Wall clock time and date at job start Tue Mar 31 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39434 * 119.54446 * 2 1 4 4 C 1.35997 * 121.08521 * 180.02562 * 3 2 1 5 5 C 1.40824 * 119.74006 * 359.91231 * 4 3 2 6 6 N 1.33267 * 120.99878 * 180.08911 * 5 4 3 7 7 C 1.31878 * 121.29958 * 179.97438 * 6 5 4 8 8 C 1.48277 * 119.23597 * 179.97438 * 7 6 5 9 9 O 1.21503 * 119.99929 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00314 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08992 * 112.90684 * 336.24748 * 11 10 8 13 13 C 1.54049 * 113.61276 * 107.61836 * 11 10 8 14 14 C 1.53781 * 87.08031 * 89.07129 * 13 11 10 15 15 H 1.08999 * 113.61181 * 270.87794 * 14 13 11 16 16 C 1.52991 * 113.61611 * 139.97702 * 14 13 11 17 17 N 1.46508 * 109.47429 * 87.50116 * 16 14 13 18 18 C 1.36933 * 119.99805 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00435 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99531 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99976 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00016 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47145 * 89.99897 * 22 20 18 24 24 H 1.48501 * 109.47005 * 209.99545 * 22 20 18 25 25 H 1.48500 * 109.47340 * 329.99647 * 22 20 18 26 26 C 1.53781 * 87.08070 * 25.42738 * 14 13 11 27 27 C 1.40278 * 121.52775 * 0.25312 * 7 6 5 28 28 C 1.36505 * 119.80780 * 359.50355 * 27 7 6 29 29 C 1.40758 * 118.24524 * 0.45965 * 28 27 7 30 30 C 1.36136 * 119.54114 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47671 * 270.02720 * 1 2 3 32 32 H 1.09008 * 109.46775 * 30.02527 * 1 2 3 33 33 H 1.08999 * 109.47375 * 150.02491 * 1 2 3 34 34 H 1.08002 * 119.45677 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.13029 * 179.97438 * 4 3 2 36 36 H 0.97002 * 120.00078 * 359.97438 * 10 8 7 37 37 H 1.09005 * 113.62125 * 334.52173 * 13 11 10 38 38 H 1.09003 * 113.61268 * 203.61961 * 13 11 10 39 39 H 1.08997 * 109.47550 * 207.50008 * 16 14 13 40 40 H 1.09002 * 109.47334 * 327.50277 * 16 14 13 41 41 H 0.96996 * 119.99136 * 0.02562 * 17 16 14 42 42 H 0.97002 * 120.00315 * 179.97438 * 21 20 18 43 43 H 1.09002 * 113.61445 * 89.11830 * 26 14 13 44 44 H 1.09002 * 113.61408 * 219.93560 * 26 14 13 45 45 H 1.07997 * 120.09540 * 179.74316 * 27 7 6 46 46 H 1.07996 * 120.87829 * 180.24241 * 28 27 7 47 47 H 1.07998 * 120.17744 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 -0.0005 5 6 4.2852 0.0461 0.0008 6 7 5.6179 0.0526 0.0021 7 6 6.3085 -1.0708 0.0039 8 6 7.7901 -1.0101 0.0047 9 8 8.4401 -2.0366 0.0067 10 7 8.4156 0.1836 0.0042 11 6 9.8795 0.2435 0.0044 12 1 10.3408 -0.6571 0.4094 13 6 10.4788 0.6949 -1.3410 14 6 10.3655 2.1366 -0.8181 15 1 9.4091 2.6086 -1.0428 16 6 11.5635 3.0161 -1.1811 17 7 11.3420 3.6252 -2.4951 18 6 12.2871 4.4582 -3.0317 19 1 13.1959 4.6659 -2.4866 20 6 12.0774 5.0347 -4.2769 21 7 12.9855 5.8358 -4.7925 22 14 10.5057 4.6748 -5.2201 23 1 9.4707 5.6763 -4.8579 24 1 10.7759 4.7476 -6.6785 25 1 10.0209 3.3146 -4.8737 26 6 10.4426 1.5450 0.5993 27 6 5.6741 -2.3219 -0.0009 28 6 4.3108 -2.3914 0.0028 29 6 3.5824 -1.1870 0.0014 30 6 2.1782 -1.1844 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1979 -0.0009 36 1 7.8967 1.0031 0.0029 37 1 9.8357 0.4889 -2.1967 38 1 11.5065 0.3653 -1.4937 39 1 11.6791 3.7998 -0.4324 40 1 12.4663 2.4061 -1.2110 41 1 10.5258 3.4382 -2.9848 42 1 12.8392 6.2385 -5.6628 43 1 11.4604 1.4479 0.9771 44 1 9.7713 2.0264 1.3104 45 1 6.2625 -3.2275 -0.0035 46 1 3.8045 -3.3453 0.0032 47 1 1.6336 -2.1170 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675767168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:59 Heat of formation + Delta-G solvation = 27.158524 kcal Electronic energy + Delta-G solvation = -27642.250331 eV Core-core repulsion = 23789.660242 eV Total energy + Delta-G solvation = -3852.590089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15785 -41.15261 -39.64194 -38.23251 -36.51736 -34.91860 -34.32054 -33.33768 -32.84638 -31.31336 -29.17413 -28.23290 -26.65751 -25.58869 -25.03103 -24.27748 -23.15393 -22.91234 -22.09939 -20.51470 -19.51035 -19.21435 -18.97793 -17.83993 -17.06108 -16.67734 -16.60510 -16.43973 -16.03273 -15.83050 -15.40212 -15.36905 -15.21951 -15.00965 -14.97681 -14.49063 -14.33874 -14.15947 -14.07565 -13.90131 -13.52129 -13.38978 -13.18690 -13.03302 -12.75986 -12.48626 -12.41922 -12.23497 -12.20459 -11.89303 -11.77782 -11.67991 -11.46784 -11.44214 -11.22565 -10.91660 -10.68218 -10.16641 -9.76944 -9.28559 -9.22475 -8.04151 -5.36662 -0.90665 -0.39528 0.85522 1.30346 1.35477 1.38512 1.45972 1.90683 2.11732 2.46498 2.88087 3.01264 3.26499 3.44906 3.50704 3.54951 3.61562 3.74348 3.81600 3.83105 3.91281 3.97962 4.08899 4.14196 4.30198 4.39394 4.50221 4.63456 4.67564 4.73680 4.82528 4.83552 4.86427 4.87324 4.90825 4.96294 4.99602 5.04157 5.09924 5.19967 5.22954 5.29029 5.30054 5.41878 5.53877 5.59221 5.75294 5.82149 6.20512 6.27811 6.61801 7.00699 7.07148 7.84816 8.03340 9.17552 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.002390 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.147272 B =11712.928646 C =13369.219848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.102 4.102 5 C 0.093 3.907 6 N -0.456 5.456 7 C 0.093 3.907 8 C 0.570 3.430 9 O -0.561 6.561 10 N -0.683 5.683 11 C 0.120 3.880 12 H 0.103 0.897 13 C -0.143 4.143 14 C -0.116 4.116 15 H 0.088 0.912 16 C 0.163 3.837 17 N -0.759 5.759 18 C -0.234 4.234 19 H 0.057 0.943 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.257 1.257 26 C -0.116 4.116 27 C -0.139 4.139 28 C -0.050 4.050 29 C -0.093 4.093 30 C -0.108 4.108 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.416 0.584 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.154 0.846 46 H 0.183 0.817 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.598 -18.350 15.385 38.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.031 4.031 6 N -0.168 5.168 7 C -0.060 4.060 8 C 0.355 3.645 9 O -0.439 6.439 10 N -0.333 5.333 11 C 0.015 3.985 12 H 0.121 0.879 13 C -0.182 4.182 14 C -0.135 4.135 15 H 0.107 0.893 16 C 0.037 3.963 17 N -0.404 5.404 18 C -0.365 4.365 19 H 0.075 0.925 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.182 1.182 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.076 4.076 29 C -0.095 4.095 30 C -0.126 4.126 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.254 0.746 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.172 0.828 46 H 0.200 0.800 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -29.525 -18.102 15.410 37.906 hybrid contribution -0.581 0.005 -1.104 1.247 sum -30.105 -18.097 14.307 37.927 Atomic orbital electron populations 1.20944 0.88376 1.04329 1.03692 1.20192 0.98265 0.92539 0.96306 1.21222 0.93348 0.99467 0.97431 1.21060 0.94562 0.96612 0.99820 1.19208 0.88566 0.94548 1.00746 1.67707 1.08618 1.29966 1.10549 1.21208 0.93346 0.90759 1.00696 1.18189 0.86520 0.83772 0.76000 1.90752 1.66759 1.34773 1.51605 1.45540 1.07021 1.08620 1.72123 1.21961 0.79287 1.00026 0.97211 0.87886 1.23518 1.01751 0.95889 0.97016 1.22746 0.98468 0.94591 0.97685 0.89340 1.20814 0.95983 0.94059 0.85424 1.42752 1.21199 1.56440 1.20016 1.19081 0.98737 1.18350 1.00309 0.92492 1.25522 1.01632 0.99861 0.98766 1.69884 1.37173 1.37124 1.19290 0.85385 0.79877 0.78845 0.77530 1.20197 1.22173 1.18155 1.23228 1.03206 0.93581 0.95418 1.21841 0.96192 0.98146 0.99795 1.21856 0.92837 0.99119 0.93772 1.19250 0.96115 0.93678 1.00503 1.21191 0.91108 0.99982 1.00359 0.89631 0.90260 0.90051 0.82627 0.84138 0.74645 0.92752 0.88776 0.95460 0.95460 0.80292 0.93336 0.87010 0.89286 0.82816 0.79951 0.82127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 9.98 71.24 0.71 0.30 16 2 C -0.07 -0.69 5.85 -20.07 -0.12 -0.81 16 3 C -0.09 -1.07 9.58 22.04 0.21 -0.86 16 4 C -0.10 -1.69 9.99 22.38 0.22 -1.47 16 5 C 0.09 1.92 6.61 40.47 0.27 2.19 16 6 N -0.46 -10.87 9.47 -177.77 -1.68 -12.55 16 7 C 0.09 2.24 6.75 42.31 0.29 2.53 16 8 C 0.57 15.55 7.81 86.92 0.68 16.23 16 9 O -0.56 -17.97 15.88 -3.72 -0.06 -18.03 16 10 N -0.68 -16.78 5.25 -442.05 -2.32 -19.11 16 11 C 0.12 2.92 4.34 45.61 0.20 3.12 16 12 H 0.10 2.58 7.46 -2.39 -0.02 2.56 16 13 C -0.14 -4.05 7.44 31.21 0.23 -3.81 16 14 C -0.12 -3.34 3.63 -10.27 -0.04 -3.38 16 15 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 16 C 0.16 6.20 6.10 86.37 0.53 6.72 16 17 N -0.76 -36.53 5.41 -343.46 -1.86 -38.39 16 18 C -0.23 -13.75 10.47 84.03 0.88 -12.87 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 21 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 22 Si 0.96 46.98 27.74 68.60 1.90 48.88 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 25 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 26 C -0.12 -2.53 7.38 31.12 0.23 -2.30 16 27 C -0.14 -2.69 9.54 22.36 0.21 -2.48 16 28 C -0.05 -0.70 9.88 22.48 0.22 -0.48 16 29 C -0.09 -1.51 5.75 -21.22 -0.12 -1.63 16 30 C -0.11 -1.13 9.37 22.31 0.21 -0.92 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 0.19 8.08 -2.38 -0.02 0.17 16 33 H 0.08 0.14 8.07 -2.39 -0.02 0.12 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.42 9.47 8.00 -92.71 -0.74 8.73 16 37 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.09 2.67 7.90 -2.39 -0.02 2.65 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.03 1.06 7.84 -2.39 -0.02 1.04 16 41 H 0.36 16.89 5.53 -92.71 -0.51 16.37 16 42 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 43 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 44 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.15 2.75 7.60 -2.91 -0.02 2.73 16 46 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -78.11 392.31 1.25 -76.86 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.31 Total: 29.99 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.28 Total: -3.48 kcal Atomic # 7 Polarization: -128.65 SS G_CDS: -5.56 Total: -134.21 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.06 Total: -18.03 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.88 kcal Total: -78.11 1.25 -76.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675767168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.014 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds