Wall clock time and date at job start Tue Mar 31 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.46173 * 2 1 4 4 C 1.38356 * 119.30550 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28659 * 359.97438 * 4 3 2 6 6 C 1.47842 * 120.55568 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99453 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99588 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46714 * 179.97438 * 9 8 6 11 11 C 1.38238 * 120.00061 * 90.00413 * 10 9 8 12 12 C 1.38231 * 120.00283 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.00064 * 359.95296 * 12 11 10 14 14 C 1.50694 * 120.00169 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.46809 * 339.99895 * 14 13 12 16 16 C 1.52999 * 109.47496 * 99.99822 * 14 13 12 17 17 N 1.46498 * 109.47285 * 219.99868 * 14 13 12 18 18 C 1.36935 * 120.00239 * 154.99618 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 C 1.38235 * 119.99716 * 0.27420 * 13 12 11 27 27 C 1.38233 * 120.00224 * 359.51828 * 26 13 12 28 28 C 1.39520 * 118.88069 * 0.25812 * 5 4 3 29 29 N 1.31695 * 120.56628 * 359.44845 * 28 5 4 30 30 H 1.09004 * 109.47163 * 90.00136 * 1 2 3 31 31 H 1.08996 * 109.47381 * 210.00012 * 1 2 3 32 32 H 1.08997 * 109.47243 * 330.00436 * 1 2 3 33 33 H 1.08003 * 120.34813 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.85357 * 179.97438 * 4 3 2 35 35 H 0.96995 * 120.00527 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46964 * 59.99965 * 9 8 6 37 37 H 1.08996 * 109.46862 * 299.99748 * 9 8 6 38 38 H 1.08001 * 119.99496 * 359.97387 * 11 10 9 39 39 H 1.07998 * 119.99888 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.47033 * 60.00210 * 16 14 13 41 41 H 1.08994 * 109.47214 * 179.97438 * 16 14 13 42 42 H 1.08994 * 109.47102 * 300.00274 * 16 14 13 43 43 H 0.97004 * 119.99747 * 335.00358 * 17 14 13 44 44 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 45 45 H 1.08008 * 119.99837 * 179.72363 * 26 13 12 46 46 H 1.08003 * 120.00420 * 180.25020 * 27 26 13 47 47 H 1.08001 * 119.71389 * 179.74101 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.3601 0.9294 0.0012 8 7 6.3321 -1.2913 0.0022 9 6 7.7958 -1.3534 0.0028 10 6 8.2374 -2.7942 0.0039 11 6 8.4405 -3.4558 -1.1927 12 6 8.8461 -4.7773 -1.1917 13 6 9.0496 -5.4369 0.0059 14 6 9.4923 -6.8774 0.0070 15 1 9.2627 -7.3288 -0.9583 16 6 11.0001 -6.9474 0.2570 17 7 8.7875 -7.6041 1.0659 18 6 8.6087 -8.9580 0.9651 19 1 8.9876 -9.4901 0.1050 20 6 7.9404 -9.6465 1.9682 21 7 7.4834 -8.9988 3.0189 22 14 7.6971 -11.4935 1.8310 23 1 6.4152 -11.7735 1.1354 24 1 8.8190 -12.0845 1.0581 25 1 7.6635 -12.0907 3.1901 26 6 8.8420 -4.7767 1.2025 27 6 8.4405 -3.4540 1.2016 28 6 3.4716 -1.2043 -0.0034 29 7 2.1558 -1.1487 0.0019 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6443 2.1381 0.0004 34 1 4.1274 2.1265 0.0001 35 1 5.8120 -2.1101 0.0029 36 1 8.1802 -0.8552 0.8928 37 1 8.1809 -0.8556 -0.8871 38 1 8.2823 -2.9402 -2.1284 39 1 9.0044 -5.2943 -2.1266 40 1 11.2297 -6.4960 1.2223 41 1 11.3202 -7.9893 0.2582 42 1 11.5245 -6.4068 -0.5308 43 1 8.4475 -7.1262 1.8385 44 1 7.6101 -8.0397 3.0905 45 1 8.9966 -5.2935 2.1383 46 1 8.2822 -2.9370 2.1365 47 1 3.9669 -2.1640 -0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672934225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:53 Heat of formation + Delta-G solvation = 29.317591 kcal Electronic energy + Delta-G solvation = -27395.584764 eV Core-core repulsion = 23543.088299 eV Total energy + Delta-G solvation = -3852.496465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01084 -39.75662 -39.05403 -36.17579 -34.80010 -33.54550 -32.81234 -32.49523 -30.83698 -30.45082 -28.60227 -28.02234 -25.97685 -24.22388 -23.77825 -23.10423 -22.63412 -21.77625 -20.92339 -19.93408 -18.49838 -17.48499 -17.26307 -16.43604 -16.06510 -15.79505 -15.72104 -15.26715 -15.12455 -14.70869 -14.61719 -14.20318 -13.77528 -13.69067 -13.55385 -13.44430 -13.27371 -13.13099 -12.89060 -12.72518 -12.56682 -12.51383 -12.45961 -12.01594 -11.70148 -11.27855 -10.97676 -10.72968 -10.59768 -10.44807 -10.32486 -10.26486 -10.02947 -9.81597 -9.52476 -9.27332 -9.24358 -9.01283 -8.76767 -8.44248 -7.09892 -6.14227 -3.14380 0.23312 0.80927 1.33631 1.56122 2.52128 2.92641 3.44268 3.49748 3.54397 3.68267 3.75196 3.95076 4.24447 4.38273 4.43466 4.52960 4.63743 4.65165 4.87334 4.87529 5.09897 5.10126 5.15753 5.17267 5.19094 5.27641 5.46458 5.52428 5.56287 5.60347 5.63417 5.64681 5.67913 5.82945 5.90824 6.06291 6.13339 6.16158 6.19829 6.22988 6.36090 6.50808 6.60083 6.63999 6.84677 7.03289 7.13908 7.18415 7.47433 7.77308 7.85943 8.71229 9.16983 10.03305 10.17829 11.33932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.002255 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.369728 B =12413.084752 C =14363.425773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.150 3.850 3 C -0.181 4.181 4 C -0.013 4.013 5 C -0.196 4.196 6 C 0.564 3.436 7 O -0.538 6.538 8 N -0.718 5.718 9 C 0.168 3.832 10 C -0.132 4.132 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.053 4.053 14 C 0.209 3.791 15 H 0.057 0.943 16 C -0.159 4.159 17 N -0.732 5.732 18 C -0.331 4.331 19 H 0.066 0.934 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.082 2.918 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.288 1.288 26 C -0.109 4.109 27 C -0.097 4.097 28 C 0.144 3.856 29 N -0.486 5.486 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.403 0.597 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.368 0.632 44 H 0.255 0.745 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 21.301 -8.187 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.013 3.987 3 C -0.201 4.201 4 C -0.039 4.039 5 C -0.201 4.201 6 C 0.351 3.649 7 O -0.417 6.417 8 N -0.370 5.370 9 C 0.046 3.954 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.139 4.139 13 C -0.055 4.055 14 C 0.099 3.901 15 H 0.075 0.925 16 C -0.219 4.219 17 N -0.376 5.376 18 C -0.462 4.462 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.913 3.087 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.128 4.128 27 C -0.116 4.116 28 C -0.015 4.015 29 N -0.195 5.195 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.239 0.761 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.202 0.798 44 H 0.066 0.934 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.081 19.766 -7.601 22.666 hybrid contribution 0.923 1.765 -0.540 2.064 sum -7.157 21.531 -8.141 24.106 Atomic orbital electron populations 1.20811 0.88327 1.03982 1.03528 1.21609 0.97485 0.88292 0.91364 1.21988 0.94488 0.99631 1.04002 1.21727 0.94046 0.97917 0.90243 1.20975 0.94354 0.95682 1.09070 1.18033 0.86767 0.83697 0.76442 1.90777 1.66927 1.33868 1.50081 1.46079 1.07871 1.08219 1.74789 1.20179 0.78961 0.93285 1.03022 1.19643 1.04800 0.94996 0.93850 1.20950 0.99240 0.94617 0.97030 1.21025 1.00611 0.94451 0.97814 1.20564 0.95150 0.96889 0.92858 1.19190 0.91113 0.86041 0.93728 0.92484 1.22401 0.97809 1.01552 1.00152 1.42525 1.67727 1.05671 1.21693 1.20068 1.34924 0.84114 1.07086 0.91611 1.25777 0.98109 1.06519 0.93779 1.70858 1.48833 1.09420 1.29673 0.83197 0.75647 0.74272 0.75555 1.22286 1.22128 1.21371 1.21047 0.99217 0.93972 0.98534 1.21023 0.98756 0.94660 0.97140 1.23025 0.89458 0.97567 0.91453 1.67580 1.09511 1.29142 1.13279 0.89866 0.89962 0.90330 0.83969 0.83442 0.76090 0.90521 0.90550 0.86313 0.86006 0.93441 0.92293 0.94176 0.79765 0.93424 0.85708 0.86215 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.16 36.00 0.37 -0.24 16 2 C 0.15 1.28 6.78 -82.51 -0.56 0.72 16 3 C -0.18 -1.34 9.72 -39.50 -0.38 -1.72 16 4 C -0.01 -0.12 9.72 -38.87 -0.38 -0.49 16 5 C -0.20 -1.99 5.89 -104.82 -0.62 -2.61 16 6 C 0.56 6.56 7.78 -12.33 -0.10 6.46 16 7 O -0.54 -7.83 16.42 5.32 0.09 -7.74 16 8 N -0.72 -7.36 5.50 -62.43 -0.34 -7.70 16 9 C 0.17 1.79 5.80 -5.19 -0.03 1.76 16 10 C -0.13 -1.58 5.25 -104.62 -0.55 -2.13 16 11 C -0.10 -1.21 9.70 -39.58 -0.38 -1.60 16 12 C -0.12 -1.71 9.67 -39.59 -0.38 -2.09 16 13 C -0.05 -0.90 4.96 -104.63 -0.52 -1.41 16 14 C 0.21 4.11 3.09 -69.09 -0.21 3.89 16 15 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 16 C -0.16 -2.86 9.47 37.16 0.35 -2.51 16 17 N -0.73 -17.88 5.07 -54.55 -0.28 -18.15 16 18 C -0.33 -9.12 9.93 -15.06 -0.15 -9.27 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 21 N -0.94 -28.78 13.70 55.49 0.76 -28.02 16 22 Si 1.08 25.70 29.92 -169.99 -5.09 20.62 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.11 -1.76 9.06 -39.58 -0.36 -2.12 16 27 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 28 C 0.14 1.43 10.71 -17.13 -0.18 1.24 16 29 N -0.49 -5.18 10.25 -9.14 -0.09 -5.27 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 33 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 34 H 0.15 1.20 7.74 -52.49 -0.41 0.80 16 35 H 0.40 3.63 6.53 -40.82 -0.27 3.37 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.37 9.19 4.88 -40.82 -0.20 8.99 16 44 H 0.25 7.63 6.77 -40.82 -0.28 7.35 16 45 H 0.13 2.15 6.90 -52.48 -0.36 1.79 16 46 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 47 H 0.16 1.30 6.42 -52.49 -0.34 0.97 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -34.06 397.26 -10.06 -44.12 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.53 Total: 11.32 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -4.57 Total: -15.16 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.05 Total: -59.14 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.09 Total: 20.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.06 -10.06 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672934225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.439 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds