Wall clock time and date at job start Tue Mar 31 2020 23:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35836 * 126.46045 * 2 1 4 4 H 0.96996 * 124.92000 * 359.97438 * 3 2 1 5 5 N 1.28459 * 110.16975 * 180.02562 * 3 2 1 6 6 C 1.31933 * 110.20795 * 0.02562 * 5 3 2 7 7 C 1.47528 * 126.45986 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00046 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99944 * 359.74786 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27864 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47205 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47064 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00445 * 66.04108 * 13 12 11 15 15 C 1.46897 * 110.99826 * 189.99853 * 13 12 11 16 16 C 1.50707 * 109.47383 * 169.99744 * 15 13 12 17 17 O 1.21291 * 119.99622 * 0.02562 * 16 15 13 18 18 N 1.34768 * 120.00180 * 180.02562 * 16 15 13 19 19 C 1.37101 * 119.99784 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99951 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99725 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46716 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46985 * 120.00128 * 23 21 19 26 26 H 1.48498 * 109.46801 * 240.00244 * 23 21 19 27 27 C 1.35785 * 126.46210 * 180.35325 * 2 1 3 28 28 O 1.36091 * 127.26438 * 359.97438 * 27 2 1 29 29 H 1.09007 * 109.47300 * 89.97130 * 1 2 3 30 30 H 1.08994 * 109.47373 * 209.97005 * 1 2 3 31 31 H 1.08999 * 109.47452 * 329.97451 * 1 2 3 32 32 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 33 33 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 34 34 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 35 35 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 36 36 H 1.08997 * 109.47401 * 59.99831 * 11 10 9 37 37 H 1.08992 * 109.46730 * 299.99570 * 12 11 10 38 38 H 1.08997 * 109.47029 * 59.99665 * 12 11 10 39 39 H 1.09011 * 109.46783 * 60.00025 * 14 13 12 40 40 H 1.08996 * 109.47597 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47253 * 300.00202 * 14 13 12 42 42 H 1.08998 * 109.47315 * 289.99997 * 15 13 12 43 43 H 1.09007 * 109.47373 * 50.00201 * 15 13 12 44 44 H 0.96999 * 120.00485 * 359.97438 * 18 16 15 45 45 H 0.97000 * 119.99724 * 179.97438 * 22 21 19 46 46 H 0.96698 * 113.99587 * 270.17161 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5472 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3777 -0.0028 8 8 4.8270 -2.5924 -0.0041 9 7 6.0769 -0.7563 -0.0084 10 6 7.3119 -1.5443 -0.0159 11 6 8.5177 -0.6026 -0.0217 12 6 9.8075 -1.4257 -0.0290 13 7 10.9652 -0.5216 -0.0352 14 6 11.0443 0.2412 1.2177 15 6 12.2101 -1.2620 -0.2803 16 6 13.3342 -0.2882 -0.5237 17 8 13.1195 0.9052 -0.4953 18 7 14.5780 -0.7434 -0.7729 19 6 15.6007 0.1425 -0.9939 20 1 15.4097 1.2052 -0.9678 21 6 16.8832 -0.3268 -1.2503 22 7 17.1157 -1.6198 -1.2816 23 14 18.2766 0.8803 -1.5521 24 1 17.7564 2.2684 -1.4648 25 1 19.3337 0.6819 -0.5282 26 1 18.8469 0.6499 -2.9037 27 6 2.3139 -1.0920 -0.0067 28 8 1.9325 -2.3984 -0.0143 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5133 31 1 -0.3634 0.8897 0.5142 32 1 6.1199 0.2128 -0.0075 33 1 7.3464 -2.1739 0.8731 34 1 7.3370 -2.1719 -0.9068 35 1 8.4829 0.0267 -0.9111 36 1 8.4927 0.0252 0.8689 37 1 9.8420 -2.0546 0.8605 38 1 9.8327 -2.0538 -0.9194 39 1 11.1433 -0.4476 2.0568 40 1 11.9105 0.9022 1.1867 41 1 10.1382 0.8346 1.3397 42 1 12.4440 -1.8771 0.5886 43 1 12.0868 -1.9006 -1.1550 44 1 14.7498 -1.6978 -0.7953 45 1 18.0109 -1.9474 -1.4610 46 1 1.8201 -2.7803 0.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689797178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:08 Heat of formation + Delta-G solvation = -69.655559 kcal Electronic energy + Delta-G solvation = -27832.879965 eV Core-core repulsion = 23565.242439 eV Total energy + Delta-G solvation = -4267.637526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75682 -40.55755 -40.31176 -38.32976 -38.14522 -36.26087 -35.76928 -33.82118 -33.26868 -32.61152 -31.84714 -29.36430 -27.94733 -27.61363 -26.68016 -25.19365 -23.50177 -22.37320 -22.08105 -20.97177 -20.95667 -19.83670 -19.31617 -18.22878 -17.98931 -17.83115 -17.13422 -16.97040 -16.78939 -16.55831 -16.36767 -16.10554 -15.60485 -15.36386 -15.20319 -15.05181 -14.85415 -14.72791 -14.60255 -13.77285 -13.73829 -13.47348 -13.34214 -13.32054 -13.01875 -12.83449 -12.73651 -12.70028 -12.50063 -12.37298 -12.31967 -12.10369 -11.65187 -11.58165 -11.44789 -11.14048 -10.52643 -10.26062 -10.09406 -9.98064 -9.76022 -9.17693 -8.45071 -5.93530 0.36410 0.83731 1.37416 1.42408 1.56653 1.73209 2.07579 2.07729 2.22201 2.30233 2.81392 3.11384 3.22005 3.44891 3.64161 3.71057 3.93824 3.97441 4.06586 4.14802 4.32113 4.40805 4.43844 4.50896 4.56855 4.62403 4.64335 4.74461 4.76219 4.80530 4.83730 4.96503 5.09736 5.19406 5.20028 5.27700 5.38340 5.43053 5.90632 5.97149 6.09526 6.24789 6.39025 6.62871 6.71654 6.79376 7.10317 7.15094 7.58879 8.14868 8.72642 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.001429 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.544039 B =19595.999264 C =20085.710795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.010 3.990 3 N -0.353 5.353 4 H 0.469 0.531 5 N -0.248 5.248 6 C -0.061 4.061 7 C 0.597 3.403 8 O -0.563 6.563 9 N -0.707 5.707 10 C 0.127 3.873 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.025 3.975 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.015 3.985 28 O -0.467 6.467 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.774 1.616 5.907 35.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 N -0.074 5.074 4 H 0.319 0.681 5 N -0.087 5.087 6 C -0.221 4.221 7 C 0.382 3.618 8 O -0.440 6.440 9 N -0.359 5.359 10 C 0.003 3.997 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.263 5.263 14 C -0.123 4.123 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.041 4.041 28 O -0.275 6.275 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.251 0.749 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -34.131 2.705 4.901 34.587 hybrid contribution 0.770 -0.545 0.887 1.295 sum -33.361 2.160 5.788 33.928 Atomic orbital electron populations 1.20487 0.82935 1.05651 1.04664 1.22033 0.96931 0.86222 1.06468 1.43218 1.01924 1.10408 1.51829 0.68145 1.73543 1.03317 1.13183 1.18674 1.22299 0.95379 0.90845 1.13564 1.17054 0.82448 0.86191 0.76102 1.90798 1.87294 1.14223 1.51678 1.45796 1.04867 1.11397 1.73796 1.21291 0.81931 0.93932 1.02519 1.21624 0.91601 0.98122 1.03869 1.22076 0.88780 0.93893 1.02165 1.61491 1.01748 1.26718 1.36317 1.22462 1.03207 0.98024 0.88605 1.21745 0.88685 0.94085 1.02907 1.20800 0.84169 0.89909 0.82263 1.90457 1.83697 1.18540 1.57319 1.41946 1.06982 1.09469 1.62907 1.19702 0.88294 0.90995 1.47127 0.90312 1.26028 1.00376 0.98320 0.96561 1.69683 1.23630 1.13406 1.49547 0.84874 0.77392 0.77846 0.78234 1.19782 1.19627 1.19690 1.18114 0.89191 0.85931 1.10830 1.84867 1.88653 1.19492 1.34479 0.89254 0.88899 0.88065 0.74867 0.91157 0.91515 0.90659 0.90414 0.93370 0.89685 0.95321 0.92790 0.89920 0.91501 0.87267 0.77062 0.91368 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 10.44 71.23 0.74 0.58 16 2 C 0.01 0.11 7.27 41.37 0.30 0.41 16 3 N -0.35 -3.19 6.87 -47.27 -0.32 -3.52 16 4 H 0.47 0.25 8.96 -220.00 -1.97 -1.72 16 5 N -0.25 -4.08 11.91 -48.09 -0.57 -4.65 16 6 C -0.06 -1.30 7.13 42.45 0.30 -0.99 16 7 C 0.60 15.02 7.82 86.69 0.68 15.69 16 8 O -0.56 -17.82 16.53 -1.92 -0.03 -17.85 16 9 N -0.71 -14.38 5.55 -466.29 -2.59 -16.96 16 10 C 0.13 2.50 5.67 86.38 0.49 2.99 16 11 C -0.11 -2.24 5.25 30.59 0.16 -2.07 16 12 C 0.06 1.35 4.96 86.31 0.43 1.78 16 13 N -0.54 -17.22 4.50 -927.04 -4.17 -21.39 16 14 C 0.02 0.78 8.96 127.69 1.14 1.93 16 15 C 0.06 2.00 5.45 85.56 0.47 2.46 16 16 C 0.44 21.25 7.47 87.66 0.66 21.90 16 17 O -0.61 -34.10 13.91 -3.06 -0.04 -34.14 16 18 N -0.58 -29.90 5.29 -306.98 -1.62 -31.52 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.21 13.05 21.67 0.28 -49.93 16 23 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 C 0.02 0.28 7.28 22.57 0.16 0.44 16 28 O -0.47 -8.72 13.20 -92.49 -1.22 -9.94 16 29 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.41 7.08 8.19 -92.71 -0.76 6.32 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.44 6.55 -2.39 -0.02 1.43 16 37 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 38 H 0.08 1.83 7.93 -2.39 -0.02 1.81 16 39 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.05 2.17 5.82 -2.39 -0.01 2.16 16 41 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 42 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 43 H 0.11 3.38 7.93 -2.38 -0.02 3.36 16 44 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.40 4.13 9.07 -74.06 -0.67 3.46 16 Total: -1.00 -81.93 392.09 -4.51 -86.44 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -3.06 Total: 31.43 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 6.81 Total: 26.66 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -9.00 Total: -127.97 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -1.29 Total: -61.94 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -81.93 -4.51 -86.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689797178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.786 kcal (2) G-P(sol) polarization free energy of solvation -81.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds