 1.21512 * 119.99779 * 0.29946 * 7 6 5 9 9 N 1.34780 * 120.00496 * 180.30043 * 7 6 5 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.46959 * 180.02562 * 10 9 7 12 12 C 1.38233 * 119.99730 * 269.72639 * 11 10 9 13 13 C 1.38237 * 120.00174 * 179.80734 * 12 11 10 14 14 C 1.38235 * 119.99758 * 0.42424 * 13 12 11 15 15 C 1.50697 * 120.00311 * 179.79015 * 14 13 12 16 16 H 1.08991 * 109.47504 * 160.02090 * 15 14 13 17 17 C 1.53004 * 109.46754 * 280.02021 * 15 14 13 18 18 N 1.46498 * 109.47134 * 40.01686 * 15 14 13 19 19 C 1.36936 * 120.00122 * 155.00601 * 18 15 14 20 20 H 1.08002 * 119.99873 * 359.97438 * 19 18 15 21 21 C 1.38817 * 119.99937 * 180.02562 * 19 18 15 22 22 N 1.31611 * 120.00033 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47042 * 59.99943 * 23 21 19 25 25 H 1.48493 * 109.47101 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46988 * 300.00240 * 23 21 19 27 27 C 1.38238 * 119.99947 * 359.80478 * 14 13 12 28 28 C 1.38233 * 120.00078 * 89.99648 * 11 10 9 29 29 N 1.31492 * 119.54650 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47153 * 89.99424 * 1 2 3 31 31 H 1.08997 * 109.47299 * 210.00080 * 1 2 3 32 32 H 1.09001 * 109.46975 * 329.99927 * 1 2 3 33 33 H 1.07992 * 120.32569 * 359.95881 * 3 2 1 34 34 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.46727 * 179.72671 * 5 4 3 36 36 H 0.97001 * 119.99585 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47263 * 299.99710 * 10 9 7 38 38 H 1.08997 * 109.47384 * 60.00321 * 10 9 7 39 39 H 1.08004 * 119.99859 * 0.02562 * 12 11 10 40 40 H 1.08001 * 120.00025 * 180.20708 * 13 12 11 41 41 H 1.08998 * 109.46968 * 180.02562 * 17 15 14 42 42 H 1.09001 * 109.47185 * 299.99499 * 17 15 14 43 43 H 1.09004 * 109.47393 * 59.99749 * 17 15 14 44 44 H 0.97010 * 120.00159 * 335.00444 * 18 15 14 45 45 H 0.97005 * 119.99736 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.00410 * 179.97438 * 27 14 13 47 47 H 1.07995 * 119.99897 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0199 -0.0049 6 6 3.4821 -1.1925 0.0010 7 6 4.1691 -2.5052 0.0010 8 8 5.3832 -2.5556 0.0015 9 7 3.4475 -3.6436 0.0005 10 6 4.1268 -4.9415 0.0000 11 6 3.1009 -6.0455 -0.0011 12 6 2.6341 -6.5563 1.1956 13 6 1.6902 -7.5662 1.1947 14 6 1.2195 -8.0712 -0.0030 15 6 0.1939 -9.1754 -0.0041 16 1 -0.3109 -9.2015 -0.9697 17 6 0.8878 -10.5161 0.2451 18 7 -0.7889 -8.9300 1.0543 19 6 -2.0504 -9.4528 0.9517 20 1 -2.3210 -10.0456 0.0904 21 6 -2.9819 -9.2198 1.9543 22 7 -2.6523 -8.4970 3.0037 23 14 -4.7030 -9.9323 1.8141 24 1 -4.6210 -11.4131 1.7375 25 1 -5.4988 -9.5421 3.0055 26 1 -5.3570 -9.4087 0.5880 27 6 1.6898 -7.5636 -1.1996 28 6 2.6309 -6.5510 -1.1987 29 7 2.1555 -1.1439 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6486 2.1398 -0.0007 34 1 4.1320 2.1271 0.0001 35 1 5.3126 -0.0610 -0.0091 36 1 2.4783 -3.6034 0.0005 37 1 4.7506 -5.0248 -0.8900 38 1 4.7505 -5.0256 0.8900 39 1 3.0044 -6.1640 2.1312 40 1 1.3230 -7.9630 2.1296 41 1 0.1461 -11.3148 0.2439 42 1 1.6190 -10.6986 -0.5423 43 1 1.3926 -10.4900 1.2109 44 1 -0.5461 -8.3973 1.8278 45 1 -3.3034 -8.3340 3.7041 46 1 1.3224 -7.9584 -2.1354 47 1 2.9985 -6.1545 -2.1336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672933420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:45 Heat of formation + Delta-G solvation = 9.420551 kcal Electronic energy + Delta-G solvation = -27535.230275 eV Core-core repulsion = 23681.871009 eV Total energy + Delta-G solvation = -3853.359266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71498 -40.70126 -39.94074 -37.45562 -35.85848 -34.20277 -33.98646 -33.49443 -31.93298 -31.61986 -30.04821 -28.74611 -27.43518 -25.95600 -25.18563 -23.81222 -23.22064 -22.82507 -21.77041 -21.10744 -19.40898 -19.21148 -17.75605 -17.32971 -17.00140 -16.79447 -16.58238 -16.45640 -16.10203 -15.89649 -15.45617 -15.28004 -14.98848 -14.96367 -14.62136 -14.44574 -14.27460 -14.02534 -13.77720 -13.65569 -13.42495 -13.20369 -13.11864 -13.05283 -12.89257 -12.82162 -12.69974 -12.43003 -12.18456 -12.02283 -11.60596 -11.59608 -11.48614 -10.98689 -10.94701 -10.57536 -10.28459 -9.94478 -9.80103 -9.56387 -9.02119 -7.93138 -5.21710 -0.39015 0.21782 0.29114 0.52247 1.47582 1.50502 1.56404 1.63778 2.07789 2.56775 2.80318 2.87027 3.07047 3.40934 3.61820 3.71450 3.85740 3.87003 3.97921 4.01780 4.03981 4.08572 4.13951 4.33896 4.44070 4.53122 4.58218 4.58827 4.64488 4.75153 4.77085 4.78147 4.80058 5.00620 5.05477 5.09795 5.11206 5.11864 5.20332 5.21372 5.26983 5.41252 5.50764 5.54704 5.61775 5.64267 5.82837 6.08468 6.28754 6.31962 6.77016 7.04140 7.34901 8.09504 8.33849 9.30271 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.002390 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.463712 B =11714.798700 C =13625.165417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.110 3.890 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.127 4.127 6 C 0.055 3.945 7 C 0.568 3.432 8 O -0.567 6.567 9 N -0.700 5.700 10 C 0.169 3.831 11 C -0.118 4.118 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.073 4.073 15 C 0.199 3.801 16 H 0.056 0.944 17 C -0.149 4.149 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.278 1.278 27 C -0.121 4.121 28 C -0.093 4.093 29 N -0.484 5.484 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.149 0.851 36 H 0.414 0.586 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.139 0.861 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.554 20.032 -9.444 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.098 4.098 5 C -0.148 4.148 6 C -0.082 4.082 7 C 0.354 3.646 8 O -0.446 6.446 9 N -0.350 5.350 10 C 0.047 3.953 11 C -0.118 4.118 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.074 4.074 15 C 0.091 3.909 16 H 0.073 0.927 17 C -0.209 4.209 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.095 0.905 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.204 1.204 27 C -0.139 4.139 28 C -0.111 4.111 29 N -0.197 5.197 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.195 0.805 34 H 0.196 0.804 35 H 0.166 0.834 36 H 0.251 0.749 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.157 0.843 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.825 19.049 -9.517 25.388 hybrid contribution -0.986 0.118 0.782 1.264 sum 12.839 19.167 -8.734 24.668 Atomic orbital electron populations 1.20839 0.86874 1.04441 1.04116 1.21864 0.98337 0.88155 0.94665 1.22638 0.95222 1.00067 0.97874 1.22059 0.94729 0.98602 0.94424 1.22274 1.02436 0.92243 0.97840 1.21013 0.90221 0.93921 1.03089 1.18198 0.86200 0.84067 0.76134 1.90747 1.14040 1.87632 1.52181 1.45997 1.11489 1.04883 1.72614 1.20203 0.92639 0.78977 1.03499 1.19734 0.99891 0.98712 0.93468 1.21121 0.96356 0.95893 0.98344 1.20960 0.97515 0.97863 0.97805 1.20338 0.96207 0.96821 0.93999 1.19414 0.87690 0.91528 0.92234 0.92652 1.22260 0.99843 0.97854 1.00919 1.42717 1.09660 1.62468 1.22737 1.19603 0.89208 1.24681 1.03648 0.90494 1.25542 1.02245 1.01935 0.97085 1.69813 1.35654 1.45373 1.11233 0.85230 0.79946 0.78135 0.76565 1.20440 1.22330 1.20372 1.21195 0.97876 0.97374 0.97450 1.21215 0.96099 0.95732 0.98046 1.67338 1.08522 1.31926 1.11900 0.89292 0.91694 0.87875 0.80547 0.80361 0.83360 0.74893 0.89578 0.90468 0.85200 0.87751 0.93798 0.91176 0.94139 0.79254 0.94096 0.84275 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.17 71.24 0.72 -0.61 16 2 C 0.11 1.87 6.78 42.70 0.29 2.16 16 3 C -0.14 -1.52 9.75 22.44 0.22 -1.30 16 4 C -0.07 -0.82 10.17 22.45 0.23 -0.59 16 5 C -0.13 -2.29 9.63 22.61 0.22 -2.07 16 6 C 0.05 1.28 6.75 41.89 0.28 1.56 16 7 C 0.57 15.10 7.81 86.88 0.68 15.78 16 8 O -0.57 -17.48 16.32 -3.75 -0.06 -17.54 16 9 N -0.70 -17.09 5.54 -469.40 -2.60 -19.69 16 10 C 0.17 3.86 5.80 85.64 0.50 4.36 16 11 C -0.12 -2.95 5.25 -19.87 -0.10 -3.05 16 12 C -0.10 -2.85 9.70 22.27 0.22 -2.64 16 13 C -0.12 -4.29 9.06 22.27 0.20 -4.09 16 14 C -0.07 -2.52 4.95 -19.87 -0.10 -2.62 16 15 C 0.20 7.97 3.09 44.25 0.14 8.11 16 16 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 17 C -0.15 -5.36 9.47 71.98 0.68 -4.68 16 18 N -0.73 -37.33 5.07 -326.51 -1.66 -38.98 16 19 C -0.24 -13.31 9.93 84.03 0.83 -12.48 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 22 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 23 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 C -0.12 -3.39 9.67 22.27 0.22 -3.18 16 28 C -0.09 -2.24 9.70 22.27 0.22 -2.02 16 29 N -0.48 -11.04 9.45 -173.08 -1.64 -12.68 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.15 2.54 7.64 -2.91 -0.02 2.52 16 36 H 0.41 10.26 7.79 -92.71 -0.72 9.54 16 37 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 38 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.10 4.08 6.92 -2.91 -0.02 4.06 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.37 20.40 6.07 -92.70 -0.56 19.84 16 45 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 46 H 0.14 3.35 8.04 -2.91 -0.02 3.33 16 47 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -72.46 401.21 1.97 -70.49 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.29 Total: 40.83 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 5.90 Total: -11.27 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -5.61 Total: -130.77 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.06 Total: -17.54 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.46 1.97 -70.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672933420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.915 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds