Wall clock time and date at job start Tue Mar 31 2020 22:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.22482 * 2 1 4 4 C 1.33794 * 121.72162 * 180.02562 * 3 2 1 5 5 C 1.40527 * 120.83169 * 180.02562 * 4 3 2 6 6 C 1.36126 * 119.81608 * 179.97438 * 5 4 3 7 7 C 1.39348 * 121.09558 * 359.97438 * 6 5 4 8 8 C 1.36134 * 120.83638 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.61915 * 359.97438 * 8 7 6 10 10 C 1.40489 * 121.22537 * 180.30459 * 9 8 7 11 11 C 1.39050 * 117.96295 * 180.20719 * 10 9 8 12 12 C 1.47758 * 120.26671 * 179.74102 * 11 10 9 13 13 O 1.21567 * 119.99388 * 173.39720 * 12 11 10 14 14 N 1.34774 * 120.00301 * 353.40245 * 12 11 10 15 15 C 1.46502 * 119.99847 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46864 * 185.02582 * 15 14 12 17 17 N 1.46503 * 112.90794 * 293.66963 * 16 15 14 18 18 C 1.36934 * 120.00045 * 305.90185 * 17 16 15 19 19 H 1.07997 * 120.00053 * 3.44507 * 18 17 16 20 20 C 1.38811 * 120.00237 * 183.45225 * 18 17 16 21 21 N 1.31620 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47361 * 89.99653 * 22 20 18 24 24 H 1.48502 * 109.47062 * 210.00159 * 22 20 18 25 25 H 1.48504 * 109.47069 * 329.99759 * 22 20 18 26 26 C 1.53779 * 113.61921 * 64.92235 * 16 15 14 27 27 C 1.53778 * 87.08380 * 139.98146 * 26 16 15 28 28 C 1.53782 * 113.61604 * 162.42319 * 16 15 14 29 29 H 1.09004 * 109.47183 * 263.04965 * 1 2 3 30 30 H 1.08997 * 109.47644 * 23.05614 * 1 2 3 31 31 H 1.09003 * 109.46837 * 143.05777 * 1 2 3 32 32 H 1.08006 * 120.09006 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.45700 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.58615 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.19441 * 180.02562 * 8 7 6 36 36 H 1.08000 * 121.02381 * 359.97438 * 10 9 8 37 37 H 0.96997 * 119.99870 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.46779 * 65.02507 * 15 14 12 39 39 H 1.08996 * 109.47409 * 305.02095 * 15 14 12 40 40 H 0.97006 * 120.00132 * 125.88947 * 17 16 15 41 41 H 0.97002 * 120.00171 * 180.02562 * 21 20 18 42 42 H 1.08998 * 113.61061 * 25.42860 * 26 16 15 43 43 H 1.09002 * 113.61644 * 254.53329 * 26 16 15 44 44 H 1.09001 * 113.61175 * 89.11530 * 27 26 16 45 45 H 1.08998 * 113.61712 * 220.02032 * 27 26 16 46 46 H 1.08995 * 113.61532 * 105.46595 * 28 16 15 47 47 H 1.09002 * 113.68768 * 334.57487 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1417 0.0000 4 6 3.4824 1.2000 -0.0005 5 6 4.1494 2.4369 0.0000 6 6 5.5102 2.4721 0.0000 7 6 6.2605 1.2978 0.0000 8 6 5.6512 0.0804 -0.0005 9 6 4.2476 0.0061 -0.0005 10 6 3.5839 -1.2321 0.0054 11 6 2.1934 -1.2266 0.0005 12 6 1.4435 -2.4997 0.0006 13 8 0.2335 -2.4924 0.1174 14 7 2.1010 -3.6691 -0.1289 15 6 1.3575 -4.9314 -0.1283 16 6 2.3413 -6.1027 -0.1622 17 7 3.0973 -6.1764 -1.4149 18 6 2.4354 -6.2091 -2.6132 19 1 1.3590 -6.1245 -2.6380 20 6 3.1478 -6.3511 -3.7960 21 7 4.4597 -6.4538 -3.7659 22 14 2.2448 -6.3964 -5.4306 23 1 2.1167 -5.0164 -5.9639 24 1 3.0069 -7.2307 -6.3942 25 1 0.8928 -6.9783 -5.2333 26 6 3.2209 -6.2051 1.0951 27 6 3.0312 -7.7286 1.0080 28 6 1.7178 -7.4434 0.2607 29 1 -0.3634 -0.1244 1.0201 30 1 -0.3634 0.9455 -0.4024 31 1 -0.3633 -0.8214 -0.6177 32 1 3.5838 3.3570 0.0013 33 1 6.0168 3.4258 0.0009 34 1 7.3390 1.3542 -0.0004 35 1 6.2428 -0.8231 -0.0001 36 1 4.1366 -2.1599 0.0096 37 1 3.0665 -3.6749 -0.2217 38 1 0.7122 -4.9733 -1.0057 39 1 0.7489 -4.9942 0.7737 40 1 4.0669 -6.2018 -1.3955 41 1 4.9576 -6.5526 -4.5925 42 1 2.7696 -5.7587 1.9811 43 1 4.2501 -5.8834 0.9353 44 1 3.7823 -8.2278 0.3959 45 1 2.8873 -8.2068 1.9769 46 1 1.5335 -8.1213 -0.5726 47 1 0.8553 -7.3370 0.9186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673171955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:02 Heat of formation + Delta-G solvation = 52.730630 kcal Electronic energy + Delta-G solvation = -29114.350836 eV Core-core repulsion = 25262.869636 eV Total energy + Delta-G solvation = -3851.481200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11674 -39.56711 -38.57858 -37.07748 -34.41278 -33.50424 -33.27494 -31.86402 -30.54924 -29.99360 -28.01332 -27.07582 -25.29727 -24.69928 -23.87631 -22.69419 -22.26292 -21.74344 -20.54944 -18.71046 -18.12972 -17.62639 -17.12689 -16.82338 -15.78416 -15.49840 -15.35656 -15.04041 -14.66106 -14.52953 -14.35129 -14.19864 -14.03557 -13.53825 -13.44804 -13.23550 -13.03424 -12.95146 -12.74424 -12.12602 -12.01961 -11.90842 -11.76772 -11.60137 -11.42421 -11.35334 -11.07964 -10.89196 -10.62378 -10.43577 -10.26701 -10.13618 -9.87423 -9.72507 -9.55900 -9.32686 -8.94638 -8.88930 -8.52466 -8.39476 -7.11594 -5.88573 -3.18554 0.10461 0.55055 1.73694 2.52901 3.29639 3.38147 3.44025 3.44874 3.45727 3.99624 4.10075 4.40163 4.48690 4.52305 4.59752 4.63297 4.94159 5.00179 5.09293 5.12666 5.19654 5.23658 5.30318 5.40899 5.47040 5.53284 5.61832 5.71412 5.74344 5.77514 5.85915 5.94901 5.97470 6.07779 6.14064 6.14875 6.22336 6.24755 6.27328 6.32936 6.41640 6.46838 6.66469 6.70322 6.81197 6.91588 6.99649 7.64885 7.77936 7.87683 8.29497 8.46436 9.41678 9.93989 10.29111 11.33306 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.003381 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.659755 B = 8279.870808 C = 8822.487615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.213 3.787 3 N -0.486 5.486 4 C 0.149 3.851 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.128 4.128 8 C -0.081 4.081 9 C -0.118 4.118 10 C -0.011 4.011 11 C -0.181 4.181 12 C 0.557 3.443 13 O -0.539 6.539 14 N -0.696 5.696 15 C 0.124 3.876 16 C 0.174 3.826 17 N -0.700 5.700 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.931 5.931 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.145 4.145 27 C -0.130 4.130 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 12.440 11.630 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.060 3.940 3 N -0.195 5.195 4 C 0.027 3.973 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.146 4.146 8 C -0.100 4.100 9 C -0.120 4.120 10 C -0.038 4.038 11 C -0.186 4.186 12 C 0.343 3.657 13 O -0.418 6.418 14 N -0.345 5.345 15 C -0.002 4.002 16 C 0.081 3.919 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.734 3.266 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.183 4.183 27 C -0.167 4.167 28 C -0.196 4.196 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.236 0.764 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.836 13.233 11.532 17.572 hybrid contribution 1.008 -0.905 -1.146 1.775 sum 1.844 12.327 10.386 16.224 Atomic orbital electron populations 1.21099 0.87322 1.03890 1.04328 1.21590 0.97665 0.86239 0.88517 1.67900 1.08182 1.28163 1.15284 1.19004 0.89217 0.92990 0.96098 1.20789 0.94194 0.96342 1.00873 1.20956 0.93689 0.98776 0.97760 1.20911 1.00425 0.92262 1.00994 1.21107 0.92516 0.98851 0.97520 1.18779 0.94990 0.93602 1.04662 1.22072 0.93367 0.97817 0.90520 1.20905 0.94060 0.95622 1.08002 1.17886 0.87137 0.83281 0.77426 1.90701 1.13392 1.86971 1.50780 1.45714 1.11297 1.05625 1.71912 1.21803 0.94870 0.82234 1.01249 1.20808 0.91941 0.91823 0.87344 1.42105 1.05258 1.87597 0.99056 1.19114 0.91648 1.42380 0.83726 0.91031 1.24699 0.95500 1.02395 0.97711 1.69646 1.04869 1.56674 1.26671 0.86246 0.78752 0.77501 0.84055 1.21714 1.21759 1.20622 1.23191 1.00067 0.97190 0.97898 1.22640 0.98904 0.95749 0.99423 1.23435 0.96121 1.00049 0.99961 0.89875 0.91425 0.87554 0.84696 0.85286 0.85369 0.84794 0.83604 0.76447 0.91119 0.92048 0.77850 0.93453 0.90398 0.91742 0.90077 0.92695 0.90781 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.81 36.01 0.32 -1.19 16 2 C 0.21 3.24 6.82 -82.15 -0.56 2.68 16 3 N -0.49 -7.32 10.20 -6.94 -0.07 -7.39 16 4 C 0.15 2.05 6.61 -84.79 -0.56 1.49 16 5 C -0.10 -1.14 9.97 -39.48 -0.39 -1.53 16 6 C -0.09 -0.81 9.94 -39.93 -0.40 -1.21 16 7 C -0.13 -1.14 9.96 -39.93 -0.40 -1.54 16 8 C -0.08 -0.85 9.77 -39.46 -0.39 -1.23 16 9 C -0.12 -1.53 5.74 -106.81 -0.61 -2.15 16 10 C -0.01 -0.15 9.38 -38.43 -0.36 -0.51 16 11 C -0.18 -2.74 5.89 -104.83 -0.62 -3.35 16 12 C 0.56 9.29 7.69 -12.37 -0.10 9.20 16 13 O -0.54 -9.98 13.31 5.31 0.07 -9.91 16 14 N -0.70 -11.32 5.37 -61.28 -0.33 -11.64 16 15 C 0.12 2.15 4.91 -4.04 -0.02 2.13 16 16 C 0.17 3.05 0.81 -131.01 -0.11 2.94 16 17 N -0.70 -15.41 5.23 -46.48 -0.24 -15.65 16 18 C -0.24 -6.06 9.42 -15.06 -0.14 -6.20 16 19 H 0.07 1.83 6.96 -52.49 -0.37 1.47 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 22 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.15 -2.12 7.15 -25.92 -0.19 -2.30 16 27 C -0.13 -1.94 7.99 -25.92 -0.21 -2.15 16 28 C -0.15 -2.56 7.39 -25.92 -0.19 -2.75 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.11 1.63 5.83 -51.93 -0.30 1.33 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.64 6.53 -52.49 -0.34 1.30 16 37 H 0.40 6.12 6.54 -40.82 -0.27 5.85 16 38 H 0.07 1.42 7.02 -51.93 -0.36 1.05 16 39 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.39 9.11 7.83 -40.82 -0.32 8.79 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 43 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -30.22 386.04 -10.64 -40.86 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -6.58 Total: 14.68 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -5.01 Total: -7.96 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.08 Total: -60.30 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.22 -10.64 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673171955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.590 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds