Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38352 * 119.46173 * 2 1 4 4 C 1.38356 * 119.30550 * 179.97438 * 3 2 1 5 5 C 1.40027 * 118.28659 * 359.97438 * 4 3 2 6 6 C 1.47842 * 120.55568 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99453 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99588 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46714 * 179.97438 * 9 8 6 11 11 C 1.38238 * 120.00061 * 90.00413 * 10 9 8 12 12 C 1.38231 * 120.00283 * 179.97438 * 11 10 9 13 13 C 1.38232 * 120.00064 * 359.95296 * 12 11 10 14 14 C 1.50694 * 120.00169 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.46809 * 339.99895 * 14 13 12 16 16 C 1.52999 * 109.47496 * 99.99822 * 14 13 12 17 17 N 1.46498 * 109.47285 * 219.99868 * 14 13 12 18 18 C 1.36935 * 120.00239 * 154.99618 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 C 1.38235 * 119.99716 * 0.27420 * 13 12 11 27 27 C 1.38233 * 120.00224 * 359.51828 * 26 13 12 28 28 C 1.39520 * 118.88069 * 0.25812 * 5 4 3 29 29 N 1.31695 * 120.56628 * 359.44845 * 28 5 4 30 30 H 1.09004 * 109.47163 * 90.00136 * 1 2 3 31 31 H 1.08996 * 109.47381 * 210.00012 * 1 2 3 32 32 H 1.08997 * 109.47243 * 330.00436 * 1 2 3 33 33 H 1.08003 * 120.34813 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.85357 * 179.97438 * 4 3 2 35 35 H 0.96995 * 120.00527 * 359.97438 * 8 6 5 36 36 H 1.09001 * 109.46964 * 59.99965 * 9 8 6 37 37 H 1.08996 * 109.46862 * 299.99748 * 9 8 6 38 38 H 1.08001 * 119.99496 * 359.97387 * 11 10 9 39 39 H 1.07998 * 119.99888 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.47033 * 60.00210 * 16 14 13 41 41 H 1.08994 * 109.47214 * 179.97438 * 16 14 13 42 42 H 1.08994 * 109.47102 * 300.00274 * 16 14 13 43 43 H 0.97004 * 119.99747 * 335.00358 * 17 14 13 44 44 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 45 45 H 1.08008 * 119.99837 * 179.72363 * 26 13 12 46 46 H 1.08003 * 120.00420 * 180.25020 * 27 26 13 47 47 H 1.08001 * 119.71389 * 179.74101 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2312 -0.0340 0.0016 6 6 5.7083 -0.0966 0.0017 7 8 6.3601 0.9294 0.0012 8 7 6.3321 -1.2913 0.0022 9 6 7.7958 -1.3534 0.0028 10 6 8.2374 -2.7942 0.0039 11 6 8.4405 -3.4558 -1.1927 12 6 8.8461 -4.7773 -1.1917 13 6 9.0496 -5.4369 0.0059 14 6 9.4923 -6.8774 0.0070 15 1 9.2627 -7.3288 -0.9583 16 6 11.0001 -6.9474 0.2570 17 7 8.7875 -7.6041 1.0659 18 6 8.6087 -8.9580 0.9651 19 1 8.9876 -9.4901 0.1050 20 6 7.9404 -9.6465 1.9682 21 7 7.4834 -8.9988 3.0189 22 14 7.6971 -11.4935 1.8310 23 1 6.4152 -11.7735 1.1354 24 1 8.8190 -12.0845 1.0581 25 1 7.6635 -12.0907 3.1901 26 6 8.8420 -4.7767 1.2025 27 6 8.4405 -3.4540 1.2016 28 6 3.4716 -1.2043 -0.0034 29 7 2.1558 -1.1487 0.0019 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 1.6443 2.1381 0.0004 34 1 4.1274 2.1265 0.0001 35 1 5.8120 -2.1101 0.0029 36 1 8.1802 -0.8552 0.8928 37 1 8.1809 -0.8556 -0.8871 38 1 8.2823 -2.9402 -2.1284 39 1 9.0044 -5.2943 -2.1266 40 1 11.2297 -6.4960 1.2223 41 1 11.3202 -7.9893 0.2582 42 1 11.5245 -6.4068 -0.5308 43 1 8.4475 -7.1262 1.8385 44 1 7.6101 -8.0397 3.0905 45 1 8.9966 -5.2935 2.1383 46 1 8.2822 -2.9370 2.1365 47 1 3.9669 -2.1640 -0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672934225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = 8.438801 kcal Electronic energy + Delta-G solvation = -27396.490137 eV Core-core repulsion = 23543.088299 eV Total energy + Delta-G solvation = -3853.401838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76290 -40.78120 -40.03189 -37.64797 -36.00793 -34.48120 -34.02616 -33.40926 -31.98632 -31.69777 -29.98616 -29.08272 -27.01080 -25.71798 -24.91361 -24.06002 -23.66016 -23.00188 -21.74312 -21.26617 -19.48814 -19.29643 -18.04325 -17.72845 -16.91357 -16.84089 -16.54341 -16.24637 -16.20159 -15.80948 -15.60502 -15.46667 -15.36005 -15.01663 -14.62212 -14.44660 -14.34955 -14.21692 -13.95983 -13.67695 -13.39268 -13.25947 -13.21351 -13.07953 -12.99799 -12.89808 -12.56747 -12.33014 -11.96997 -11.84178 -11.73915 -11.47847 -11.25094 -11.01876 -11.00500 -10.54510 -10.34512 -9.99372 -9.87327 -9.63882 -9.13946 -8.38814 -5.32636 -0.47041 0.15243 0.21732 0.44966 1.58035 1.68614 1.69991 1.82452 2.04621 2.70429 2.73511 2.84281 3.14094 3.40983 3.57004 3.64150 3.70285 3.73947 3.77222 3.87184 3.90604 3.96914 4.07562 4.26626 4.26781 4.44909 4.50844 4.57012 4.63112 4.66306 4.69480 4.71648 4.77775 4.89414 4.97934 5.00024 5.02318 5.04646 5.13592 5.14032 5.21315 5.31912 5.46448 5.55182 5.56365 5.58672 5.75526 6.01324 6.32980 6.49692 6.80738 6.99610 7.09114 7.99290 8.10976 9.13001 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.002255 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.369728 B =12413.084752 C =14363.425773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.140 3.860 3 C -0.172 4.172 4 C -0.021 4.021 5 C -0.209 4.209 6 C 0.567 3.433 7 O -0.571 6.571 8 N -0.711 5.711 9 C 0.172 3.828 10 C -0.116 4.116 11 C -0.090 4.090 12 C -0.121 4.121 13 C -0.075 4.075 14 C 0.204 3.796 15 H 0.053 0.947 16 C -0.148 4.148 17 N -0.746 5.746 18 C -0.327 4.327 19 H 0.068 0.932 20 C -0.106 4.106 21 N -0.976 5.976 22 Si 1.129 2.871 23 H -0.285 1.285 24 H -0.273 1.273 25 H -0.295 1.295 26 C -0.127 4.127 27 C -0.096 4.096 28 C 0.137 3.863 29 N -0.514 5.514 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.410 0.590 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.361 0.639 44 H 0.243 0.757 45 H 0.102 0.898 46 H 0.134 0.866 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 22.915 -9.959 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.003 3.997 3 C -0.191 4.191 4 C -0.047 4.047 5 C -0.214 4.214 6 C 0.355 3.645 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.050 3.950 10 C -0.116 4.116 11 C -0.108 4.108 12 C -0.140 4.140 13 C -0.076 4.076 14 C 0.096 3.904 15 H 0.071 0.929 16 C -0.208 4.208 17 N -0.389 5.389 18 C -0.458 4.458 19 H 0.086 0.914 20 C -0.297 4.297 21 N -0.625 5.625 22 Si 0.954 3.046 23 H -0.212 1.212 24 H -0.198 1.198 25 H -0.221 1.221 26 C -0.146 4.146 27 C -0.115 4.115 28 C -0.021 4.021 29 N -0.224 5.224 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.194 0.806 44 H 0.053 0.947 45 H 0.120 0.880 46 H 0.152 0.848 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.874 21.390 -9.420 25.000 hybrid contribution 1.162 1.409 -0.056 1.827 sum -7.712 22.798 -9.476 25.866 Atomic orbital electron populations 1.20915 0.86280 1.04818 1.04468 1.22185 0.98958 0.88169 0.90374 1.22317 0.93875 1.00646 1.02289 1.21943 0.94953 0.97692 0.90134 1.20917 0.93479 0.96464 1.10579 1.18211 0.87285 0.83365 0.75665 1.90756 1.67667 1.34890 1.51893 1.45999 1.07764 1.08297 1.74170 1.20146 0.79168 0.92139 1.03594 1.19752 1.03184 0.95407 0.93278 1.21250 0.97494 0.93762 0.98291 1.21195 1.00170 0.95302 0.97286 1.20328 0.97571 0.95492 0.94246 1.19347 0.91527 0.87663 0.91868 0.92943 1.22241 0.96846 1.00771 1.00949 1.42724 1.68273 1.05071 1.22841 1.20402 1.33213 0.85718 1.06486 0.91441 1.27157 0.98596 1.10287 0.93634 1.70965 1.51298 1.08940 1.31261 0.82602 0.76645 0.69915 0.75454 1.21204 1.19795 1.22110 1.20943 1.00902 0.95190 0.97542 1.21144 0.98155 0.93598 0.98566 1.23158 0.89533 0.97925 0.91515 1.67616 1.09824 1.30562 1.14432 0.88725 0.90793 0.87841 0.80613 0.82939 0.75318 0.90489 0.89589 0.83255 0.84467 0.94137 0.94045 0.91010 0.80567 0.94652 0.88022 0.84841 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.16 71.24 0.72 -0.23 16 2 C 0.14 2.15 6.78 42.57 0.29 2.44 16 3 C -0.17 -2.14 9.72 22.32 0.22 -1.93 16 4 C -0.02 -0.35 9.72 22.73 0.22 -0.13 16 5 C -0.21 -4.08 5.89 -19.99 -0.12 -4.20 16 6 C 0.57 12.61 7.78 86.79 0.68 13.29 16 7 O -0.57 -16.13 16.42 -3.87 -0.06 -16.19 16 8 N -0.71 -13.48 5.50 -469.71 -2.58 -16.06 16 9 C 0.17 3.30 5.80 85.63 0.50 3.79 16 10 C -0.12 -2.52 5.25 -19.87 -0.10 -2.62 16 11 C -0.09 -1.93 9.70 22.27 0.22 -1.71 16 12 C -0.12 -3.20 9.67 22.27 0.22 -2.99 16 13 C -0.08 -2.51 4.96 -19.87 -0.10 -2.61 16 14 C 0.20 8.09 3.09 44.24 0.14 8.22 16 15 H 0.05 2.10 7.94 -2.38 -0.02 2.08 16 16 C -0.15 -5.33 9.47 71.98 0.68 -4.65 16 17 N -0.75 -37.47 5.07 -326.51 -1.65 -39.13 16 18 C -0.33 -18.30 9.93 84.03 0.83 -17.47 16 19 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 20 C -0.11 -6.15 5.50 84.86 0.47 -5.68 16 21 N -0.98 -61.37 13.70 21.65 0.30 -61.07 16 22 Si 1.13 52.17 29.92 68.60 2.05 54.23 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 C -0.13 -4.16 9.06 22.27 0.20 -3.96 16 27 C -0.10 -2.49 9.70 22.27 0.22 -2.28 16 28 C 0.14 2.63 10.71 85.02 0.91 3.54 16 29 N -0.51 -10.54 10.25 -182.82 -1.87 -12.42 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.39 8.07 -2.39 -0.02 0.37 16 33 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 34 H 0.15 2.30 7.74 -2.91 -0.02 2.28 16 35 H 0.41 6.79 6.53 -92.71 -0.61 6.18 16 36 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 37 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 38 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.14 3.15 8.04 -2.91 -0.02 3.13 16 40 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.36 18.93 4.88 -92.71 -0.45 18.48 16 44 H 0.24 15.24 6.77 -92.71 -0.63 14.61 16 45 H 0.10 3.74 6.90 -2.91 -0.02 3.72 16 46 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.17 2.66 6.42 -2.91 -0.02 2.64 16 Total: -1.00 -75.11 397.26 2.44 -72.67 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: 0.08 Total: 37.13 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 6.18 Total: -19.16 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -5.82 Total: -128.68 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.06 Total: -16.19 kcal Atomic # 14 Polarization: 52.17 SS G_CDS: 2.05 Total: 54.23 kcal Total: -75.11 2.44 -72.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672934225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.113 kcal (2) G-P(sol) polarization free energy of solvation -75.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds