Wall clock time and date at job start Tue Mar 31 2020 23:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33325 * 126.10698 * 2 1 4 4 C 1.30853 * 109.68656 * 180.28344 * 3 2 1 5 5 N 1.34498 * 109.16263 * 359.76208 * 4 3 2 6 6 H 0.96995 * 126.47484 * 179.97438 * 5 4 3 7 7 C 1.36664 * 126.10843 * 179.89152 * 2 1 3 8 8 C 1.46765 * 126.84421 * 359.97438 * 7 2 1 9 9 O 1.21672 * 120.00254 * 256.29404 * 8 7 2 10 10 N 1.34779 * 119.99431 * 76.29597 * 8 7 2 11 11 C 1.46493 * 120.00250 * 355.19932 * 10 8 7 12 12 C 1.46505 * 119.99719 * 175.19927 * 10 8 7 13 13 C 1.53004 * 109.47134 * 89.99524 * 12 10 8 14 14 H 1.09000 * 109.46835 * 60.00382 * 13 12 10 15 15 O 1.42892 * 109.47302 * 300.00338 * 13 12 10 16 16 C 1.52993 * 109.47177 * 179.97438 * 13 12 10 17 17 N 1.46893 * 109.47318 * 185.00094 * 16 13 12 18 18 C 1.46905 * 111.00154 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47178 * 180.02562 * 18 17 16 20 20 O 1.21298 * 119.99736 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00132 * 180.02562 * 19 18 17 22 22 C 1.37103 * 120.00245 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99718 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00180 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99790 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46870 * 59.99903 * 26 24 22 28 28 H 1.48501 * 109.47132 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47148 * 300.00267 * 26 24 22 30 30 H 1.09000 * 109.47003 * 270.11177 * 1 2 3 31 31 H 1.08998 * 109.47312 * 30.10995 * 1 2 3 32 32 H 1.09003 * 109.47008 * 150.11734 * 1 2 3 33 33 H 1.07996 * 125.41868 * 179.75004 * 4 3 2 34 34 H 1.09007 * 109.47150 * 275.17949 * 11 10 8 35 35 H 1.08994 * 109.47503 * 35.18483 * 11 10 8 36 36 H 1.09001 * 109.47262 * 155.18942 * 11 10 8 37 37 H 1.09000 * 109.46948 * 329.99975 * 12 10 8 38 38 H 1.08998 * 109.47057 * 209.99986 * 12 10 8 39 39 H 0.96703 * 114.00188 * 299.99990 * 15 13 12 40 40 H 1.09006 * 109.46726 * 65.00504 * 16 13 12 41 41 H 1.09003 * 109.47224 * 305.00562 * 16 13 12 42 42 H 1.00909 * 110.99970 * 56.04924 * 17 16 13 43 43 H 1.08995 * 109.47656 * 300.00469 * 18 17 16 44 44 H 1.09001 * 109.46757 * 60.00413 * 18 17 16 45 45 H 0.97005 * 120.00228 * 359.97438 * 21 19 18 46 46 H 0.97004 * 120.00060 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7073 -0.0061 5 7 3.6122 -0.6362 -0.0050 6 1 4.4188 -1.1748 -0.0089 7 6 2.3124 -1.1041 0.0021 8 6 1.8821 -2.5073 0.0053 9 8 1.9428 -3.1599 1.0303 10 7 1.4198 -3.0728 -1.1274 11 6 1.2475 -2.2606 -2.3343 12 6 1.0895 -4.4999 -1.1516 13 6 -0.3775 -4.6907 -0.7609 14 1 -1.0138 -4.1584 -1.4679 15 8 -0.5911 -4.1745 0.5543 16 6 -0.7225 -6.1809 -0.7868 17 7 -2.1581 -6.3557 -0.5291 18 6 -2.5269 -7.7776 -0.5470 19 6 -4.0035 -7.9170 -0.2802 20 8 -4.6820 -6.9289 -0.0939 21 7 -4.5702 -9.1393 -0.2485 22 6 -5.9137 -9.2661 -0.0063 23 1 -6.5178 -8.3864 0.1596 24 6 -6.4980 -10.5263 0.0258 25 7 -5.7628 -11.5968 -0.1755 26 14 -8.3284 -10.6991 0.3566 27 1 -9.0913 -9.9765 -0.6927 28 1 -8.7011 -12.1365 0.3391 29 1 -8.6477 -10.1216 1.6869 30 1 -0.3633 0.0020 1.0277 31 1 -0.3634 0.8890 -0.5155 32 1 -0.3633 -0.8911 -0.5120 33 1 4.3969 1.3746 -0.0114 34 1 0.2759 -1.7672 -2.3046 35 1 2.0354 -1.5089 -2.3820 36 1 1.3028 -2.9012 -3.2144 37 1 1.7259 -5.0322 -0.4446 38 1 1.2525 -4.8936 -2.1548 39 1 -0.0561 -4.6027 1.2366 40 1 -0.1497 -6.6999 -0.0182 41 1 -0.4759 -6.5941 -1.7649 42 1 -2.7107 -5.8308 -1.1904 43 1 -2.2930 -8.2015 -1.5236 44 1 -1.9666 -8.3080 0.2229 45 1 -4.0277 -9.9295 -0.3979 46 1 -6.1706 -12.4766 -0.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677143399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:14 Heat of formation + Delta-G solvation = -53.662560 kcal Electronic energy + Delta-G solvation = -28970.433487 eV Core-core repulsion = 24703.489469 eV Total energy + Delta-G solvation = -4266.944018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59923 -40.04101 -38.36352 -37.54020 -35.69462 -34.69369 -33.74781 -33.63952 -31.80474 -31.21116 -30.38514 -27.95630 -27.73295 -26.49317 -25.04750 -23.65140 -22.64759 -21.79105 -21.29235 -19.72752 -19.22155 -18.52238 -17.87672 -17.32976 -16.88264 -16.38743 -15.99930 -15.88792 -15.40480 -15.23386 -14.91669 -14.79809 -14.40865 -14.29759 -14.00978 -13.71169 -13.46786 -13.37876 -13.24464 -13.12186 -13.00028 -12.73702 -12.44899 -12.36122 -12.05446 -11.79846 -11.51746 -11.47764 -11.18571 -10.99545 -10.85203 -10.42391 -10.39475 -10.28818 -10.19624 -10.12590 -9.47724 -8.96871 -8.80523 -8.41737 -8.01999 -7.93319 -6.39628 -3.80335 1.27292 1.91039 2.37897 2.64204 2.96851 3.22151 3.27409 3.32254 3.93068 3.99627 4.05052 4.18775 4.26186 4.46252 4.64511 4.67766 4.76717 4.80906 4.87208 4.98427 5.03721 5.10159 5.22193 5.25560 5.28212 5.34352 5.48848 5.50246 5.53496 5.60786 5.73447 5.78965 5.94452 5.98077 5.98949 6.23466 6.28090 6.79791 6.85405 7.20106 7.53822 7.57215 7.63996 7.69812 7.86917 8.08523 8.63783 9.20177 9.56539 10.08452 10.78092 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.001739 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.332150 B =16093.429873 C =16500.384975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 N -0.492 5.492 4 C 0.205 3.795 5 N -0.546 5.546 6 H 0.424 0.576 7 C -0.075 4.075 8 C 0.602 3.398 9 O -0.517 6.517 10 N -0.597 5.597 11 C 0.078 3.922 12 C 0.084 3.916 13 C 0.097 3.903 14 H 0.097 0.903 15 O -0.536 6.536 16 C 0.029 3.971 17 N -0.657 5.657 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.376 0.624 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.349 0.651 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.085 18.273 -6.785 30.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 N -0.212 5.212 4 C -0.079 4.079 5 N -0.150 5.150 6 H 0.262 0.738 7 C -0.192 4.192 8 C 0.387 3.613 9 O -0.391 6.391 10 N -0.330 5.330 11 C -0.065 4.065 12 C -0.040 4.040 13 C 0.036 3.964 14 H 0.115 0.885 15 O -0.341 6.341 16 C -0.101 4.101 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.464 6.464 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.169 0.831 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.936 19.584 -5.740 30.701 hybrid contribution 0.754 -2.323 -0.729 2.549 sum 23.690 17.260 -6.469 30.017 Atomic orbital electron populations 1.20227 0.86688 1.03189 1.03448 1.20991 0.96661 0.86667 1.02545 1.70052 1.00447 1.30391 1.20297 1.25073 0.97392 0.81779 1.03618 1.43164 1.07492 1.08609 1.55784 0.73776 1.20592 0.85167 0.95009 1.18421 1.16798 0.77448 0.83835 0.83199 1.90821 1.54440 1.62794 1.31028 1.47547 1.64767 1.09743 1.10974 1.21864 1.02415 0.95761 0.86424 1.22351 0.97773 0.80431 1.03431 1.22227 0.93831 0.93421 0.86963 0.88531 1.86604 1.68268 1.63520 1.15714 1.22626 0.91324 0.96320 0.99870 1.59944 1.02366 1.08891 1.57799 1.21686 0.96428 0.89705 1.00362 1.19802 0.88503 0.84357 0.84730 1.90537 1.63836 1.37453 1.54620 1.41854 1.09508 1.06289 1.62478 1.19666 0.83915 0.94001 1.45308 0.87965 1.25257 1.00447 0.94833 0.97418 1.69606 1.36577 0.98337 1.49920 0.85911 0.82106 0.76946 0.79211 1.19933 1.21002 1.19871 0.90435 0.90469 0.90751 0.76908 0.91746 0.91364 0.90521 0.89307 0.89259 0.77587 0.90642 0.94869 0.83125 0.94051 0.89675 0.77498 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.24 36.00 0.37 -0.38 16 2 C 0.06 0.66 6.96 -82.51 -0.57 0.09 16 3 N -0.49 -4.95 11.20 -10.65 -0.12 -5.07 16 4 C 0.20 1.30 13.01 -90.57 -1.18 0.13 16 5 N -0.55 -3.46 6.19 -10.79 -0.07 -3.52 16 6 H 0.42 1.43 8.96 -40.82 -0.37 1.07 16 7 C -0.07 -0.71 5.15 -82.14 -0.42 -1.13 16 8 C 0.60 6.39 6.73 -12.81 -0.09 6.30 16 9 O -0.52 -7.13 15.21 -8.35 -0.13 -7.26 16 10 N -0.60 -4.88 2.83 -183.10 -0.52 -5.39 16 11 C 0.08 0.45 9.96 59.84 0.60 1.04 16 12 C 0.08 0.65 5.18 -4.04 -0.02 0.63 16 13 C 0.10 1.01 3.41 -26.73 -0.09 0.92 16 14 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 15 O -0.54 -7.37 11.99 -48.79 -0.59 -7.96 16 16 C 0.03 0.33 5.32 -3.83 -0.02 0.31 16 17 N -0.66 -10.71 6.08 -115.06 -0.70 -11.41 16 18 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 19 C 0.44 10.60 7.82 -10.99 -0.09 10.52 16 20 O -0.58 -16.19 15.78 5.54 0.09 -16.10 16 21 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 22 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 23 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 26 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.70 6.67 -51.93 -0.35 0.35 16 33 H 0.21 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.06 0.39 7.06 -51.93 -0.37 0.02 16 35 H 0.07 0.38 7.00 -51.93 -0.36 0.02 16 36 H 0.08 0.29 7.83 -51.93 -0.41 -0.12 16 37 H 0.09 0.74 7.49 -51.93 -0.39 0.35 16 38 H 0.09 0.47 7.86 -51.93 -0.41 0.06 16 39 H 0.38 4.86 8.31 45.56 0.38 5.24 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.35 5.90 8.43 -39.29 -0.33 5.57 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -37.56 391.64 -8.08 -45.65 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -5.81 Total: 16.28 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -1.79 Total: 11.18 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.74 Total: -63.97 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.62 Total: -31.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.56 -8.08 -45.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677143399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.014 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds