Wall clock time and date at job start Tue Mar 31 2020 22:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30834 * 125.90254 * 2 1 4 4 N 1.40079 * 108.20692 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03628 * 179.73427 * 4 3 2 6 6 C 1.34945 * 107.92824 * 359.97438 * 4 3 2 7 7 C 1.50693 * 126.12988 * 180.02562 * 6 4 3 8 8 C 1.35323 * 107.74170 * 0.02562 * 6 4 3 9 9 C 1.50697 * 126.03572 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.47654 * 15.99470 * 9 8 6 11 11 O 1.42897 * 109.47256 * 135.99969 * 9 8 6 12 12 C 1.53007 * 109.46942 * 255.99485 * 9 8 6 13 13 N 1.46497 * 109.46895 * 180.02562 * 12 9 8 14 14 C 1.34784 * 119.99754 * 179.97438 * 13 12 9 15 15 O 1.21587 * 119.99746 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00162 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00137 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46881 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00297 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99738 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00210 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00013 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00128 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00388 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99797 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47188 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47000 * 119.99588 * 25 23 21 28 28 H 1.48493 * 109.46873 * 239.99701 * 25 23 21 29 29 H 1.09005 * 109.47130 * 96.60985 * 1 2 3 30 30 H 1.09000 * 109.47313 * 216.61644 * 1 2 3 31 31 H 1.09006 * 109.46877 * 336.61318 * 1 2 3 32 32 H 1.08999 * 109.46815 * 90.02415 * 5 4 3 33 33 H 1.09005 * 109.47026 * 210.02193 * 5 4 3 34 34 H 1.09001 * 109.47147 * 330.02354 * 5 4 3 35 35 H 1.08994 * 109.47273 * 90.02402 * 7 6 4 36 36 H 1.08999 * 109.47128 * 210.02391 * 7 6 4 37 37 H 1.09000 * 109.47308 * 330.02317 * 7 6 4 38 38 H 0.96704 * 114.00472 * 74.31035 * 11 9 8 39 39 H 1.08998 * 109.46934 * 300.00426 * 12 9 8 40 40 H 1.09001 * 109.47207 * 60.00036 * 12 9 8 41 41 H 0.96995 * 120.00416 * 0.02562 * 13 12 9 42 42 H 0.97011 * 119.99884 * 359.97438 * 16 14 13 43 43 H 1.08999 * 109.46994 * 299.99362 * 17 16 14 44 44 H 1.08997 * 109.47141 * 59.99996 * 17 16 14 45 45 H 0.97000 * 120.00363 * 359.97438 * 20 18 17 46 46 H 0.96997 * 120.00580 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 6 4.7899 1.5006 -0.0063 6 6 3.6142 -0.7154 -0.0004 7 6 4.8349 -1.5990 -0.0003 8 6 2.3270 -1.1330 -0.0002 9 6 1.8598 -2.5658 0.0006 10 1 2.6862 -3.2174 0.2842 11 8 0.7907 -2.7176 0.9364 12 6 1.3699 -2.9432 -1.3990 13 7 0.9151 -4.3358 -1.3980 14 6 0.4371 -4.8894 -2.5302 15 8 0.3830 -4.2327 -3.5521 16 7 0.0183 -6.1703 -2.5293 17 6 -0.5007 -6.7722 -3.7600 18 6 -0.8974 -8.2011 -3.4918 19 8 -0.7596 -8.6707 -2.3820 20 7 -1.4042 -8.9575 -4.4855 21 6 -1.7656 -10.2573 -4.2415 22 1 -1.6437 -10.6753 -3.2531 23 6 -2.2876 -11.0373 -5.2661 24 7 -2.4355 -10.5291 -6.4688 25 14 -2.7793 -12.8086 -4.9337 26 1 -2.5144 -13.1371 -3.5099 27 1 -4.2257 -12.9832 -5.2216 28 1 -1.9883 -13.7138 -5.8055 29 1 -0.3634 -0.1183 -1.0209 30 1 -0.3634 -0.8248 0.6129 31 1 -0.3633 0.9433 0.4079 32 1 5.0849 1.7195 1.0200 33 1 5.6083 0.9960 -0.5198 34 1 4.5553 2.4312 -0.5232 35 1 5.1290 -1.8122 1.0273 36 1 4.6075 -2.5329 -0.5143 37 1 5.6512 -1.0910 -0.5139 38 1 -0.0499 -2.3447 0.6373 39 1 0.5434 -2.2916 -1.6826 40 1 2.1854 -2.8273 -2.1129 41 1 0.9573 -4.8592 -0.5825 42 1 0.0611 -6.6941 -1.7138 43 1 -1.3711 -6.2109 -4.0999 44 1 0.2707 -6.7479 -4.5296 45 1 -1.5141 -8.5821 -5.3731 46 1 -2.7996 -11.0737 -7.1842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686402641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:12 Heat of formation + Delta-G solvation = -72.674998 kcal Electronic energy + Delta-G solvation = -28655.513852 eV Core-core repulsion = 24387.745394 eV Total energy + Delta-G solvation = -4267.768459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.48838 -41.17032 -40.02516 -38.58003 -36.22139 -35.33560 -35.22338 -34.90803 -33.41025 -33.31897 -30.50211 -30.41667 -28.96987 -27.50146 -26.55024 -25.91795 -23.59530 -22.01239 -21.32953 -20.93958 -20.53147 -20.07920 -19.57681 -18.15401 -17.44929 -17.36722 -17.02718 -16.69588 -16.66896 -16.48912 -16.27840 -15.86610 -15.54291 -15.30295 -15.05314 -14.88314 -14.71842 -14.33896 -14.00614 -13.93206 -13.90403 -13.76055 -13.54930 -13.52574 -13.39522 -13.17183 -12.89134 -12.83376 -12.73687 -12.41931 -12.24129 -12.09449 -11.63877 -11.55461 -11.47212 -11.06345 -10.52268 -10.41170 -10.07562 -10.04982 -9.79447 -9.33995 -8.48731 -5.98719 0.83264 1.37189 1.43537 1.47275 1.58993 1.60214 1.76271 1.92773 2.15347 2.30855 3.07442 3.18693 3.34689 3.38550 3.64616 3.67620 3.81078 4.09375 4.09587 4.24422 4.26443 4.29697 4.36735 4.44410 4.47314 4.50311 4.60615 4.68170 4.70076 4.72962 4.79178 4.93539 5.06649 5.15910 5.23171 5.34861 5.41426 5.45985 5.67707 5.94107 5.99026 6.10137 6.50947 6.68396 6.72807 7.06302 7.07038 7.45905 7.56979 7.97614 8.68404 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.001692 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.260389 B =16543.220626 C =16623.397957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 N -0.339 5.339 4 N -0.379 5.379 5 C 0.091 3.909 6 C 0.103 3.897 7 C -0.097 4.097 8 C -0.290 4.290 9 C 0.195 3.805 10 H 0.121 0.879 11 O -0.561 6.561 12 C 0.117 3.883 13 N -0.727 5.727 14 C 0.705 3.295 15 O -0.633 6.633 16 N -0.723 5.723 17 C 0.142 3.858 18 C 0.435 3.565 19 O -0.623 6.623 20 N -0.560 5.560 21 C -0.336 4.336 22 H 0.087 0.913 23 C -0.011 4.011 24 N -0.917 5.917 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.382 0.618 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.411 0.589 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.399 0.601 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.332 21.989 13.168 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 N -0.162 5.162 4 N -0.161 5.161 5 C -0.049 4.049 6 C -0.026 4.026 7 C -0.155 4.155 8 C -0.302 4.302 9 C 0.134 3.866 10 H 0.138 0.862 11 O -0.370 6.370 12 C -0.008 4.008 13 N -0.384 5.384 14 C 0.405 3.595 15 O -0.515 6.515 16 N -0.381 5.381 17 C 0.013 3.987 18 C 0.222 3.778 19 O -0.511 6.511 20 N -0.196 5.196 21 C -0.465 4.465 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.557 5.557 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.248 0.752 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.233 0.767 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.931 23.302 13.132 30.633 hybrid contribution -0.794 -1.342 -0.323 1.593 sum 14.137 21.960 12.809 29.089 Atomic orbital electron populations 1.20478 0.85644 1.04365 1.03759 1.22525 0.97838 0.90243 0.98079 1.77264 0.87580 1.23571 1.27772 1.48676 1.05732 1.04854 1.56799 1.22184 0.83214 0.94892 1.04614 1.21421 0.97686 0.84911 0.98603 1.20692 0.91894 0.98086 1.04866 1.20250 0.92354 0.96528 1.21102 1.20066 0.90078 0.90402 0.86025 0.86152 1.86631 1.21836 1.82770 1.45790 1.21922 0.99884 0.80616 0.98348 1.44817 1.68289 1.14236 1.11022 1.15925 0.78261 0.81191 0.84154 1.90889 1.64041 1.63078 1.33499 1.44674 1.67889 1.11603 1.13917 1.20575 1.00514 0.90085 0.87497 1.20432 0.83472 0.88648 0.85294 1.90471 1.61288 1.74926 1.24415 1.41842 1.54734 1.11531 1.11484 1.19780 1.40769 0.88072 0.97897 0.89532 1.26122 0.96407 1.04328 0.94323 1.69684 1.44839 1.39233 1.01916 0.84808 0.78097 0.76591 0.78450 1.19415 1.19719 1.19708 0.89695 0.88733 0.90395 0.89493 0.86798 0.89272 0.88445 0.88800 0.88927 0.76610 0.91801 0.91405 0.75094 0.75160 0.89079 0.89079 0.76711 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 9.97 71.24 0.71 -0.54 16 2 C 0.08 1.60 7.16 43.10 0.31 1.91 16 3 N -0.34 -7.75 12.57 -47.39 -0.60 -8.34 16 4 N -0.38 -6.48 4.01 -356.02 -1.43 -7.91 16 5 C 0.09 0.72 11.28 127.77 1.44 2.16 16 6 C 0.10 1.59 6.93 41.41 0.29 1.88 16 7 C -0.10 -0.71 9.67 71.23 0.69 -0.02 16 8 C -0.29 -5.21 5.08 -20.14 -0.10 -5.32 16 9 C 0.19 3.04 3.24 29.85 0.10 3.14 16 10 H 0.12 1.56 7.18 -2.39 -0.02 1.54 16 11 O -0.56 -9.23 12.72 -148.98 -1.89 -11.13 16 12 C 0.12 2.26 5.18 86.38 0.45 2.71 16 13 N -0.73 -15.94 5.45 -478.52 -2.61 -18.55 16 14 C 0.71 21.84 8.57 179.05 1.53 23.38 16 15 O -0.63 -24.17 16.34 -3.99 -0.07 -24.23 16 16 N -0.72 -23.43 5.53 -482.31 -2.67 -26.10 16 17 C 0.14 5.18 6.15 85.63 0.53 5.71 16 18 C 0.43 19.90 7.85 87.66 0.69 20.59 16 19 O -0.62 -31.85 15.24 -3.07 -0.05 -31.90 16 20 N -0.56 -28.01 5.29 -306.98 -1.62 -29.63 16 21 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -48.60 13.05 21.66 0.28 -48.32 16 25 Si 1.00 41.64 29.55 68.60 2.03 43.67 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.07 5.05 -2.39 -0.01 1.05 16 31 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.11 0.26 7.04 -2.38 -0.02 0.24 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.62 7.45 -2.39 -0.02 0.60 16 37 H 0.09 0.32 7.07 -2.39 -0.02 0.31 16 38 H 0.38 4.89 5.88 -74.05 -0.44 4.45 16 39 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 7.40 8.36 -92.71 -0.78 6.62 16 42 H 0.41 12.94 7.45 -92.70 -0.69 12.24 16 43 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -76.79 389.47 -2.27 -79.07 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: -1.56 Total: 45.52 kcal Atomic # 6 Polarization: 29.95 SS G_CDS: 7.91 Total: 37.86 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -8.64 Total: -138.85 kcal Atomic # 8 Polarization: -65.26 SS G_CDS: -2.01 Total: -67.26 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -76.79 -2.27 -79.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686402641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.393 kcal (2) G-P(sol) polarization free energy of solvation -76.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds