Wall clock time and date at job start Tue Mar 31 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33325 * 126.10698 * 2 1 4 4 C 1.30853 * 109.68656 * 180.28344 * 3 2 1 5 5 N 1.34498 * 109.16263 * 359.76208 * 4 3 2 6 6 H 0.96995 * 126.47484 * 179.97438 * 5 4 3 7 7 C 1.36664 * 126.10843 * 179.89152 * 2 1 3 8 8 C 1.46765 * 126.84421 * 359.97438 * 7 2 1 9 9 O 1.21672 * 120.00254 * 256.29404 * 8 7 2 10 10 N 1.34779 * 119.99431 * 76.29597 * 8 7 2 11 11 C 1.46493 * 120.00250 * 355.19932 * 10 8 7 12 12 C 1.46505 * 119.99719 * 175.19927 * 10 8 7 13 13 C 1.53004 * 109.47134 * 89.99524 * 12 10 8 14 14 H 1.09000 * 109.46835 * 60.00382 * 13 12 10 15 15 O 1.42892 * 109.47302 * 300.00338 * 13 12 10 16 16 C 1.52993 * 109.47177 * 179.97438 * 13 12 10 17 17 N 1.46893 * 109.47318 * 185.00094 * 16 13 12 18 18 C 1.46905 * 111.00154 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47178 * 180.02562 * 18 17 16 20 20 O 1.21298 * 119.99736 * 0.02562 * 19 18 17 21 21 N 1.34771 * 120.00132 * 180.02562 * 19 18 17 22 22 C 1.37103 * 120.00245 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99718 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00180 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99790 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46870 * 59.99903 * 26 24 22 28 28 H 1.48501 * 109.47132 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47148 * 300.00267 * 26 24 22 30 30 H 1.09000 * 109.47003 * 270.11177 * 1 2 3 31 31 H 1.08998 * 109.47312 * 30.10995 * 1 2 3 32 32 H 1.09003 * 109.47008 * 150.11734 * 1 2 3 33 33 H 1.07996 * 125.41868 * 179.75004 * 4 3 2 34 34 H 1.09007 * 109.47150 * 275.17949 * 11 10 8 35 35 H 1.08994 * 109.47503 * 35.18483 * 11 10 8 36 36 H 1.09001 * 109.47262 * 155.18942 * 11 10 8 37 37 H 1.09000 * 109.46948 * 329.99975 * 12 10 8 38 38 H 1.08998 * 109.47057 * 209.99986 * 12 10 8 39 39 H 0.96703 * 114.00188 * 299.99990 * 15 13 12 40 40 H 1.09006 * 109.46726 * 65.00504 * 16 13 12 41 41 H 1.09003 * 109.47224 * 305.00562 * 16 13 12 42 42 H 1.00909 * 110.99970 * 56.04924 * 17 16 13 43 43 H 1.08995 * 109.47656 * 300.00469 * 18 17 16 44 44 H 1.09001 * 109.46757 * 60.00413 * 18 17 16 45 45 H 0.97005 * 120.00228 * 359.97438 * 21 19 18 46 46 H 0.97004 * 120.00060 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7073 -0.0061 5 7 3.6122 -0.6362 -0.0050 6 1 4.4188 -1.1748 -0.0089 7 6 2.3124 -1.1041 0.0021 8 6 1.8821 -2.5073 0.0053 9 8 1.9428 -3.1599 1.0303 10 7 1.4198 -3.0728 -1.1274 11 6 1.2475 -2.2606 -2.3343 12 6 1.0895 -4.4999 -1.1516 13 6 -0.3775 -4.6907 -0.7609 14 1 -1.0138 -4.1584 -1.4679 15 8 -0.5911 -4.1745 0.5543 16 6 -0.7225 -6.1809 -0.7868 17 7 -2.1581 -6.3557 -0.5291 18 6 -2.5269 -7.7776 -0.5470 19 6 -4.0035 -7.9170 -0.2802 20 8 -4.6820 -6.9289 -0.0939 21 7 -4.5702 -9.1393 -0.2485 22 6 -5.9137 -9.2661 -0.0063 23 1 -6.5178 -8.3864 0.1596 24 6 -6.4980 -10.5263 0.0258 25 7 -5.7628 -11.5968 -0.1755 26 14 -8.3284 -10.6991 0.3566 27 1 -9.0913 -9.9765 -0.6927 28 1 -8.7011 -12.1365 0.3391 29 1 -8.6477 -10.1216 1.6869 30 1 -0.3633 0.0020 1.0277 31 1 -0.3634 0.8890 -0.5155 32 1 -0.3633 -0.8911 -0.5120 33 1 4.3969 1.3746 -0.0114 34 1 0.2759 -1.7672 -2.3046 35 1 2.0354 -1.5089 -2.3820 36 1 1.3028 -2.9012 -3.2144 37 1 1.7259 -5.0322 -0.4446 38 1 1.2525 -4.8936 -2.1548 39 1 -0.0561 -4.6027 1.2366 40 1 -0.1497 -6.6999 -0.0182 41 1 -0.4759 -6.5941 -1.7649 42 1 -2.7107 -5.8308 -1.1904 43 1 -2.2930 -8.2015 -1.5236 44 1 -1.9666 -8.3080 0.2229 45 1 -4.0277 -9.9295 -0.3979 46 1 -6.1706 -12.4766 -0.1527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677143399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:13 Heat of formation + Delta-G solvation = -85.311062 kcal Electronic energy + Delta-G solvation = -28971.805869 eV Core-core repulsion = 24703.489469 eV Total energy + Delta-G solvation = -4268.316400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.20784 -40.79782 -40.14731 -38.60063 -36.55276 -36.12035 -35.54417 -34.26081 -33.27141 -32.51447 -31.30132 -29.03504 -28.41148 -27.48718 -26.45531 -24.93370 -23.42212 -22.61762 -21.97666 -21.07419 -20.36391 -19.91200 -19.13822 -18.29043 -17.79881 -17.43674 -17.10054 -16.92521 -16.59182 -16.16799 -16.11687 -15.90469 -15.83675 -15.44474 -15.02766 -14.94629 -14.65626 -14.31218 -14.15728 -13.96945 -13.88945 -13.69750 -13.47122 -13.31085 -13.19144 -13.06439 -12.98446 -12.78616 -12.55964 -12.43690 -12.12453 -12.03928 -11.60832 -11.50781 -11.16171 -11.01850 -10.90951 -10.34838 -10.01902 -9.67136 -9.46251 -9.24918 -8.46875 -5.95722 0.64621 1.23664 1.39675 1.41530 1.52508 1.71693 2.00489 2.05332 2.29206 2.42988 2.90947 3.20256 3.42476 3.48864 3.63028 3.71373 3.85741 4.06750 4.14102 4.16553 4.25840 4.29643 4.34619 4.43073 4.49796 4.54649 4.57499 4.66323 4.70617 4.72430 4.79324 4.89188 4.93900 5.02480 5.10998 5.37065 5.40435 5.54634 5.88761 6.11173 6.16674 6.38534 6.39985 6.60247 6.88369 6.93347 7.00110 7.12438 7.55990 8.12013 8.70193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030818 B = 0.001739 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.332150 B =16093.429873 C =16500.384975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.225 3.775 5 N -0.536 5.536 6 H 0.438 0.562 7 C -0.089 4.089 8 C 0.599 3.401 9 O -0.558 6.558 10 N -0.591 5.591 11 C 0.075 3.925 12 C 0.089 3.911 13 C 0.098 3.902 14 H 0.095 0.905 15 O -0.562 6.562 16 C 0.033 3.967 17 N -0.680 5.680 18 C 0.067 3.933 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.376 0.624 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.343 0.657 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.947 18.075 -8.225 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.059 4.059 5 N -0.141 5.141 6 H 0.279 0.721 7 C -0.206 4.206 8 C 0.385 3.615 9 O -0.436 6.436 10 N -0.322 5.322 11 C -0.067 4.067 12 C -0.034 4.034 13 C 0.037 3.963 14 H 0.112 0.888 15 O -0.368 6.368 16 C -0.096 4.096 17 N -0.313 5.313 18 C -0.065 4.065 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.193 1.193 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.275 0.725 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.144 0.856 39 H 0.224 0.776 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.161 0.839 43 H 0.089 0.911 44 H 0.119 0.881 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.847 19.360 -7.225 32.316 hybrid contribution 0.245 -2.188 -0.310 2.224 sum 25.091 17.171 -7.535 31.324 Atomic orbital electron populations 1.20161 0.87111 1.03359 1.02576 1.21073 0.96878 0.87309 1.03386 1.70036 1.02022 1.30810 1.22255 1.25949 0.97496 0.82078 1.00400 1.43150 1.07045 1.08854 1.55050 0.72055 1.20472 0.86443 0.94307 1.19415 1.17027 0.77187 0.84067 0.83201 1.90795 1.56412 1.63831 1.32521 1.47623 1.63394 1.10129 1.11034 1.22029 1.02246 0.96171 0.86214 1.22341 0.95470 0.80324 1.05257 1.22329 0.95678 0.92750 0.85528 0.88756 1.86577 1.68769 1.64252 1.17191 1.22690 0.88206 0.97101 1.01628 1.59927 1.05086 1.07768 1.58500 1.21530 0.91428 0.91280 1.02308 1.20960 0.91083 0.83068 0.82610 1.90503 1.65787 1.38732 1.56109 1.41921 1.08918 1.07168 1.62995 1.19634 0.85328 0.93866 1.47781 0.90477 1.26033 1.04602 0.94092 0.96468 1.69662 1.38128 0.98703 1.49505 0.84992 0.76931 0.77588 0.78830 1.19618 1.19320 1.19940 0.91821 0.89767 0.91067 0.72494 0.92244 0.91097 0.87779 0.89751 0.85635 0.77590 0.90125 0.91782 0.83858 0.91136 0.88076 0.76917 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.24 71.24 0.73 -0.76 16 2 C 0.05 0.95 6.96 41.96 0.29 1.24 16 3 N -0.53 -10.22 11.20 -187.59 -2.10 -12.32 16 4 C 0.22 2.36 13.01 180.33 2.35 4.71 16 5 N -0.54 -5.88 6.19 -188.04 -1.16 -7.05 16 6 H 0.44 2.07 8.96 -92.71 -0.83 1.24 16 7 C -0.09 -1.64 5.15 40.01 0.21 -1.43 16 8 C 0.60 12.55 6.73 86.47 0.58 13.13 16 9 O -0.56 -15.68 15.21 8.71 0.13 -15.54 16 10 N -0.59 -8.85 2.83 -851.42 -2.41 -11.26 16 11 C 0.08 0.72 9.96 127.77 1.27 1.99 16 12 C 0.09 1.19 5.18 86.38 0.45 1.64 16 13 C 0.10 1.92 3.41 30.59 0.10 2.02 16 14 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 15 O -0.56 -15.71 11.99 -136.01 -1.63 -17.34 16 16 C 0.03 0.68 5.32 86.30 0.46 1.14 16 17 N -0.68 -21.50 6.08 -517.95 -3.15 -24.65 16 18 C 0.07 2.28 6.17 85.56 0.53 2.81 16 19 C 0.44 21.16 7.82 87.66 0.69 21.84 16 20 O -0.62 -35.83 15.78 -3.09 -0.05 -35.88 16 21 N -0.57 -29.82 5.29 -306.99 -1.62 -31.45 16 22 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 26 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.41 6.67 -2.39 -0.02 1.40 16 33 H 0.26 -0.03 8.06 -2.91 -0.02 -0.05 16 34 H 0.06 0.66 7.06 -2.38 -0.02 0.64 16 35 H 0.07 0.67 7.00 -2.39 -0.02 0.65 16 36 H 0.10 0.43 7.83 -2.39 -0.02 0.42 16 37 H 0.08 1.27 7.49 -2.39 -0.02 1.25 16 38 H 0.13 0.80 7.86 -2.39 -0.02 0.78 16 39 H 0.38 10.06 8.31 -74.06 -0.62 9.45 16 40 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.34 11.47 8.43 -89.69 -0.76 10.71 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 45 H 0.40 19.45 7.90 -92.70 -0.73 18.72 16 46 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -84.29 391.64 -2.62 -86.91 By element: Atomic # 1 Polarization: 45.01 SS G_CDS: -1.87 Total: 43.14 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: 8.93 Total: 29.50 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -10.16 Total: -136.28 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: -1.55 Total: -68.76 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -84.29 -2.62 -86.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677143399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.596 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds