Wall clock time and date at job start Tue Mar 31 2020 22:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.22482 * 2 1 4 4 C 1.33794 * 121.72162 * 180.02562 * 3 2 1 5 5 C 1.40527 * 120.83169 * 180.02562 * 4 3 2 6 6 C 1.36126 * 119.81608 * 179.97438 * 5 4 3 7 7 C 1.39348 * 121.09558 * 359.97438 * 6 5 4 8 8 C 1.36134 * 120.83638 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.61915 * 359.97438 * 8 7 6 10 10 C 1.40489 * 121.22537 * 180.30459 * 9 8 7 11 11 C 1.39050 * 117.96295 * 180.20719 * 10 9 8 12 12 C 1.47758 * 120.26671 * 179.74102 * 11 10 9 13 13 O 1.21567 * 119.99388 * 173.39720 * 12 11 10 14 14 N 1.34774 * 120.00301 * 353.40245 * 12 11 10 15 15 C 1.46502 * 119.99847 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46864 * 185.02582 * 15 14 12 17 17 N 1.46503 * 112.90794 * 293.66963 * 16 15 14 18 18 C 1.36934 * 120.00045 * 305.90185 * 17 16 15 19 19 H 1.07997 * 120.00053 * 3.44507 * 18 17 16 20 20 C 1.38811 * 120.00237 * 183.45225 * 18 17 16 21 21 N 1.31620 * 119.99990 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47361 * 89.99653 * 22 20 18 24 24 H 1.48502 * 109.47062 * 210.00159 * 22 20 18 25 25 H 1.48504 * 109.47069 * 329.99759 * 22 20 18 26 26 C 1.53779 * 113.61921 * 64.92235 * 16 15 14 27 27 C 1.53778 * 87.08380 * 139.98146 * 26 16 15 28 28 C 1.53782 * 113.61604 * 162.42319 * 16 15 14 29 29 H 1.09004 * 109.47183 * 263.04965 * 1 2 3 30 30 H 1.08997 * 109.47644 * 23.05614 * 1 2 3 31 31 H 1.09003 * 109.46837 * 143.05777 * 1 2 3 32 32 H 1.08006 * 120.09006 * 0.02562 * 5 4 3 33 33 H 1.07997 * 119.45700 * 180.02562 * 6 5 4 34 34 H 1.07998 * 119.58615 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.19441 * 180.02562 * 8 7 6 36 36 H 1.08000 * 121.02381 * 359.97438 * 10 9 8 37 37 H 0.96997 * 119.99870 * 0.02562 * 14 12 11 38 38 H 1.08995 * 109.46779 * 65.02507 * 15 14 12 39 39 H 1.08996 * 109.47409 * 305.02095 * 15 14 12 40 40 H 0.97006 * 120.00132 * 125.88947 * 17 16 15 41 41 H 0.97002 * 120.00171 * 180.02562 * 21 20 18 42 42 H 1.08998 * 113.61061 * 25.42860 * 26 16 15 43 43 H 1.09002 * 113.61644 * 254.53329 * 26 16 15 44 44 H 1.09001 * 113.61175 * 89.11530 * 27 26 16 45 45 H 1.08998 * 113.61712 * 220.02032 * 27 26 16 46 46 H 1.08995 * 113.61532 * 105.46595 * 28 16 15 47 47 H 1.09002 * 113.68768 * 334.57487 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1417 0.0000 4 6 3.4824 1.2000 -0.0005 5 6 4.1494 2.4369 0.0000 6 6 5.5102 2.4721 0.0000 7 6 6.2605 1.2978 0.0000 8 6 5.6512 0.0804 -0.0005 9 6 4.2476 0.0061 -0.0005 10 6 3.5839 -1.2321 0.0054 11 6 2.1934 -1.2266 0.0005 12 6 1.4435 -2.4997 0.0006 13 8 0.2335 -2.4924 0.1174 14 7 2.1010 -3.6691 -0.1289 15 6 1.3575 -4.9314 -0.1283 16 6 2.3413 -6.1027 -0.1622 17 7 3.0973 -6.1764 -1.4149 18 6 2.4354 -6.2091 -2.6132 19 1 1.3590 -6.1245 -2.6380 20 6 3.1478 -6.3511 -3.7960 21 7 4.4597 -6.4538 -3.7659 22 14 2.2448 -6.3964 -5.4306 23 1 2.1167 -5.0164 -5.9639 24 1 3.0069 -7.2307 -6.3942 25 1 0.8928 -6.9783 -5.2333 26 6 3.2209 -6.2051 1.0951 27 6 3.0312 -7.7286 1.0080 28 6 1.7178 -7.4434 0.2607 29 1 -0.3634 -0.1244 1.0201 30 1 -0.3634 0.9455 -0.4024 31 1 -0.3633 -0.8214 -0.6177 32 1 3.5838 3.3570 0.0013 33 1 6.0168 3.4258 0.0009 34 1 7.3390 1.3542 -0.0004 35 1 6.2428 -0.8231 -0.0001 36 1 4.1366 -2.1599 0.0096 37 1 3.0665 -3.6749 -0.2217 38 1 0.7122 -4.9733 -1.0057 39 1 0.7489 -4.9942 0.7737 40 1 4.0669 -6.2018 -1.3955 41 1 4.9576 -6.5526 -4.5925 42 1 2.7696 -5.7587 1.9811 43 1 4.2501 -5.8834 0.9353 44 1 3.7823 -8.2278 0.3959 45 1 2.8873 -8.2068 1.9769 46 1 1.5335 -8.1213 -0.5726 47 1 0.8553 -7.3370 0.9186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673171955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:01 Heat of formation + Delta-G solvation = 34.781073 kcal Electronic energy + Delta-G solvation = -29115.129187 eV Core-core repulsion = 25262.869636 eV Total energy + Delta-G solvation = -3852.259551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13672 -40.83876 -39.87080 -38.04177 -35.68228 -35.23714 -34.47543 -32.84831 -31.99033 -31.31820 -29.12157 -28.32976 -26.66115 -25.98522 -25.44639 -23.67162 -23.31270 -22.89292 -21.81825 -19.94410 -19.39087 -19.14039 -18.54386 -17.86959 -16.98124 -16.69283 -16.59758 -16.38503 -15.97133 -15.73869 -15.52051 -15.39010 -15.28253 -15.01352 -14.71697 -14.39664 -14.31445 -14.01884 -13.93086 -13.55518 -13.14833 -13.08935 -12.94787 -12.93190 -12.71099 -12.63963 -12.42022 -12.34261 -12.13928 -11.98148 -11.62554 -11.57276 -11.42200 -11.04505 -10.93036 -10.83533 -10.46295 -10.06269 -9.68764 -9.27048 -8.99498 -7.94712 -5.20790 -0.84594 -0.41690 0.82515 1.43463 1.46036 1.51884 1.52403 2.09559 2.25318 2.53808 3.02772 3.13231 3.37217 3.46673 3.49588 3.60320 3.75092 3.79652 3.81380 3.97998 4.02659 4.11409 4.21069 4.25214 4.31681 4.39244 4.57172 4.62302 4.66830 4.74998 4.83356 4.84488 4.88121 4.92440 4.92750 4.99720 5.04324 5.13206 5.21561 5.33306 5.35514 5.42927 5.44718 5.47678 5.52013 5.62170 5.71528 5.86291 6.29323 6.52166 6.80179 7.16645 7.36708 8.09528 8.33552 9.27628 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009970 B = 0.003381 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.659755 B = 8279.870808 C = 8822.487615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.194 3.806 3 N -0.501 5.501 4 C 0.124 3.876 5 C -0.123 4.123 6 C -0.074 4.074 7 C -0.119 4.119 8 C -0.091 4.091 9 C -0.134 4.134 10 C -0.004 4.004 11 C -0.204 4.204 12 C 0.557 3.443 13 O -0.563 6.563 14 N -0.694 5.694 15 C 0.133 3.867 16 C 0.160 3.840 17 N -0.704 5.704 18 C -0.221 4.221 19 H 0.066 0.934 20 C -0.062 4.062 21 N -0.960 5.960 22 Si 0.951 3.049 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.275 1.275 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.154 4.154 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.405 0.595 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.379 0.621 41 H 0.249 0.751 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 13.643 13.265 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.041 3.959 3 N -0.210 5.210 4 C 0.003 3.997 5 C -0.142 4.142 6 C -0.094 4.094 7 C -0.137 4.137 8 C -0.110 4.110 9 C -0.136 4.136 10 C -0.030 4.030 11 C -0.210 4.210 12 C 0.344 3.656 13 O -0.444 6.444 14 N -0.343 5.343 15 C 0.007 3.993 16 C 0.068 3.932 17 N -0.344 5.344 18 C -0.353 4.353 19 H 0.084 0.916 20 C -0.255 4.255 21 N -0.611 5.611 22 Si 0.782 3.218 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.201 1.201 26 C -0.166 4.166 27 C -0.160 4.160 28 C -0.194 4.194 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.241 0.759 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.212 0.788 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.534 14.435 13.201 19.724 hybrid contribution 0.555 -1.153 -1.578 2.031 sum 3.089 13.282 11.623 17.918 Atomic orbital electron populations 1.20977 0.87121 1.03545 1.04156 1.21707 0.98097 0.86572 0.89523 1.67886 1.09261 1.28014 1.15844 1.19484 0.89007 0.94550 0.96657 1.21032 0.95412 0.95692 1.02014 1.21432 0.92799 1.00555 0.94611 1.21394 1.02251 0.91475 0.98554 1.21414 0.91396 1.00641 0.97527 1.19018 0.96364 0.93052 1.05166 1.22298 0.92738 0.98911 0.89058 1.20759 0.94839 0.94668 1.10685 1.18141 0.86949 0.83807 0.76658 1.90682 1.14462 1.87376 1.51917 1.45653 1.11430 1.05245 1.71959 1.21645 0.94569 0.82648 1.00444 1.21094 0.92818 0.92306 0.86937 1.42131 1.05006 1.87502 0.99755 1.19288 0.91455 1.39491 0.85072 0.91620 1.25233 0.96124 1.04039 1.00084 1.69749 1.05724 1.59039 1.26570 0.85469 0.78019 0.76873 0.81403 1.22320 1.22210 1.20077 1.23138 0.99798 0.96889 0.96727 1.22568 0.97046 0.96170 1.00197 1.23439 0.98009 0.98279 0.99716 0.89577 0.90447 0.89419 0.83818 0.81624 0.81912 0.82863 0.81989 0.75873 0.94482 0.90440 0.78776 0.94183 0.87802 0.91315 0.92086 0.89719 0.93687 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.92 8.81 71.24 0.63 -2.29 16 2 C 0.19 6.08 6.82 43.27 0.30 6.38 16 3 N -0.50 -15.28 10.20 -175.86 -1.79 -17.08 16 4 C 0.12 3.35 6.61 40.29 0.27 3.62 16 5 C -0.12 -2.48 9.97 22.34 0.22 -2.26 16 6 C -0.07 -1.04 9.94 22.05 0.22 -0.82 16 7 C -0.12 -1.63 9.96 22.05 0.22 -1.41 16 8 C -0.09 -1.65 9.77 22.35 0.22 -1.43 16 9 C -0.13 -3.33 5.74 -21.28 -0.12 -3.45 16 10 C 0.00 -0.10 9.38 23.01 0.22 0.12 16 11 C -0.20 -6.31 5.89 -20.00 -0.12 -6.43 16 12 C 0.56 18.95 7.69 86.76 0.67 19.61 16 13 O -0.56 -21.49 13.31 -3.93 -0.05 -21.55 16 14 N -0.69 -22.47 5.37 -466.06 -2.50 -24.97 16 15 C 0.13 4.57 4.91 86.38 0.42 4.99 16 16 C 0.16 5.47 0.81 4.13 0.00 5.48 16 17 N -0.70 -31.18 5.23 -300.96 -1.57 -32.76 16 18 C -0.22 -11.43 9.42 84.03 0.79 -10.64 16 19 H 0.07 3.44 6.96 -2.91 -0.02 3.42 16 20 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 21 N -0.96 -55.23 13.06 21.65 0.28 -54.95 16 22 Si 0.95 45.69 29.55 68.60 2.03 47.72 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.13 -3.40 7.15 31.12 0.22 -3.17 16 27 C -0.12 -3.39 7.99 31.12 0.25 -3.14 16 28 C -0.15 -4.89 7.39 31.12 0.23 -4.66 16 29 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.85 5.83 -2.39 -0.01 2.84 16 32 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.16 3.50 6.53 -2.91 -0.02 3.48 16 37 H 0.41 12.18 6.54 -92.71 -0.61 11.58 16 38 H 0.04 1.52 7.02 -2.39 -0.02 1.50 16 39 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 40 H 0.38 17.95 7.83 -92.70 -0.73 17.23 16 41 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 42 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 43 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.09 2.49 8.04 -2.39 -0.02 2.47 16 Total: -1.00 -67.55 386.04 1.17 -66.38 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -0.32 Total: 39.61 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.10 Total: -2.42 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -5.59 Total: -129.75 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.55 1.17 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673171955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.159 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds