Wall clock time and date at job start Tue Mar 31 2020 22:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.45575 * 2 1 4 4 C 1.36934 * 120.00141 * 299.97099 * 3 2 1 5 5 H 1.08003 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.38816 * 120.00249 * 180.02562 * 4 3 2 7 7 N 1.31611 * 119.99997 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99911 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47049 * 120.00245 * 8 6 4 11 11 H 1.48502 * 109.46934 * 239.99797 * 8 6 4 12 12 C 1.53040 * 109.46179 * 119.96968 * 2 1 3 13 13 C 1.53192 * 109.31003 * 181.39019 * 12 2 1 14 14 N 1.46925 * 108.77452 * 305.36205 * 13 12 2 15 15 C 1.34773 * 120.62865 * 233.58843 * 14 13 12 16 16 O 1.21552 * 120.00354 * 5.86239 * 15 14 13 17 17 C 1.47896 * 119.99693 * 185.86521 * 15 14 13 18 18 C 1.40609 * 119.72510 * 222.10590 * 17 15 14 19 19 C 1.35841 * 120.94405 * 179.97438 * 18 17 15 20 20 C 1.40494 * 119.88631 * 0.02562 * 19 18 17 21 21 C 1.40483 * 121.83868 * 179.97438 * 20 19 18 22 22 N 1.31215 * 119.94158 * 180.02562 * 21 20 19 23 23 C 1.32560 * 122.80189 * 359.97438 * 22 21 20 24 24 C 1.36225 * 121.84775 * 0.02562 * 23 22 21 25 25 C 1.40763 * 118.67364 * 359.97438 * 24 23 22 26 26 C 1.38522 * 119.72786 * 42.10526 * 17 15 14 27 27 C 1.46916 * 118.73691 * 53.86689 * 14 13 12 28 28 C 1.53033 * 109.46230 * 240.04139 * 2 1 3 29 29 H 1.08997 * 109.47349 * 300.02559 * 1 2 3 30 30 H 1.08999 * 109.47502 * 60.02704 * 1 2 3 31 31 H 1.09007 * 109.47021 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99844 * 119.97280 * 3 2 1 33 33 H 0.96998 * 120.00270 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.49894 * 61.43493 * 12 2 1 35 35 H 1.09005 * 109.52097 * 301.35656 * 12 2 1 36 36 H 1.09005 * 109.57849 * 185.57690 * 13 12 2 37 37 H 1.08993 * 109.70550 * 65.22914 * 13 12 2 38 38 H 1.07999 * 119.52262 * 0.02562 * 18 17 15 39 39 H 1.08004 * 120.05785 * 180.02562 * 19 18 17 40 40 H 1.08001 * 120.02970 * 0.04101 * 21 20 19 41 41 H 1.07994 * 119.07547 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.66201 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.36746 * 0.27992 * 26 17 15 44 44 H 1.08998 * 109.59018 * 65.92346 * 27 14 13 45 45 H 1.09006 * 109.58969 * 186.34735 * 27 14 13 46 46 H 1.08998 * 109.50065 * 298.56640 * 28 2 1 47 47 H 1.09007 * 109.49747 * 58.62668 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6874 2.2243 -1.0273 5 1 1.0673 1.8707 -1.8378 6 6 2.1502 3.5330 -1.0276 7 7 2.9063 3.9639 -0.0402 8 14 1.6987 4.6831 -2.4287 9 1 0.8452 3.9611 -3.4062 10 1 0.9564 5.8512 -1.8905 11 1 2.9361 5.1509 -3.1033 12 6 2.0399 -0.7208 1.2500 13 6 3.5714 -0.6885 1.2641 14 7 4.0679 -1.2486 -0.0001 15 6 4.9621 -2.2569 -0.0002 16 8 5.2852 -2.7829 1.0470 17 6 5.5505 -2.7234 -1.2744 18 6 5.7045 -4.1014 -1.5080 19 6 6.2414 -4.5571 -2.6696 20 6 6.6516 -3.6452 -3.6565 21 6 7.2123 -4.0712 -4.8721 22 7 7.5831 -3.1869 -5.7678 23 6 7.4538 -1.8806 -5.5837 24 6 6.9224 -1.3649 -4.4402 25 6 6.5009 -2.2517 -3.4316 26 6 5.9452 -1.7992 -2.2277 27 6 3.5756 -0.6845 -1.2642 28 6 2.0398 -0.7205 -1.2501 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 2.5752 1.6989 0.7277 33 1 3.2294 4.8785 -0.0402 34 1 1.6979 -1.7557 1.2382 35 1 1.6571 -0.2213 2.1401 36 1 3.9416 -1.2845 2.0983 37 1 3.9163 0.3401 1.3686 38 1 5.3907 -4.8074 -0.7534 39 1 6.3527 -5.6187 -2.8342 40 1 7.3377 -5.1256 -5.0694 41 1 7.7789 -1.2061 -6.3619 42 1 6.8264 -0.2971 -4.3102 43 1 5.8297 -0.7413 -2.0434 44 1 3.9188 0.3453 -1.3631 45 1 3.9488 -1.2779 -2.0991 46 1 1.6978 -1.7554 -1.2385 47 1 1.6567 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673994118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:48 Heat of formation + Delta-G solvation = 38.231917 kcal Electronic energy + Delta-G solvation = -29731.583661 eV Core-core repulsion = 25879.473750 eV Total energy + Delta-G solvation = -3852.109911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17004 -40.00352 -38.05357 -37.01035 -34.65171 -33.27459 -32.46540 -31.68233 -30.65220 -29.76458 -29.07133 -27.80024 -25.22005 -24.14571 -23.83559 -23.19423 -22.57096 -22.30166 -20.22014 -18.58719 -17.95677 -17.32189 -17.21545 -17.07002 -16.11217 -15.75755 -15.12091 -15.11066 -14.71105 -14.35585 -14.17479 -13.94870 -13.89449 -13.82936 -13.63477 -13.48359 -13.01029 -12.84431 -12.62055 -12.47921 -12.35906 -11.97057 -11.58654 -11.38391 -11.31481 -11.24846 -10.97689 -10.85777 -10.76653 -10.52149 -10.29776 -10.27951 -9.87773 -9.72876 -9.64522 -9.56920 -9.21850 -9.00834 -8.33294 -8.25056 -7.03150 -5.84150 -3.12702 0.03902 0.54536 1.64651 2.46545 3.03309 3.24417 3.36198 3.42839 3.45032 3.85328 4.17087 4.30316 4.37262 4.51576 4.55668 4.61280 4.84732 4.90386 5.07138 5.18506 5.28325 5.33525 5.35456 5.44632 5.48900 5.52208 5.53552 5.67900 5.71033 5.74745 5.85209 5.98409 6.00461 6.05441 6.08431 6.12478 6.20691 6.34663 6.38333 6.38479 6.44556 6.50553 6.51801 6.68468 6.81792 6.94781 7.01505 7.61789 7.65138 7.73553 8.24748 8.34017 9.45984 10.02470 10.38094 11.38302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.003807 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.693930 B = 7352.369790 C = 9122.727607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 N -0.717 5.717 4 C -0.232 4.232 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.931 5.931 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.293 1.293 12 C -0.129 4.129 13 C 0.116 3.884 14 N -0.589 5.589 15 C 0.552 3.448 16 O -0.546 6.546 17 C -0.097 4.097 18 C -0.074 4.074 19 C -0.095 4.095 20 C -0.100 4.100 21 C 0.141 3.859 22 N -0.486 5.486 23 C 0.070 3.930 24 C -0.142 4.142 25 C -0.031 4.031 26 C -0.071 4.071 27 C 0.106 3.894 28 C -0.134 4.134 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -15.642 -5.878 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.106 3.894 3 N -0.359 5.359 4 C -0.364 4.364 5 H 0.089 0.911 6 C -0.207 4.207 7 N -0.580 5.580 8 Si 0.732 3.268 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.220 1.220 12 C -0.167 4.167 13 C -0.006 4.006 14 N -0.320 5.320 15 C 0.340 3.660 16 O -0.425 6.425 17 C -0.101 4.101 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.102 4.102 21 C -0.031 4.031 22 N -0.193 5.193 23 C -0.073 4.073 24 C -0.162 4.162 25 C -0.037 4.037 26 C -0.089 4.089 27 C -0.016 4.016 28 C -0.174 4.174 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.913 -15.921 -6.298 18.114 hybrid contribution -0.567 1.366 0.184 1.491 sum 5.346 -14.555 -6.115 16.668 Atomic orbital electron populations 1.22217 0.97543 0.99030 1.02161 1.19534 0.92177 0.86230 0.91469 1.42524 1.60699 1.05745 1.26967 1.19159 1.25411 0.91668 1.00126 0.91126 1.24685 1.00590 0.97314 0.98118 1.69652 1.39341 1.16743 1.32229 0.86228 0.77534 0.81334 0.81752 1.20636 1.21978 1.21995 1.22079 0.94761 1.00468 0.99409 1.21630 0.94318 0.99405 0.85272 1.48046 1.41532 1.33723 1.08735 1.18311 0.79573 0.79761 0.88382 1.90756 1.62081 1.56923 1.32746 1.20058 1.00999 0.94434 0.94633 1.20848 0.97178 0.94010 0.97273 1.20857 0.98350 0.99457 0.92777 1.19135 1.00867 0.93437 0.96781 1.23209 0.92437 0.99492 0.87974 1.67380 1.16245 1.03228 1.32491 1.22187 0.96995 0.91410 0.96694 1.22055 0.99035 1.00962 0.94099 1.18105 0.97939 0.92825 0.94788 1.21669 0.95593 1.00401 0.91263 1.22171 0.95511 0.99995 0.83963 1.22383 0.94419 0.99246 1.01394 0.93091 0.92545 0.94586 0.78143 0.93598 0.91865 0.90661 0.89729 0.90207 0.84738 0.84405 0.81934 0.82841 0.83915 0.83702 0.88949 0.90737 0.93272 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.44 37.16 0.31 -2.24 16 2 C 0.20 3.48 0.74 -131.78 -0.10 3.38 16 3 N -0.72 -15.70 4.13 -47.20 -0.19 -15.89 16 4 C -0.23 -5.73 8.68 -15.06 -0.13 -5.86 16 5 H 0.07 1.72 6.70 -52.48 -0.35 1.37 16 6 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 7 N -0.93 -26.22 13.06 55.49 0.72 -25.49 16 8 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C -0.13 -2.02 4.96 -26.61 -0.13 -2.15 16 13 C 0.12 1.88 6.16 -3.71 -0.02 1.86 16 14 N -0.59 -9.33 2.97 -173.60 -0.51 -9.84 16 15 C 0.55 8.84 7.28 -12.31 -0.09 8.75 16 16 O -0.55 -10.17 16.36 5.32 0.09 -10.09 16 17 C -0.10 -1.30 5.08 -104.94 -0.53 -1.83 16 18 C -0.07 -0.85 9.54 -39.55 -0.38 -1.22 16 19 C -0.09 -0.89 9.77 -39.59 -0.39 -1.28 16 20 C -0.10 -1.06 5.75 -106.78 -0.61 -1.68 16 21 C 0.14 1.36 11.04 -16.97 -0.19 1.18 16 22 N -0.49 -5.47 10.29 -13.15 -0.14 -5.60 16 23 C 0.07 0.72 11.07 -17.96 -0.20 0.52 16 24 C -0.14 -1.50 9.88 -39.35 -0.39 -1.89 16 25 C -0.03 -0.37 5.74 -106.82 -0.61 -0.98 16 26 C -0.07 -0.88 7.16 -38.78 -0.28 -1.16 16 27 C 0.11 1.64 4.70 -3.49 -0.02 1.63 16 28 C -0.13 -2.17 4.72 -26.39 -0.12 -2.30 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.03 7.27 -51.93 -0.38 0.65 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 9.14 6.47 -40.82 -0.26 8.87 16 33 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 37 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.15 1.81 6.75 -52.49 -0.35 1.45 16 44 H 0.09 1.68 7.73 -51.93 -0.40 1.28 16 45 H 0.07 1.03 4.83 -51.93 -0.25 0.78 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.30 7.31 -51.92 -0.38 0.92 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -30.34 374.18 -9.86 -40.20 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.47 Total: 10.66 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.97 Total: -5.68 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.12 Total: -56.83 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.34 -9.86 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673994118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.428 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds